ViewGene

Locus Name:
GeneID:
Location:

GeneID:1486
TrivialName: PA14_38730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38730
PAO1 Ortholog Locus:PA1993
Sequence Length:1209
Protein Length:402
Start: 3453132
Stop: 3454340
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05381.1|AE004625_11 (AE004625) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 400/402 (99%), Positives = 401/402 (99%)
Sequence:
ATGTCCGTCGATATCCGCCCCACCCCGCCGGCGCAGGACAGCGCCCGGCAGAACGTCACCCTGCAGATCGTC
TCGGTGGTGATGTTCACCTTCATCGGCTACCTGACCATCGGCATCCCGCTGGCGGTGCTGCCCGGCTACGTG
CACGACGACCTCGGCTACGGCTCGGTGCTGGCCGGCCTGGTGATCAGCCTGCAGTACCTCGCCACCCTGCTC
GCCCGGCCCTACGCCGGGCGCGTCATCGACGGGCTCGGGCCGAAGCGCGCGGTGCTCTACGGCATGGCCGGC
AGCGCCGCGAGCGGGCTGTTCATGCTGCTCTCGGTGGCGATCCAGGGCTGGCCGGCGCTGAGCCTGGCCAGC
CTGCTGGTCGGCCGCCTGGTACTCGGCGCGGCGGAAAGCCTGGTCGGCTCGGCGGCGATCGGCTGGGGCATC
GGCCGGGTCGGCGCGCCGCACACCGCCAAGGTGATTTCCTGGAACGGCATCGCCAGCTACGGCGCCATCGCC
CTCGGGGCGCCGCTAGGGGTGCTGCTGGTGCAGTGGCTGGGGCTGTGGAGCATGGGCGCGTCCATCGTCCTG
CTCGGGGCGCTCGGCTTCGCCCTGGCCTGGCCGAAGTTGCCGGCGCCGCTGGTGCACGGCGAGCGACTGCCG
TTCCACCATGTGCTCGGCCGGGTCACCCCGCACGGTATGGGCCTGGCGCTGGGGGCGATCGGCTTCGGCACC
ATCGCCACCTTCATCACCCTTTACTACGCCAGCCGTGGCTGGGCCAACGCAGTGCTCTGCCTGAGTGCCTTC
GGCGGTTGCTTCATCGGCGCCCGGCTGTTGTTCGCCAATAGCATCAACCGGCTCGGCGGCTTCCGCGTGGCG
ATCATCTGCCTCGGCGTCGAAAGCCTCGGCCTGCTGTTGCTGTGGAGCGCGCCGAATCCCTGGGTCGGCCTG
GCCGGCGCGGCCCTCACCGGCTTCGGCTTCTCCCTGGTGTTCCCGGCGTTCGGCGTGGAAGCGGTGAACCTG
GTACCGGCTTCCAACCGTGGCGCGGCGCTGGGCGCCTACTCGCTGTTCGTCGACCTGTCGCTGGGCATCACC
GGGCCGCTGGTGGGCTTCGTCGCCAACCTGTTCGGCTTCCGCTCGATGTTCCTCTTCGCCTGCCTGGCCTCG
CTCAGCGGGCTGGCCCTGGCCATTGCGCTGCACCGACGCAGCCGCCGGCCGGGCTAG
Translation:
MSVDIRPTPPAQDSARQNVTLQIVSVVMFTFIGYLTIGIPLAVLPGYVHDDLGYGSVLAGLVISLQYLATLL
ARPYAGRVIDGLGPKRAVLYGMAGSAASGLFMLLSVAIQGWPALSLASLLVGRLVLGAAESLVGSAAIGWGI
GRVGAPHTAKVISWNGIASYGAIALGAPLGVLLVQWLGLWSMGASIVLLGALGFALAWPKLPAPLVHGERLP
FHHVLGRVTPHGMGLALGAIGFGTIATFITLYYASRGWANAVLCLSAFGGCFIGARLLFANSINRLGGFRVA
IICLGVESLGLLLLWSAPNPWVGLAGAALTGFGFSLVFPAFGVEAVNLVPASNRGAALGAYSLFVDLSLGIT
GPLVGFVANLFGFRSMFLFACLASLSGLALAIALHRRSRRPG*
AnnotationID:1495GeneID:1486
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 17:05:51
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:yhhS
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2814
Secondary Functional Category(ies):carbohydrate transport and metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO55338.1| (AE016862) transporter, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 399

 Score =  558 bits (1438), Expect = e-158
 Identities = 280/393 (71%), Positives = 325/393 (82%), Gaps = 6/393 (1%)

>gb|AAL22441.1| (AE008865) putative MFS family transport protein [Salmonella
           typhimurium LT2]
          Length = 419

 Score =  389 bits (999), Expect = e-107
 Identities = 205/403 (50%), Positives = 265/403 (65%), Gaps = 7/403 (1%)

>gb|AAN82702.1|AE016768_120 (AE016768) Hypothetical protein yhhS [Escherichia coli CFT073]
          Length = 419

 Score =  375 bits (963), Expect = e-103
 Identities = 201/402 (50%), Positives = 260/402 (64%), Gaps = 7/402 (1%)
Structural Features:
COG2814, AraJ, Arabinose efflux permease 
[Carbohydrate transport and metabolism]
CD-Length = 394 residues,  99.7% aligned
Score = 71.0 bits (174), Expect = 3e-13
Identities = 94/403 (23%), Positives = 142/403 (35%), Gaps = 19/403 (4%)

Genomic Context:
Comment:
ReferenceID:2975
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20120
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32733
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1486_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1486

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2664 PA1993_tr translation of PA1993 402 99.50 99.75 0 2042.0
84146 gb|AAG05381.1|AE004625_11 (AE004625) probable MFS transporter [Pseudomonas aeruginosa PAO1] 402 99.50 99.75 0 2042.0
84147 gb|AAO55338.1| (AE016862) transporter, putative [Pseudomonas syringae pv. tomato str. DC3000] 405 69.13 80.49 9 1432.0
84148 gb|AAN70067.1|AE016646_4 (AE016790) membrane protein, putative [Pseudomonas putida KT2440] 408 68.62 78.92 14 1400.0
84149 gb|AAN68543.1|AE016486_6 (AE016785) transporter, putative [Pseudomonas putida KT2440] 402 53.73 69.90 5 1104.0
GC ORFID: 44488How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1993Glimmer Score:
Start: 1500779Stop: 1499571
Length: 1209
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1993 translation of PA1993Homolog Bit Score 791.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7628 (ORF: BLASTX 558.0), psyr_15may02_Scaffold1_revised_gene90 (ORF: BLASTX 418.0), t_PA1993 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCGTCGATATCCGCCCCACCCCGCCGGCGCAGGACAGCGCCCGGCAGAACGTCACCCTGCAGATCGTC
TCGGTGGTGATGTTCACCTTCATCGGCTACCTGACCATCGGCATCCCGCTGGCGGTGCTGCCCGGCTACGTG
CACGACGACCTCGGCTACGGCTCGGTGCTGGCCGGCCTGGTGATCAGCCTGCAGTACCTCGCCACCCTGCTC
GCCCGGCCCTACGCCGGGCGCGTCATCGACGGGCTCGGGCCGAAGCGCGCGGTGCTCTACGGCATGGCCGGC
AGCGCCGCGAGCGGGCTGTTCATGCTGCTCTCGGTGGCGATCCAGGGCTGGCCGGCGCTGAGCCTGGCCAGC
CTGCTGGTCGGCCGCCTGGTACTCGGCGCGGCGGAAAGCCTGGTCGGCTCGGCGGCGATCGGCTGGGGCATC
GGCCGGGTCGGCGCGCCGCACACCGCCAAGGTGATTTCCTGGAACGGCATCGCCAGCTACGGCGCCATCGCC
CTCGGGGCGCCGCTAGGGGTGCTGCTGGTGCAGTGGCTGGGGCTGTGGAGCATGGGCGCGTCCATCGTCCTG
CTCGGGGCGCTCGGCTTCGCCCTGGCCTGGCCGAAGTTGCCGGCGCCGCTGGTGCACGGCGAGCGACTGCCG
TTCCACCATGTGCTCGGCCGGGTCACCCCGCACGGTATGGGCCTGGCGCTGGGGGCGATCGGCTTCGGCACC
ATCGCCACCTTCATCACCCTTTACTACGCCAGCCGTGGCTGGGCCAACGCAGTGCTCTGCCTGAGTGCCTTC
GGCGGTTGCTTCATCGGCGCCCGGCTGTTGTTCGCCAATAGCATCAACCGGCTCGGCGGCTTCCGCGTGGCG
ATCATCTGCCTCGGCGTCGAAAGCCTCGGCCTGCTGTTGCTGTGGAGCGCGCCGAATCCCTGGGTCGGCCTG
GCCGGCGCGGCCCTCACCGGCTTCGGCTTCTCCCTGGTGTTCCCGGCGTTCGGCGTGGAAGCGGTGAACCTG
GTACCGGCTTCCAACCGTGGCGCGGCGCTGGGCGCCTACTCGCTGTTCGTCGACCTGTCGCTGGGCATCACC
GGGCCGCTGGTGGGCTTCGTCGCCAACCTGTTCGGCTTCCGCTCGATGTTCCTCTTCGCCTGCCTGGCCTCG
CTCAGCGGGCTGGCCCTGGCCATTGCGCTGCACCGACGCAGCCGCCGGCCGGGCTAG