ViewGene
Locus Name:
GeneID:
Location:

GeneID:1489
TrivialName: PA14_10350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10350
PAO1 Ortholog Locus:PA4142
Sequence Length:1257
Protein Length:418
Start: 894983
Stop: 893727
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07529.1|AE004831_1 (AE004831) probable secretion protein [Pseudomonas aeruginosa PAO1]
Identities = 417/418 (99%), Positives = 417/418 (99%)
Sequence:
ATGTTTCGCCAGGAAGCCCTCGACGCCCAGCATGCCGGCGCCCTGGGCGAGATCGTGCTGATCCGCCCGGTC
TCCTTCACTTTTCTCACCCTGCTGGCCGCGGCGATGGCGCTGCTGGTGGTGGGCTTCTTCCTGTTCGGCAGC
TACACCAAGCGCAGCACCGTCAGCGGCCAATTGGTTCCCGCCAGCGGCCAGGTCAAGGTGCACGCGCCGCAG
GCCGGCATCGTGCTGCGCAAGTTCGTCCAGGAAGGCCAGGCGGTACGACGTGGCGAGCGCCTGATGGTGCTT
TCCAGCGAACGCTACGGCAGCGATGCCGGCCCGGTGCAGGCCGGTATCAGCAGGCGCCTGGAACAACGCCGC
GACTCCCTGCGCGACGAACTGGAAAAGCTTCGCCGCCTGCAAGACGACGAGCGCGACAGCCTGACCAGCAAG
GTCGCCAGCCTGCAGCGCGAACTGACCACCCTCGCCGCCCAGACCGACAGCCAGCAACGCCTGCTGGCGCTG
GCCAGCGACGCCGCCGCGCGCTACCAGGGGCTGATGGACAAGGGCTACATCTCCATGGACCAGTTGCAGCAG
CGCCAGGCCGAGCTGCTCGGCCAGCGCCAGACCCTGCAAGGCCTGGAGCGCGAACGCACGTCGCTGCGGCAG
CAGTTGACCGAGCGCCGCAACGAACTCGCCGGGCTTTCCGCGCGCCAGGCCAACCAGCTCGCTGAAACCCGC
CGCCAGCTCAGCGCGGTGGAGCAGGACCTGGCCGAAAGCGAAGCCAAGCGCACCTTGCTGGTCACCGCGCCG
GAGAGCGGCATCGCCACCGCCGTGCTCGCCGAAGCCGGGCAGACCGTCGACAGCTCGCGTCCGCTGCTGAGC
ATCGTTCCCGCCGACACCCCGTTGCAGGCCGAACTCTACGCGCCGAGCAAGTCCATCGGTTTCATCCGGCCG
GGCGACGCGGTGCTGATCCGCTACCAGGCCTATCCGTACCAGAAGTTCGGCCAGTACCACGGCAAGGTGCAG
TCGATCTCCCGCGCCAGCGTCTCCTATGCCGAGCTTTCCAGCATGGTCGGCGGCGTACCGGGGCTCGGCCAG
GATGGCGAGCAGCTGTACCGGCTGCGGGTAACCCTCGACGACCAGGCGGTGACCGCCTACGGCCAGCCGCGT
CCGCTGCAGAGCGGCATGCTGCTGGACGCCGACATCCTCCAGGACACCCGGCGCCTCTACGAATGGGTGCTT
GAACCGCTCTACAGCCTGACCGGCAAACTCTAG
Translation:
MFRQEALDAQHAGALGEIVLIRPVSFTFLTLLAAAMALLVVGFFLFGSYTKRSTVSGQLVPASGQVKVHAPQ
AGIVLRKFVQEGQAVRRGERLMVLSSERYGSDAGPVQAGISRRLEQRRDSLRDELEKLRRLQDDERDSLTSK
VASLQRELTTLAAQTDSQQRLLALASDAAARYQGLMDKGYISMDQLQQRQAELLGQRQTLQGLERERTSLRQ
QLTERRNELAGLSARQANQLAETRRQLSAVEQDLAESEAKRTLLVTAPESGIATAVLAEAGQTVDSSRPLLS
IVPADTPLQAELYAPSKSIGFIRPGDAVLIRYQAYPYQKFGQYHGKVQSISRASVSYAELSSMVGGVPGLGQ
DGEQLYRLRVTLDDQAVTAYGQPRPLQSGMLLDADILQDTRRLYEWVLEPLYSLTGKL*
AnnotationID:1498GeneID:1489
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 15:03:25
Gene Name:
Confidence Code:3
GeneProduct:putative secretion protein
Cell Localization:()
Synonyms:PA4142
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1566
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO28371.1| (AE012554) colicin V secretion protein [Xylella fastidiosa
           Temecula1]
          Length = 420

 Score =  286 bits (732), Expect = 2e-76
 Identities = 152/418 (36%), Positives = 252/418 (60%), Gaps = 4/418 (0%)








 
Structural Features:
COG1566, EmrA, Multidrug resistance efflux pump 
[Defense mechanisms]
CD-Length = 352 residues,  80.4% aligned
Score = 77.3 bits (190), Expect = 4e-15
Identities = 81/330 (24%), Positives = 129/330 (39%), Gaps = 51/330 (15%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2981




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20126




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38085




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1489_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1489
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2667
                           PA4142_tr
                           translation of PA4142
                           418
                           99.76
                           99.76
                           0
                           2044.0
     

     
     
84199
                           gb|AAG07529.1|AE004831_1
                           (AE004831) probable secretion protein [Pseudomonas aeruginosa PAO1]
                           418
                           99.76
                           99.76
                           0
                           2044.0
     

     
     
84200
                           gb|AAQ57748.1|
                           (AE016910) probable secretion protein [Chromobacterium violaceum ATCC 12472]
                           423
                           42.31
                           62.17
                           12
                           833.0
     

     






      

          
GC ORFID: 44491How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4142Glimmer Score: 

          
Start: 4058954Stop: 4060210

          
Length: 1257


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4142 translation of PA4142Homolog Bit Score 791.0

          
Other Homologs:  t_PA4142 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTTCGCCAGGAAGCCCTCGACGCCCAGCATGCCGGCGCCCTGGGCGAGATCGTGCTGATCCGCCCGGTC 
TCCTTCACTTTTCTCACCCTGCTGGCCGCGGCGATGGCGCTGCTGGTGGTGGGCTTCTTCCTGTTCGGCAGC 
TACACCAAGCGCAGCACCGTCAGCGGCCAATTGGTTCCCGCCAGCGGCCAGGTCAAGGTGCACGCGCCGCAG 
GCCGGCATCGTGCTGCGCAAGTTCGTCCAGGAAGGCCAGGCGGTACGACGTGGCGAGCGCCTGATGGTGCTT 
TCCAGCGAACGCTACGGCAGCGATGCCGGCCCGGTGCAGGCCGGTATCAGCAGGCGCCTGGAACAACGCCGC 
GACTCCCTGCGCGACGAACTGGAAAAGCTTCGCCGCCTGCAAGACGACGAGCGCGACAGCCTGACCAGCAAG 
GTCGCCAGCCTGCAGCGCGAACTGACCACCCTCGCCGCCCAGACCGACAGCCAGCAACGCCTGCTGGCGCTG 
GCCAGCGACGCCGCCGCGCGCTACCAGGGGCTGATGGACAAGGGCTACATCTCCATGGACCAGTTGCAGCAG 
CGCCAGGCCGAGCTGCTCGGCCAGCGCCAGACCCTGCAAGGCCTGGAGCGCGAACGCACGTCGCTGCGGCAG 
CAGTTGACCGAGCGCCGCAACGAACTCGCCGGGCTTTCCGCGCGCCAGGCCAACCAGCTCGCTGAAACCCGC 
CGCCAGCTCAGCGCGGTGGAGCAGGACCTGGCCGAAAGCGAAGCCAAGCGCACCTTGCTGGTCACCGCGCCG 
GAGAGCGGCATCGCCACCGCCGTGCTCGCCGAAGCCGGGCAGACCGTCGACAGCTCGCGTCCGCTGCTGAGC 
ATCGTTCCCGCCGACACCCCGTTGCAGGCCGAACTCTACGCGCCGAGCAAGTCCATCGGTTTCATCCGGCCG 
GGCGACGCGGTGCTGATCCGCTACCAGGCCTATCCGTACCAGAAGTTCGGCCAGTACCACGGCAAGGTGCAG 
TCGATCTCCCGCGCCAGCGTCTCCTATGCCGAGCTTTCCAGCATGGTCGGCGGCGTACCGGGGCTCGGCCAG 
GATGGCGAGCAGCTGTACCGGCTGCGGGTAACCCTCGACGACCAGGCGGTGACCGCCTACGGCCAGCCGCGT 
CCGCTGCAGAGCGGCATGCTGCTGGACGCCGACATCCTCCAGGACACCCGGCGCCTCTACGAATGGGTGCTT 
GAACCGCTCTACAGCCTGACCGGCAAACTCTAG