ViewGene

Locus Name:
GeneID:
Location:

GeneID:1488
TrivialName: PA14_25900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25900
PAO1 Ortholog Locus:PA2950
Sequence Length:1197
Protein Length:398
Start: 2258754
Stop: 2259950
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06338.1|AE004721_6 (AE004721) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 398/398 (100%), Positives = 398/398 (100%)
Sequence:
ATGATCATCAAACCGCGCGTGCGTGGCTTCATCTGCGTCACTACCCATCCGGCAGGCTGCGAGGCCAACGTC
AAGCAACAGATCGACTACGTCGAGGCCAAGGGCCCCGTCGTCAACGGACCGAAGAAGGTCCTGGTCATCGGT
TCCTCCACCGGCTATGGCCTGGCTGCCCGCATCACCGCCGCGTTCGGTTCCGGCGCCGATACCCTCGGGGTG
TTCTTCGAGCGTCCGGGCAGCGAGAGCAAGCCGGGCACCGCCGGCTGGTACAACTCGGCGGCCTTCGAGAAG
TTCGCCCACGAGAAAGGCCTGTATGCCCGCAGCATCAATGGCGACGCTTTCTCCGACGAGGTGAAGCGGCTG
ACCATCGAGACCATCAAGCGCGATCTCGGCAAGGTCGACCTGGTGGTCTACAGCCTGGCCGCGCCGCGCCGT
ACCCATCCGAAGAGCGGCGAAGTGTTCTCCTCGACCCTCAAGCCGATCGGCAAGTCGGTCAGCTTCCGTGGC
CTGGACACCGACAAGGAAGTGATCAAGGACGTCGTCCTGGAGGCGGCCAGCGATCAGGAGGTCGCCGATACC
GTTGCGGTGATGGGCGGCGAGGACTGGCAGATGTGGATCGATGCGCTGCTGGAGGCCGACGTGCTGGCCGAC
GGCGCGAAGACCACCGCGTTCACCTACCTGGGCGAGAAGATCACCCACGACATCTACTGGAACGGTTCCATC
GGCGCGGCCAAGAAGGATCTCGACCAGAAGGTCCTCGGTATCCGCGACAAGCTCGCCCCTCTGGGCGGCGAT
GCGCGCGTGTCGGTGCTCAAGGCGGTGGTGACCCAGGCCAGCTCGGCGATCCCGATGATGCCGCTGTACCTG
TCGCTGCTGTTCAAGGTGATGAAGGAGCAGGGCACCCACGAAGGTTGCATCGAGCAGGTCGACGGCCTGTAC
CGGGAGAGCCTGTACGGCGCCGAGCCGCGCCTCGACGAGGAAGGCCGCCTGCGTGCCGACTACAAGGAACTG
CAGCCGGAAGTGCAGTCCCGTGTCGAGGAGCTGTGGGACAAGGTAACCAACGAGAACCTTTACGAGTTGACC
GACTTCGCTGGCTACAAGAGCGAGTTCCTCAACCTGTTCGGTTTCGAGGTCGCTGGGGTCGACTACGAGCAG
GACGTCAACCCGGACGTGCAGATCGCCAACCTGATCCAGGCCTGA
Translation:
MIIKPRVRGFICVTTHPAGCEANVKQQIDYVEAKGPVVNGPKKVLVIGSSTGYGLAARITAAFGSGADTLGV
FFERPGSESKPGTAGWYNSAAFEKFAHEKGLYARSINGDAFSDEVKRLTIETIKRDLGKVDLVVYSLAAPRR
THPKSGEVFSSTLKPIGKSVSFRGLDTDKEVIKDVVLEAASDQEVADTVAVMGGEDWQMWIDALLEADVLAD
GAKTTAFTYLGEKITHDIYWNGSIGAAKKDLDQKVLGIRDKLAPLGGDARVSVLKAVVTQASSAIPMMPLYL
SLLFKVMKEQGTHEGCIEQVDGLYRESLYGAEPRLDEEGRLRADYKELQPEVQSRVEELWDKVTNENLYELT
DFAGYKSEFLNLFGFEVAGVDYEQDVNPDVQIANLIQA*
AnnotationID:1497GeneID:1488
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 17:05:54
Gene Name:
Confidence Code:3
GeneProduct:putative short-chain alcohol dehydrogenase
Cell Localization:()
Synonyms:PA2950
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3007,pfam07055
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG3007, Uncharacterized paraquat-inducible protein B
CD-Length = 398 residues, 100.0% aligned
Score =  688 bits (1777), Expect = 0.0
Identities = 305/398 (76%), Positives = 353/398 (88%), Gaps = 1/398 (0%)

pfam07055, scADH, Short-chain alcohol dehydrogenase. 
CD-Length = 389 residues, 100.0% aligned
Score =  638 bits (1646), Expect = 0.0
Identities = 269/389 (69%), Positives = 319/389 (82%), Gaps = 3/389 (0%)
Genomic Context:
Comment:
ReferenceID:2979
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20124
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36100
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1488_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1488

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2666 PA2950_tr translation of PA2950 398 99.99 99.99 0 2042.0
84178 gb|AAG06338.1|AE004721_6 (AE004721) hypothetical protein PA2950 [Pseudomonas aeruginosa PAO1] 398 99.99 99.99 0 2042.0
84179 gb|AAM87661.1|AE014013_6 (AE014013) hypothetical [Yersinia pestis KIM] 399 79.19 89.97 1 1680.0
84180 emb|CAC93553.1| (AJ414160) conserved hypothetical protein [Yersinia pestis CO92] 399 79.19 89.97 1 1680.0
84185 gb|AAN70208.1|AE016660_5 (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440] 404 59.15 77.22 7 1236.0
GC ORFID: 44490How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2950Glimmer Score:
Start: 2695171Stop: 2693975
Length: 1197
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2950 translation of PA2950Homolog Bit Score 791.0
Other Homologs: t_PA2950 (ORF: GLIMMER)
GC ORF Sequence
ATGATCATCAAACCGCGCGTGCGTGGCTTCATCTGCGTCACTACCCATCCGGCAGGCTGCGAGGCCAACGTC
AAGCAACAGATCGACTACGTCGAGGCCAAGGGCCCCGTCGTCAACGGACCGAAGAAGGTCCTGGTCATCGGT
TCCTCCACCGGCTATGGCCTGGCTGCCCGCATCACCGCCGCGTTCGGTTCCGGCGCCGATACCCTCGGGGTG
TTCTTCGAGCGTCCGGGCAGCGAGAGCAAGCCGGGCACCGCCGGCTGGTACAACTCGGCGGCCTTCGAGAAG
TTCGCCCACGAGAAAGGCCTGTATGCCCGCAGCATCAATGGCGACGCTTTCTCCGACGAGGTGAAGCGGCTG
ACCATCGAGACCATCAAGCGCGATCTCGGCAAGGTCGACCTGGTGGTCTACAGCCTGGCCGCGCCGCGCCGT
ACCCATCCGAAGAGCGGCGAAGTGTTCTCCTCGACCCTCAAGCCGATCGGCAAGTCGGTCAGCTTCCGTGGC
CTGGACACCGACAAGGAAGTGATCAAGGACGTCGTCCTGGAGGCGGCCAGCGATCAGGAGGTCGCCGATACC
GTTGCGGTGATGGGCGGCGAGGACTGGCAGATGTGGATCGATGCGCTGCTGGAGGCCGACGTGCTGGCCGAC
GGCGCGAAGACCACCGCGTTCACCTACCTGGGCGAGAAGATCACCCACGACATCTACTGGAACGGTTCCATC
GGCGCGGCCAAGAAGGATCTCGACCAGAAGGTCCTCGGTATCCGCGACAAGCTCGCCCCTCTGGGCGGCGAT
GCGCGCGTGTCGGTGCTCAAGGCGGTGGTGACCCAGGCCAGCTCGGCGATCCCGATGATGCCGCTGTACCTG
TCGCTGCTGTTCAAGGTGATGAAGGAGCAGGGCACCCACGAAGGTTGCATCGAGCAGGTCGACGGCCTGTAC
CGGGAGAGCCTGTACGGCGCCGAGCCGCGCCTCGACGAGGAAGGCCGCCTGCGTGCCGACTACAAGGAACTG
CAGCCGGAAGTGCAGTCCCGTGTCGAGGAGCTGTGGGACAAGGTAACCAACGAGAACCTTTACGAGTTGACC
GACTTCGCTGGCTACAAGAGCGAGTTCCTCAACCTGTTCGGTTTCGAGGTCGCTGGGGTCGACTACGAGCAG
GACGTCAACCCGGACGTGCAGATCGCCAACCTGATCCAGGCCTGA