ViewGene

Locus Name:
GeneID:
Location:

GeneID:1487
TrivialName: PA14_34510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34510
PAO1 Ortholog Locus:PA2328
Sequence Length:1200
Protein Length:399
Start: 3067265
Stop: 3068464
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05716.1|AE004659_2 (AE004659) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 398/399 (99%), Positives = 398/399 (99%)
Sequence:
ATGTGCCTGGACGACCCGACCCATTCCCGACGTGACATCCTCAAGCTCGCCGCGCTGCTCAGCGCCGCCGGC
GCGTTGCCGCTGCTGAGCAGCCTGCAGGCGCGTGCCGCCGCCGAACCCGACGCGCCGGTGCGCATCGGCTAC
CTGCCGATCACCGACGCCACGCCCTTGCTGGTGGCCCATGCCAACGGCCTGTTCGAGGCCGAGGGCATCCAG
GCCGAACGGCCGGTGCTGTTGCGTAGCTGGGCGCAGGTGATCGAGGCGTTCATCTCCGGCCAGGTCAACGTC
ATCCACCTGCTGTCGCCGATGACCGTCTGGGCCCGCTACGGCAGCAAGGTGCCGGCCAAGGTGGTGGCCTGG
AACCACGTCGGCGGCTCGGGGCTCACGGTGGCTCCGGAGATCGACGACGTGCGCCAGCTCGGCGGCAAGAGC
GTGGCGATCCCGTTCTGGTACTCGATCCACAACGTGGTGTTGCAGCAACTGCTGCGCGACAACGGCCTGCGC
GCGGTGAGCCGTGCGGTGGGCGCGGCGCTGGCCGCCGACGAGGTCAACCTGGTGGTGCTGCCGCCTTCGGAC
ATGCCGCCGGCGCTGGCCAGCAAGCGCATCCACGGCTACATCGTCGCCGAGCCGTTCAATGCCCTGGCGGAG
AACCTCAAGGTCGGCCGGGTACAGCGCTTCACCGGCGATGTCTGGCGCAACCACGCCTGCTGCGTGGTGTTC
ATGCACGAACACGACCTGGAGCGGCGGCCGCAGTGGTCGCAAAAGGTGGTCAACGCCATCGTCAAGGCCCAG
CTATGGACTCGCGAGCACCGCGCCGAGGCCGCACAGTTGCTGTCCAAGGCCGGAGCCAACCGCTACACGCCG
CACGCGCCGGAGGTCCTCGGCCGGGTGCTGGCGCCGGGCGCCGAGGAGCAGCAGGCCTATCTCGCCAGCGGC
GCGATCCGCCACGCCGACTGGCAGGAGCGGCGCATCGACTTCCAGCCCTATCCCTATCCGAGCTACACCGAG
GAACTGGTGCGGCGGCTGAAGGACACCCTGATCGAAGGCAATAATGCCTTCCTCGCCAGCCTCGATCCGCGC
CAGGTGGCCAGTGACCTGGTGGACGACCGCTTCGTCCGCCAGGCCCTGGCAGAGGTCGGCGGGTTGCAGGCG
TTCGGCCTCGCCGAGGGCTTCCAGCGCAGCGAGGAGATCAGCCCGTGA
Translation:
MCLDDPTHSRRDILKLAALLSAAGALPLLSSLQARAAAEPDAPVRIGYLPITDATPLLVAHANGLFEAEGIQ
AERPVLLRSWAQVIEAFISGQVNVIHLLSPMTVWARYGSKVPAKVVAWNHVGGSGLTVAPEIDDVRQLGGKS
VAIPFWYSIHNVVLQQLLRDNGLRAVSRAVGAALAADEVNLVVLPPSDMPPALASKRIHGYIVAEPFNALAE
NLKVGRVQRFTGDVWRNHACCVVFMHEHDLERRPQWSQKVVNAIVKAQLWTREHRAEAAQLLSKAGANRYTP
HAPEVLGRVLAPGAEEQQAYLASGAIRHADWQERRIDFQPYPYPSYTEELVRRLKDTLIEGNNAFLASLDPR
QVASDLVDDRFVRQALAEVGGLQAFGLAEGFQRSEEISP*
AnnotationID:1496GeneID:1487
AnnotatorUID: danlee
Modification Date/Time: 2006-03-31 18:06:59
Gene Name:
Confidence Code:3
GeneProduct:putative sulfonate ABC transporter, periplasmic sulfonate-binding protein
Cell Localization:()
Synonyms:PA2328, srpL
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:membrane lipoprotein SrpL
Functional Category Confidence Code:5
COGs:COG0715
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69236.1|AE016558_6 (AE016787) sulfonate ABC transporter, periplasmic sulfonate-binding
           protein, putative [Pseudomonas putida KT2440]
          Length = 401

 Score =  657 bits (1695), Expect = 0.0
 Identities = 325/400 (81%), Positives = 354/400 (88%), Gaps = 2/400 (0%)

>gb|AAD53163.1|AF176824_6 (AF176824) membrane lipoprotein SrpL [Synechococcus sp. PCC 7942]
          Length = 407

 Score =  448 bits (1152), Expect = e-125
 Identities = 221/392 (56%), Positives = 277/392 (70%), Gaps = 7/392 (1%)

Structural Features:
COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate 
transport systems, periplasmic components 
[Inorganic ion transport and metabolism]
CD-Length = 335 residues,  93.4% aligned
Score =  178 bits (451), Expect = 1e-45
Identities = 97/325 (29%), Positives = 144/325 (44%), Gaps = 18/325 (5%)
Genomic Context:
Comment:
ReferenceID:2977
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20122
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32468
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1487_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1487

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2665 PA2328_tr translation of PA2328 399 99.74 99.74 0 2043.0
84174 gb|AAG05716.1|AE004659_2 (AE004659) hypothetical protein PA2328 [Pseudomonas aeruginosa PAO1] 399 99.74 99.74 0 2043.0
84175 gb|AAN69236.1|AE016558_6 (AE016787) sulfonate ABC transporter, periplasmic sulfonate-binding protein, putative [Pseudomonas putida KT2440] 401 81.04 88.27 2 1695.0
84176 gb|AAD53163.1|AF176824_6 (AF176824) membrane lipoprotein SrpL [Synechococcus sp. PCC 7942] 412 53.88 67.47 18 1147.0
84177 gb|AAM81179.1|AF441790_50 (AF441790) SrpL [Synechococcus sp. PCC 7942] 412 53.64 67.23 18 1143.0
GC ORFID: 44489How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2328Glimmer Score:
Start: 1886651Stop: 1885452
Length: 1200
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2328 translation of PA2328Homolog Bit Score 791.0
Other Homologs: t_PA2328 (ORF: GLIMMER)
GC ORF Sequence
ATGTGCCTGGACGACCCGACCCATTCCCGACGTGACATCCTCAAGCTCGCCGCGCTGCTCAGCGCCGCCGGC
GCGTTGCCGCTGCTGAGCAGCCTGCAGGCGCGTGCCGCCGCCGAACCCGACGCGCCGGTGCGCATCGGCTAC
CTGCCGATCACCGACGCCACGCCCTTGCTGGTGGCCCATGCCAACGGCCTGTTCGAGGCCGAGGGCATCCAG
GCCGAACGGCCGGTGCTGTTGCGTAGCTGGGCGCAGGTGATCGAGGCGTTCATCTCCGGCCAGGTCAACGTC
ATCCACCTGCTGTCGCCGATGACCGTCTGGGCCCGCTACGGCAGCAAGGTGCCGGCCAAGGTGGTGGCCTGG
AACCACGTCGGCGGCTCGGGGCTCACGGTGGCTCCGGAGATCGACGACGTGCGCCAGCTCGGCGGCAAGAGC
GTGGCGATCCCGTTCTGGTACTCGATCCACAACGTGGTGTTGCAGCAACTGCTGCGCGACAACGGCCTGCGC
GCGGTGAGCCGTGCGGTGGGCGCGGCGCTGGCCGCCGACGAGGTCAACCTGGTGGTGCTGCCGCCTTCGGAC
ATGCCGCCGGCGCTGGCCAGCAAGCGCATCCACGGCTACATCGTCGCCGAGCCGTTCAATGCCCTGGCGGAG
AACCTCAAGGTCGGCCGGGTACAGCGCTTCACCGGCGATGTCTGGCGCAACCACGCCTGCTGCGTGGTGTTC
ATGCACGAACACGACCTGGAGCGGCGGCCGCAGTGGTCGCAAAAGGTGGTCAACGCCATCGTCAAGGCCCAG
CTATGGACTCGCGAGCACCGCGCCGAGGCCGCACAGTTGCTGTCCAAGGCCGGAGCCAACCGCTACACGCCG
CACGCGCCGGAGGTCCTCGGCCGGGTGCTGGCGCCGGGCGCCGAGGAGCAGCAGGCCTATCTCGCCAGCGGC
GCGATCCGCCACGCCGACTGGCAGGAGCGGCGCATCGACTTCCAGCCCTATCCCTATCCGAGCTACACCGAG
GAACTGGTGCGGCGGCTGAAGGACACCCTGATCGAAGGCAATAATGCCTTCCTCGCCAGCCTCGATCCGCGC
CAGGTGGCCAGTGACCTGGTGGACGACCGCTTCGTCCGCCAGGCCCTGGCAGAGGTCGGCGGGTTGCAGGCG
TTCGGCCTCGCCGAGGGCTTCCAGCGCAGCGAGGAGATCAGCCCGTGA