ViewGene
Locus Name:
GeneID:
Location:

GeneID:1481
TrivialName: PA14_46750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46750
PAO1 Ortholog Locus:PA1356
Sequence Length:1107
Protein Length:368
Start: 4165730
Stop: 4164624
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04745.1|AE004565_4 (AE004565) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 368/368 (100%), Positives = 368/368 (100%)
Sequence:
GTGAGCGAGCGACTCTATGTCGGCACCCGCAAGGGCCTGTTCGAGCTGCGGCGCAACGCGGCGGGCCAGTGG
CTGCCGATGGCCAGCCACTTCCTCGGCGAGCCGTTGAGCATGCTCCTCGCCGACCCGCGCGACGGCGCGCTC
TACGCGGCGCTGAACCTCGGCCATTTCGGCGTCAAGCTGTGGCGTCGCGACGCCGGCGCGACGGACTGGATG
GAATGCGCGGTGCCGGTCTATCCGCCGCAGCCGCCAGCGGCCGAACCGCTGGAAGGCCAGGCGGCGGAGCCA
CCCTGGTCGCTACAGCAGTTGTGGATCCTCGAGCCAGGCGGCGCCGACCGGCCCGGCACGCTGTGGGCCGGG
ACCATCCCCGGCGGCCTGTTCCGCTCCGACGACCGTGGCGCCAGCTGGCGCCTCAACCGCGAACTCTGGGAA
CGACCCGAGCGCGCCCAGTGGTTCGGCGGCGGCTACGACCATCCCGGCATCCACTCCATCTGCGTCGACCCA
CGCGACAGTCGCCACCTCACTGTCGCGGTGTCCTGCGGCGGCGTCTGGCAGAGCCACGACGACGGCCGCAGC
TGGACCTGCACCACCAAAGGCATGCGCGCCGACTACATGCCGCCGGAGCAGAGCGAGGAGGCGGCGATCCAG
GACCCGCACCGCCTGGTGCAGTGCCAGGCGCGCCCGGAGTTCCTCTGGGTGCAGCACCACAACGGCATCTTC
CGTTCCCGCGACGGCGGCCTGCATTGGCAGGGCGTGGTCGCCGAGCCGTCCAGCTTCGGCTTCGCCGTCGCC
GTGCATCCGCGGCAGCCGGACACGGCCTGGTTCGTCCCGGCGACCAAGGACGAATGCCGCATTCCCAGGGAC
GCCCGTTTCGTGGTCACCCGCACCCGCGACGGCGGCCGCAGCTTCGAGACCCTCGAGCGCGGCCTGCCCGAT
GGCCCGGCCTACGACCTGGTCTACCGCCACGGCCTGGACATCGACCCCAGCGGCGAGCGCCTGGCCATGGGC
TCGACCACCGGCGGCCTGTGGCTTAGCGAGAACGGCGGGGAGGACTGGCAGCAGCTCTCCGCCAACCTGCCG
CCGATCTACTGCGTGCGCTTCGCCTGA
Translation:
MSERLYVGTRKGLFELRRNAAGQWLPMASHFLGEPLSMLLADPRDGALYAALNLGHFGVKLWRRDAGATDWM
ECAVPVYPPQPPAAEPLEGQAAEPPWSLQQLWILEPGGADRPGTLWAGTIPGGLFRSDDRGASWRLNRELWE
RPERAQWFGGGYDHPGIHSICVDPRDSRHLTVAVSCGGVWQSHDDGRSWTCTTKGMRADYMPPEQSEEAAIQ
DPHRLVQCQARPEFLWVQHHNGIFRSRDGGLHWQGVVAEPSSFGFAVAVHPRQPDTAWFVPATKDECRIPRD
ARFVVTRTRDGGRSFETLERGLPDGPAYDLVYRHGLDIDPSGERLAMGSTTGGLWLSENGGEDWQQLSANLP
PIYCVRFA*
AnnotationID:1490GeneID:1481
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 09:09:43
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1356
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:14363




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20110




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1481
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2659
                           PA1356_tr
                           translation of PA1356
                           368
                           99.99
                           99.99
                           0
                           2046.0
     

     
     
84094
                           gb|AAG04745.1|AE004565_4
                           (AE004565) hypothetical protein PA1356 [Pseudomonas aeruginosa PAO1]
                           368
                           99.72
                           99.99
                           0
                           2043.0
     

     
     
84095
                           emb|CAD18494.1|
                           (AL646084) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           392
                           63.01
                           73.46
                           28
                           1383.0
     

     
     
84096
                           emb|CAD18463.1|
                           (AL646084) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           392
                           63.01
                           73.46
                           28
                           1383.0
     

     






      

          
GC ORFID: 44483How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1356Glimmer Score: 

          
Start: 788179Stop: 789285

          
Length: 1107


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1356 translation of PA1356Homolog Bit Score 792.0

          
Other Homologs:  t_PA1356 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCGAGCGACTCTATGTCGGCACCCGCAAGGGCCTGTTCGAGCTGCGGCGCAACGCGGCGGGCCAGTGG 
CTGCCGATGGCCAGCCACTTCCTCGGCGAGCCGTTGAGCATGCTCCTCGCCGACCCGCGCGACGGCGCGCTC 
TACGCGGCGCTGAACCTCGGCCATTTCGGCGTCAAGCTGTGGCGTCGCGACGCCGGCGCGACGGACTGGATG 
GAATGCGCGGTGCCGGTCTATCCGCCGCAGCCGCCAGCGGCCGAACCGCTGGAAGGCCAGGCGGCGGAGCCA 
CCCTGGTCGCTACAGCAGTTGTGGATCCTCGAGCCAGGCGGCGCCGACCGGCCCGGCACGCTGTGGGCCGGG 
ACCATCCCCGGCGGCCTGTTCCGCTCCGACGACCGTGGCGCCAGCTGGCGCCTCAACCGCGAACTCTGGGAA 
CGACCCGAGCGCGCCCAGTGGTTCGGCGGCGGCTACGACCATCCCGGCATCCACTCCATCTGCGTCGACCCA 
CGCGACAGTCGCCACCTCACTGTCGCGGTGTCCTGCGGCGGCGTCTGGCAGAGCCACGACGACGGCCGCAGC 
TGGACCTGCACCACCAAAGGCATGCGCGCCGACTACATGCCGCCGGAGCAGAGCGAGGAGGCGGCGATCCAG 
GACCCGCACCGCCTGGTGCAGTGCCAGGCGCGCCCGGAGTTCCTCTGGGTGCAGCACCACAACGGCATCTTC 
CGTTCCCGCGACGGCGGCCTGCATTGGCAGGGCGTGGTCGCCGAGCCGTCCAGCTTCGGCTTCGCCGTCGCC 
GTGCATCCGCGGCAGCCGGACACGGCCTGGTTCGTCCCGGCGACCAAGGACGAATGCCGCATTCCCAGGGAC 
GCCCGTTTCGTGGTCACCCGCACCCGCGACGGCGGCCGCAGCTTCGAGACCCTCGAGCGCGGCCTGCCCGAT 
GGCCCGGCCTACGACCTGGTCTACCGCCACGGCCTGGACATCGACCCCAGCGGCGAGCGCCTGGCCATGGGC 
TCGACCACCGGCGGCCTGTGGCTTAGCGAGAACGGCGGGGAGGACTGGCAGCAGCTCTCCGCCAACCTGCCG 
CCGATCTACTGCGTGCGCTTCGCCTGA