ViewGene
Locus Name:
GeneID:
Location:

GeneID:1485
TrivialName: PA14_48630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48630
PAO1 Ortholog Locus:PA1212
Sequence Length:1230
Protein Length:409
Start: 4324972
Stop: 4326201
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04601.1|AE004551_5 (AE004551) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 408/409 (99%), Positives = 408/409 (99%)
Sequence:
GTGAGCGACAACACCTTCAGCGTGCAACGCTTCCGCGCCCTGCCGACGGAAATTCACGTGATGCTCGTCGGT
ACGCTGCTGACCCGCGGCGCCTACTTCATGGTCTGGCCGTTCCTGGCACTGCTGCTGTGGCGCGAGTTCCGG
CTGTCCGCCAGCGCCATCGGCCTGCTGCTGGCGCTGGCGACCGTCTGCGGCGCGCTCAGCGGCATCTACACC
GGCTGGCTGTCGGATCGTTTCGGGCGCAAGCGCCTGATCTTCTTCGGCACCAGTCTCAGCGGACTTTCCTTC
GTGTTGCTGGGCTTCAGCGGCCAGCCGCTGTCCTACGGACTGGCGATCTCCGGGGTGAGCATCGGCTGCGCC
CTGCTCGAATCGAGCTGCAAGGCGCTGATCGGCGACCGCGTCGAGGATCGCCGCTCGCGGGAACTGGCGCTC
TACTGCCGGTACTTCCTGATCAACCTGGGCGCCGCCCTCGGCCCGCTGATCGGCCTGACCCTCGGCGTCGCC
GCCCAGGCCGGCACCTTCCTGGTCACCGCGCTGGTCTACTTCTGCTACGGCCTGCTGCTCTGGCGCCTGCTG
CACCACCTCGAACTGAAGCGGCGCAGCCTTGCCCCGCGATCCTCGACCGGGTTCCTCGAAGCCTGCCTGAGC
ATGGCCCGGCATCGCGCCTTCACCCTGCTGTTGCTGTGCAACATGCTGGCCGCGCTGATCTACGCCACCTTC
GATTCGACCCTCGTGCAGTACCTCACCCGCAGCGGTCTGCCCGACGTGGTCAACAGCATCGCCCTGCTGGTG
ACCATCAACGCGCTGACCATAGTGGTCGCCCAGTTTCCCCTCCTCCGCCTGCTGGAAAACACCGGCACCGGC
GGCCGCCTGATGCTCGGCATGCTGCTCATGCTCCTGGCCCAGCTAGGCTTCGCCTGGACCCCGGTGACCCTG
TTCGCCGGCCTGGCGCTGGCCACGGTGGTGCTCAGCCTCGGCGAACTGATCGTGTTCCCGACCTTCAGCGTG
GAGGTCGACCAACTGACCCCCGACGACTTGCGCGGCAGCTATTTCGGCGCGGCCAATCTCTACAGCCTCGGC
ACCGCGCTGGCACCGCTGTACGGCGGGATCATGCTCGACCATGCCGGCAGCCAGGCGCTGTACCTCGGCCTG
GCCGCGCTGTGCGGGGTGATCATGCTGCTGCAGGTCGGCGCAGTCGGCCTGCGCCAGGCCGAGCGGGCCGGC
GGATGA
Translation:
MSDNTFSVQRFRALPTEIHVMLVGTLLTRGAYFMVWPFLALLLWREFRLSASAIGLLLALATVCGALSGIYT
GWLSDRFGRKRLIFFGTSLSGLSFVLLGFSGQPLSYGLAISGVSIGCALLESSCKALIGDRVEDRRSRELAL
YCRYFLINLGAALGPLIGLTLGVAAQAGTFLVTALVYFCYGLLLWRLLHHLELKRRSLAPRSSTGFLEACLS
MARHRAFTLLLLCNMLAALIYATFDSTLVQYLTRSGLPDVVNSIALLVTINALTIVVAQFPLLRLLENTGTG
GRLMLGMLLMLLAQLGFAWTPVTLFAGLALATVVLSLGELIVFPTFSVEVDQLTPDDLRGSYFGAANLYSLG
TALAPLYGGIMLDHAGSQALYLGLAALCGVIMLLQVGAVGLRQAERAGG*
AnnotationID:1494GeneID:1485
AnnotatorUID: diggins
Modification Date/Time: 2005-02-21 20:08:59
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:PA1212
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO08348.1|AE016813_100 (AE016813) Permease of the major facilitator superfamily [Vibrio
           vulnificus CMCP6]
          Length = 379

 Score =  261 bits (668), Expect = 4e-69
 Identities = 142/363 (39%), Positives = 225/363 (61%), Gaps = 5/363 (1%)

>gb|AAF70303.1|AF259973_1 (AF259973) putative YqjV [Vibrio cholerae]
          Length = 305

 Score =  228 bits (580), Expect = 7e-59
 Identities = 132/291 (45%), Positives = 179/291 (61%), Gaps = 9/291 (3%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14367




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20118




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37568




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1485_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1485
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2663
                           PA1212_tr
                           translation of PA1212
                           409
                           99.75
                           99.75
                           0
                           2044.0
     

     
     
84142
                           gb|AAG04601.1|AE004551_5
                           (AE004551) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           409
                           99.51
                           99.75
                           0
                           2041.0
     

     
     
84143
                           emb|CAE12412.1|
                           (BX571859) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           409
                           46.94
                           68.45
                           6
                           957.0
     

     
     
84144
                           gb|AAF96868.1|
                           (AE004423) conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           441
                           38.32
                           56.91
                           39
                           786.0
     

     
     
84145
                           gb|AAF70303.1|AF259973_1
                           (AF259973) putative YqjV [Vibrio cholerae]
                           422
                           31.51
                           43.60
                           130
                           584.0
     

     






      

          
GC ORFID: 44487How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1212Glimmer Score: 

          
Start: 628936Stop: 627707

          
Length: 1230


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1212 translation of PA1212Homolog Bit Score 791.0

          
Other Homologs:  t_PA1212 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCGACAACACCTTCAGCGTGCAACGCTTCCGCGCCCTGCCGACGGAAATTCACGTGATGCTCGTCGGT 
ACGCTGCTGACCCGCGGCGCCTACTTCATGGTCTGGCCGTTCCTGGCACTGCTGCTGTGGCGCGAGTTCCGG 
CTGTCCGCCAGCGCCATCGGCCTGCTGCTGGCGCTGGCGACCGTCTGCGGCGCGCTCAGCGGCATCTACACC 
GGCTGGCTGTCGGATCGTTTCGGGCGCAAGCGCCTGATCTTCTTCGGCACCAGTCTCAGCGGACTTTCCTTC 
GTGTTGCTGGGCTTCAGCGGCCAGCCGCTGTCCTACGGACTGGCGATCTCCGGGGTGAGCATCGGCTGCGCC 
CTGCTCGAATCGAGCTGCAAGGCGCTGATCGGCGACCGCGTCGAGGATCGCCGCTCGCGGGAACTGGCGCTC 
TACTGCCGGTACTTCCTGATCAACCTGGGCGCCGCCCTCGGCCCGCTGATCGGCCTGACCCTCGGCGTCGCC 
GCCCAGGCCGGCACCTTCCTGGTCACCGCGCTGGTCTACTTCTGCTACGGCCTGCTGCTCTGGCGCCTGCTG 
CACCACCTCGAACTGAAGCGGCGCAGCCTTGCCCCGCGATCCTCGACCGGGTTCCTCGAAGCCTGCCTGAGC 
ATGGCCCGGCATCGCGCCTTCACCCTGCTGTTGCTGTGCAACATGCTGGCCGCGCTGATCTACGCCACCTTC 
GATTCGACCCTCGTGCAGTACCTCACCCGCAGCGGTCTGCCCGACGTGGTCAACAGCATCGCCCTGCTGGTG 
ACCATCAACGCGCTGACCATAGTGGTCGCCCAGTTTCCCCTCCTCCGCCTGCTGGAAAACACCGGCACCGGC 
GGCCGCCTGATGCTCGGCATGCTGCTCATGCTCCTGGCCCAGCTAGGCTTCGCCTGGACCCCGGTGACCCTG 
TTCGCCGGCCTGGCGCTGGCCACGGTGGTGCTCAGCCTCGGCGAACTGATCGTGTTCCCGACCTTCAGCGTG 
GAGGTCGACCAACTGACCCCCGACGACTTGCGCGGCAGCTATTTCGGCGCGGCCAATCTCTACAGCCTCGGC 
ACCGCGCTGGCACCGCTGTACGGCGGGATCATGCTCGACCATGCCGGCAGCCAGGCGCTGTACCTCGGCCTG 
GCCGCGCTGTGCGGGGTGATCATGCTGCTGCAGGTCGGCGCAGTCGGCCTGCGCCAGGCCGAGCGGGCCGGC 
GGATGA