ViewGene
Locus Name:
GeneID:
Location:

GeneID:1484
TrivialName: PA14_51260
AnnotatorUID: danlee
Modification Date/Time:2006-06-03 00:12:47
LocusName:PA14_51260
PAO1 Ortholog Locus:PA1011
Sequence Length:1191
Protein Length:396
Start: 4555784
Stop: 4554594
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04400.1|AE004533_11 (AE004533) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 396/396 (100%), Positives = 396/396 (100%)
Sequence:
ATGAAGCGACTGGCTGGACTGACCGCCCTCGCCCTGGTTATCGGCAACACTTCCGGCTGCGGCTGGCTGTGG
GGGCCGGAGGGCTATTTCCGCGACCGCGGCGACGACTACCTCGGCGCCCGCGAGACGCCTCCCATGCAATTG
CCCGAAGGGGTGCACAGCAAGCCGCTCGATCCGCTGCTGCCGATTCCGCTGAACGTCGCCACCACCCACGAA
AAAGAGGGTGAGTACGAGGTTCCGCGTCCGCAGCCGCTGGCCAACGCCGGCGACATCAGCGACTACAGCCTG
CAGCGCAGCGGCGATAGCCGCTGGGTCGTGGCCCAGCGTCCGCCGGCGGAAGTCTGGCCGGTGGCCCGGCAG
TTCTTCGAGGAGAACGGTTTCCGCATCGCCGACGAGCGCCCGCAGACCGGCGAGTTCAGTTCCGACTGGCAA
TCGCTGTCGCAGCTTTCCGCGCCGCTGGCACGCCGCCTTAGCAGCCGCGTGAGCGGTGTCGAGCCGGACGGC
CAGGCACGGGTTCGGGTGCGTATCGAGCCCGGCGTGCAAAGCAATACCAGCGAGGTCTACGTGCTCAGCCAG
ACCCGCGCCGCCGGTGACACCAGCAGCCCGAGCTGGCCGAGCAAGTCGGTGGCGCCGAGCCTCGACGCGGCG
CTGCTCGACGAGATGGTCGCGAGCATGGCGCGCAGCGCCGAGCAGGGCGGCTCGGTCTCCCTGCTGGCAGCC
AACTCGATCTACGACACGCCCGGCACCTTCGAGTTGAGCAAGGACGGCAGCGGCAACCCGGTGCTGACCTTG
CAATCCGACTTCGACCGCTCCTGGGTCAGTGTCGGGCGTGCCCTGGATAACGCCGATATCCGCGTCGACGAC
CTCAACCGCAGCCTTGGCGTGTACTACGTGAACATCGCCGAAGGGGCGAAGAAGCCCGACGAAGACAAGCCC
GGGTTCTTCAGTCGCCTGTTCGGCGGCGGCGAGAAGACCAAGGAAGAGGAAGACGCCAAGGCGCAGCGCTAC
CAGGTCCGCCTGACCACCGTCAGCGACGCCGTGCAGGTCACCGTCGACAAGGACATCAACACCTCTGCGCCG
GCCGATGTCGCGCAAAACGTACTGGAAAAACTCCAGGAGAGCATGCGCAATGCGGTTCGCGGTTCTGGGCAG
CGGAAGCCGGGGCAATTCGGCCTTGGTGAGCAGTTCTGA
Translation:
MKRLAGLTALALVIGNTSGCGWLWGPEGYFRDRGDDYLGARETPPMQLPEGVHSKPLDPLLPIPLNVATTHE
KEGEYEVPRPQPLANAGDISDYSLQRSGDSRWVVAQRPPAEVWPVARQFFEENGFRIADERPQTGEFSSDWQ
SLSQLSAPLARRLSSRVSGVEPDGQARVRVRIEPGVQSNTSEVYVLSQTRAAGDTSSPSWPSKSVAPSLDAA
LLDEMVASMARSAEQGGSVSLLAANSIYDTPGTFELSKDGSGNPVLTLQSDFDRSWVSVGRALDNADIRVDD
LNRSLGVYYVNIAEGAKKPDEDKPGFFSRLFGGGEKTKEEEDAKAQRYQVRLTTVSDAVQVTVDKDINTSAP
ADVAQNVLEKLQESMRNAVRGSGQRKPGQFGLGEQF*
AnnotationID:1493GeneID:1484
AnnotatorUID: danlee
Modification Date/Time: 2004-05-17 16:04:54
Gene Name:
Confidence Code:4
GeneProduct:Putative lipoprotein
Cell Localization:()
Synonyms:PA1011
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3317
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3317, NlpB, Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
     CD-Length = 342 residues, 100.0% aligned
     Score =  324 bits (833), Expect = 9e-90






   
Genomic Context:






   
Comment:


















    ReferenceID:2971




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20116




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1484
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2662
                           PA1011_tr
                           translation of PA1011
                           396
                           99.99
                           99.99
                           0
                           2043.0
     

     
     
84139
                           gb|AAG04400.1|AE004533_11
                           (AE004533) hypothetical protein PA1011 [Pseudomonas aeruginosa PAO1]
                           396
                           99.99
                           99.99
                           0
                           2043.0
     

     
     
84140
                           gb|AAO57413.1|
                           (AE016870) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           397
                           60.70
                           76.07
                           26
                           1243.0
     

     
     
84141
                           gb|AAN66862.1|AE016314_9
                           (AE016778) lipoprotein, putative [Pseudomonas putida KT2440]
                           401
                           60.09
                           72.81
                           33
                           1183.0
     

     






      

          
GC ORFID: 44486How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1011Glimmer Score: 

          
Start: 398123Stop: 399313

          
Length: 1191


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1011 translation of PA1011Homolog Bit Score 791.0

          
Other Homologs:  t_PA1011 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGCGACTGGCTGGACTGACCGCCCTCGCCCTGGTTATCGGCAACACTTCCGGCTGCGGCTGGCTGTGG 
GGGCCGGAGGGCTATTTCCGCGACCGCGGCGACGACTACCTCGGCGCCCGCGAGACGCCTCCCATGCAATTG 
CCCGAAGGGGTGCACAGCAAGCCGCTCGATCCGCTGCTGCCGATTCCGCTGAACGTCGCCACCACCCACGAA 
AAAGAGGGTGAGTACGAGGTTCCGCGTCCGCAGCCGCTGGCCAACGCCGGCGACATCAGCGACTACAGCCTG 
CAGCGCAGCGGCGATAGCCGCTGGGTCGTGGCCCAGCGTCCGCCGGCGGAAGTCTGGCCGGTGGCCCGGCAG 
TTCTTCGAGGAGAACGGTTTCCGCATCGCCGACGAGCGCCCGCAGACCGGCGAGTTCAGTTCCGACTGGCAA 
TCGCTGTCGCAGCTTTCCGCGCCGCTGGCACGCCGCCTTAGCAGCCGCGTGAGCGGTGTCGAGCCGGACGGC 
CAGGCACGGGTTCGGGTGCGTATCGAGCCCGGCGTGCAAAGCAATACCAGCGAGGTCTACGTGCTCAGCCAG 
ACCCGCGCCGCCGGTGACACCAGCAGCCCGAGCTGGCCGAGCAAGTCGGTGGCGCCGAGCCTCGACGCGGCG 
CTGCTCGACGAGATGGTCGCGAGCATGGCGCGCAGCGCCGAGCAGGGCGGCTCGGTCTCCCTGCTGGCAGCC 
AACTCGATCTACGACACGCCCGGCACCTTCGAGTTGAGCAAGGACGGCAGCGGCAACCCGGTGCTGACCTTG 
CAATCCGACTTCGACCGCTCCTGGGTCAGTGTCGGGCGTGCCCTGGATAACGCCGATATCCGCGTCGACGAC 
CTCAACCGCAGCCTTGGCGTGTACTACGTGAACATCGCCGAAGGGGCGAAGAAGCCCGACGAAGACAAGCCC 
GGGTTCTTCAGTCGCCTGTTCGGCGGCGGCGAGAAGACCAAGGAAGAGGAAGACGCCAAGGCGCAGCGCTAC 
CAGGTCCGCCTGACCACCGTCAGCGACGCCGTGCAGGTCACCGTCGACAAGGACATCAACACCTCTGCGCCG 
GCCGATGTCGCGCAAAACGTACTGGAAAAACTCCAGGAGAGCATGCGCAATGCGGTTCGCGGTTCTGGGCAG 
CGGAAGCCGGGGCAATTCGGCCTTGGTGAGCAGTTCTGA