ViewGene

Locus Name:
GeneID:
Location:

GeneID:1480
TrivialName: PA14_07090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07090
PAO1 Ortholog Locus:PA0546
Sequence Length:1191
Protein Length:396
Start: 614872
Stop: 613682
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03935.1|AE004491_2 (AE004491) methionine adenosyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 396/396 (100%), Positives = 396/396 (100%)
Sequence:
ATGAGCGAATATTCCGTTTTCACCTCCGAGTCCGTGTCCGAAGGCCATCCGGACAAGATCGCGGACCAGATC
TCCGACGCGGTGCTGGACGCCATCATCGCCAAGGACAAGTACGCTCGCGTGGCATGCGAAACCCTGGTCAAG
ACCGGCGTGGCGATCATCGCCGGTGAAGTCACCACCTCCGCCTGGGTCGACCTGGAAGAGCTGGTGCGCAAG
GTCATCATCGACATCGGCTACGACAGCTCCGACGTCGGCTTCGATGGCGCCACCTGCGGCGTGCTGAACATC
ATCGGCAAGCAGTCGGTGGACATCAACCAGGGCGTCGACCGGGCCAAGCCGGAAGACCAGGGCGCCGGCGAC
CAGGGCCTGATGTTCGGCTACGCCAGCAACGAGACCGACGTGCTGATGCCGGCGCCGATCTGCTTCTCCCAC
CGCCTGGTCGAGCGCCAGGCCGAGGCGCGCAAGTCCGGCCTGCTGCCATGGCTGCGCCCGGACGCCAAGTCC
CAGGTGACCTGCCGCTACGAAGGCGGCAAGGTGGTCGGCATCGATGCGGTGGTGCTGTCCACCCAGCACAAC
CCGGAAGTCTCCTATAACGACCTGCGCGACGGCGTGATGGAGCTGATCATCAAGCAGGTGCTGCCGGCCGAG
CTGCTGCACAAGGACACCCAGTTCCACATCAACCCGACCGGCAACTTCGTGATCGGCGGCCCGGTCGGCGAC
TGCGGCCTGACCGGACGCAAGATCATCGTCGACTCCTACGGCGGCATGGCCCGCCACGGCGGCGGCGCGTTC
TCCGGCAAGGACCCGTCCAAGGTCGACCGCTCCGCCGCCTACGCCGGCCGCTACGTGGCGAAGAACATCGTC
GCCGCCGGCCTCGCCGAGCGTTGCGAGATCCAGGTTTCCTACGCCATCGGCGTGGCCCAGCCGACCTCGATC
TCGATCAACACCTTCGGCACCGGCAAGGTCAGCGACGAGAAGATCGTGCAACTGGTCCGCGAGCACTTCGAC
CTGCGCCCGTACGCGATCACCAAGATGCTCGACCTGCTCCACCCGATGTACCAGCCGACCGCGGCCTACGGC
CACTTCGGTCGTCATCCGTTCGAGCTGACCGTGGACGGCGATACCTTCACCGCGTTCACCTGGGAGAAGACC
GACAAGGCCGCTCTCCTGCGCGACGCCGCCGGCCTCTGA
Translation:
MSEYSVFTSESVSEGHPDKIADQISDAVLDAIIAKDKYARVACETLVKTGVAIIAGEVTTSAWVDLEELVRK
VIIDIGYDSSDVGFDGATCGVLNIIGKQSVDINQGVDRAKPEDQGAGDQGLMFGYASNETDVLMPAPICFSH
RLVERQAEARKSGLLPWLRPDAKSQVTCRYEGGKVVGIDAVVLSTQHNPEVSYNDLRDGVMELIIKQVLPAE
LLHKDTQFHINPTGNFVIGGPVGDCGLTGRKIIVDSYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIV
AAGLAERCEIQVSYAIGVAQPTSISINTFGTGKVSDEKIVQLVREHFDLRPYAITKMLDLLHPMYQPTAAYG
HFGRHPFELTVDGDTFTAFTWEKTDKAALLRDAAGL*
AnnotationID:1489GeneID:1480
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 18:06:06
Gene Name:metK
Confidence Code:2
GeneProduct:methionine adenosyltransferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:S-adenosylmethionine synthetase
Functional Category Confidence Code:5
COGs:COG0192,pfam02773,pfam02772
Secondary Functional Category(ies):central intermediary metabolism
EC Number:2.5.1.6
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG0192, MetK, S-adenosylmethionine synthetase [Coenzyme metabolism]
CD-Length = 388 residues, 100.0% aligned
Score =  664 bits (1714), Expect = 0.0
Identities = 264/399 (66%), Positives = 308/399 (77%), Gaps = 14/399 (3%)

pfam02773, S-AdoMet_synt_C, S-adenosylmethionine synthetase, C-terminal domain. 
CD-Length = 138 residues,  97.1% aligned
Score =  230 bits (589), Expect = 1e-61
Identities = 94/134 (70%), Positives = 114/134 (85%)

pfam02772, S-AdoMet_synt_M, S-adenosylmethionine synthetase, central domain. 
CD-Length = 123 residues, 100.0% aligned
Score =  172 bits (436), Expect = 8e-44
Identities = 64/123 (52%), Positives = 86/123 (69%), Gaps = 4/123 (3%)
Genomic Context:
Comment:
ReferenceID:2963
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20108
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33850
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1480_cdd.html
URL:
ReferenceID:35295
Author/Investigator(s): Markham GD, DeParasis J, Gatmaitan J.
Title: The sequence of metK, the structural gene for S-adenosylmethionine synthetase in Escherichia coli.
PubMed: 6094561
MedLine:
Source:
J Biol Chem. 1984 Dec 10;259(23):14505-7.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6094561
Homologs By Global Alignment
Gene ID:1480

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2658 PA0546_tr translation of PA0546 396 99.99 99.99 0 2049.0
83950 gb|AAG03935.1|AE004491_2 (AE004491) methionine adenosyltransferase [Pseudomonas aeruginosa PAO1] 396 99.99 99.99 0 2049.0
83951 gb|AAN70534.1|AE016695_8 (AE016792) S-adenosylmethionine synthetase [Pseudomonas putida KT2440] 396 90.65 94.94 0 1864.0
83952 gb|AAO53927.1| (AE016857) S-adenosylmethionine synthetase [Pseudomonas syringae pv. tomato str. DC3000] 396 88.88 95.95 0 1861.0
83953 gb|AAM35701.1| (AE011713) methionine adenosyltransferase [Xanthomonas axonopodis pv. citri str. 306] 404 75.00 84.65 9 1553.0
GC ORFID: 44482How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0546Glimmer Score:
Start: 6416214Stop: 6415024
Length: 1191
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0546 translation of PA0546Homolog Bit Score 793.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6866 (ORF: BLASTX 721.0), t_PA0546 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGAATATTCCGTTTTCACCTCCGAGTCCGTGTCCGAAGGCCATCCGGACAAGATCGCGGACCAGATC
TCCGACGCGGTGCTGGACGCCATCATCGCCAAGGACAAGTACGCTCGCGTGGCATGCGAAACCCTGGTCAAG
ACCGGCGTGGCGATCATCGCCGGTGAAGTCACCACCTCCGCCTGGGTCGACCTGGAAGAGCTGGTGCGCAAG
GTCATCATCGACATCGGCTACGACAGCTCCGACGTCGGCTTCGATGGCGCCACCTGCGGCGTGCTGAACATC
ATCGGCAAGCAGTCGGTGGACATCAACCAGGGCGTCGACCGGGCCAAGCCGGAAGACCAGGGCGCCGGCGAC
CAGGGCCTGATGTTCGGCTACGCCAGCAACGAGACCGACGTGCTGATGCCGGCGCCGATCTGCTTCTCCCAC
CGCCTGGTCGAGCGCCAGGCCGAGGCGCGCAAGTCCGGCCTGCTGCCATGGCTGCGCCCGGACGCCAAGTCC
CAGGTGACCTGCCGCTACGAAGGCGGCAAGGTGGTCGGCATCGATGCGGTGGTGCTGTCCACCCAGCACAAC
CCGGAAGTCTCCTATAACGACCTGCGCGACGGCGTGATGGAGCTGATCATCAAGCAGGTGCTGCCGGCCGAG
CTGCTGCACAAGGACACCCAGTTCCACATCAACCCGACCGGCAACTTCGTGATCGGCGGCCCGGTCGGCGAC
TGCGGCCTGACCGGACGCAAGATCATCGTCGACTCCTACGGCGGCATGGCCCGCCACGGCGGCGGCGCGTTC
TCCGGCAAGGACCCGTCCAAGGTCGACCGCTCCGCCGCCTACGCCGGCCGCTACGTGGCGAAGAACATCGTC
GCCGCCGGCCTCGCCGAGCGTTGCGAGATCCAGGTTTCCTACGCCATCGGCGTGGCCCAGCCGACCTCGATC
TCGATCAACACCTTCGGCACCGGCAAGGTCAGCGACGAGAAGATCGTGCAACTGGTCCGCGAGCACTTCGAC
CTGCGCCCGTACGCGATCACCAAGATGCTCGACCTGCTCCACCCGATGTACCAGCCGACCGCGGCCTACGGC
CACTTCGGTCGTCATCCGTTCGAGCTGACCGTGGACGGCGATACCTTCACCGCGTTCACCTGGGAGAAGACC
GACAAGGCCGCTCTCCTGCGCGACGCCGCCGGCCTCTGA