ViewGene

Locus Name:
GeneID:
Location:

GeneID:148
TrivialName: PA14_49250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49250
PAO1 Ortholog Locus:PA1174
Sequence Length:2505
Protein Length:834
Start: 4373199
Stop: 4375703
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04563.1|AE004547_9 (AE004547) periplasmic nitrate reductase protein NapA [Pseudomonas aeruginosa PAO1]
Identities = 817/818 (99%), Positives = 817/818 (99%)
Sequence:
ATGAACCTCACCCGTCGTGAATTCGCCAAGGCCAACGCCGCCGCCATCGCCGCGGCGGCGGCCGGCCTGCCG
ATCCTGGTCCGCGCCAGCAACCTGGTGACCGAGGCGGACGTCACCAGCCTGGTCTGGAACAAGGCACCCTGC
CGCTTCTGCGGCACCGGTTGCAGCGTGATGGTCGCCACCCGCGACGGCCAGGTGGTGGCCACCCATGGCGAC
ATCAAGGCCGAGGTCAACCGCGGGATCAACTGCGTGAAGGGCTACTTCCTGTCGAAGATCATGTACGGCAGC
GACCGCCTGACCCGCCCGCTGCTGCGCATGAAGGACGGCAAGTTCGACAAGCAGGGCGAGTTCCAGCCGATC
AGTTGGGAACAGGCCTTCGACATCATGGCCGAGAAGTTCAAGGCCGCGCTCAAGGCCAAGGGACCGGAGTCG
GTCGGCATGTTCGGCTCCGGCCAGTGGACGGTCTGGGAAGGCTATGCGGCGAACAAGCTGTTCAAGGCCGGC
CTGCGCAGCAACAACATCGACCCCAACGCCCGCCACTGCATGGCCTCGGCGGTGATGGGCTTCATGCGCAGC
TTCGGCATGGACGAGCCGATGGGCTGCTACGACGACATCGAGGCCACCGACAGCTTCGTCCTCTGGGGCTCG
AACATGGCCGAGATGCACCCGGTGCTCTGGTCGCGGGTCACCGACCGCCGGCTCAGCGCGCCGCAGGTCAAG
GTCGCGGTGCTGTCCACCTTCGAGCACCGCAGCTTCGAGCTGGCCGACCTGCCCATGGTGTTCAAGCCGCAG
ACCGACCTGATCATCCTCAACTACATCGCCAACCACATCATCGAGAGCGGCGCGGTGAACCGCGACTTCGTC
GAGCGCCACGTGCGCTTCGCCCATGGCGCCGAGGACATCGGCTACGGCCTGCGCCCGGACGACCCGCTGGAG
AAGAAGGCGAAGAACGCCGACAAGGCCAACACCTGGAGCGACATCGACTTCAAGGCCTTCGCCGAGTTCGTC
AAGCCCTATACCCTGGAGCGCACCGCGCGCGAAAGCGGCGTGCCCGCCGAGCGGCTGAAGGCCCTCGCCGAA
CTCTACGCCGACCCCAAGCGCAAGGTGGTGTCGTTCTGGACCATGGGCTTCAACCAGCACACCCGCGGGGTC
TGGGCGAACAACCTGATCTACAACATCCACCTGCTCACCGGGAAGATCAGCGAACCGGGCAACAGCCCCTTC
TCGCTCACCGGCCAGCCCTCGGCCTGCGGCACCGCGCGCGAGGTCGGCACCTTCTCCCACCGGCTCCCCGCC
GACCTGGTGGTGACCAACCCGAAGCACCGGGAAACCGCGGAGAAGATCTGGAAGGTGCCGGCCGGGACCATC
CAGGAGAAGGTCGGCTTCCACGCCGTGCAGCAGAGCCGGATGCTCAACGACGGCGTGCTCAACGTCTACTGG
ACCCAGGTCAGCAACAACATGCAGGCCGGTCCCAACGTGATGCAGGAAGTGCTGCCCGGCTGGCGCAACCCG
GACAACTTCGTGATCGTCTCCGACGTCTACCCCACCGTCTCGGCCCAGGCCGCCGACCTGATCCTGCCCAGC
GCCATGTGGGTGGAGAAGGAAGGCGCCTTCGGCAATGCCGAGCGCCGCACGCAGTTCTGGCACCAGTTGGTG
AAGGCACCGGGCGAGGCGAAGTCCGACCTCTGGCAACTGGTGGAATTCTCCAAGCGCTTCACCACCGACGAG
GTCTGGCCCGCCGAACTGCTGGCGAAGGCCCCCGAGCTGAAGGGCAAGACCCTCTACGACGTGCTGTTCCGC
AACGGCCAGGTCGACCGCTTCCCGGCCAGCGACCTGGCCAAGGGCTACGCCAACGACGAGGTCGACGCATTC
GGCTTCTATATCCAGAAGGGGCTGTTCGAGGAATACGCCGCCTTCGGTCGCGGCCACGGCCACGACCTCGCC
CCCTTCGACGCCTACCACGAGGCGCGCGGCCTGCGCTGGCCGGTGGTGGACGGCAAGGAGACCCGCTGGCGC
TACCGCGAGGGCTACGACCCCTACGTGAGCAAGGGCAGCGGCGTGCAGTTCTATGGCTATCCGGACAAGAAG
GCGATCGTCTTCGCCCTGCCCTACGAGCCGCCGGCCGAGGCGCCGGACCAGGACTACCCGTTCTGGCTCGCC
ACCGGCCGGGTGCTCGAACACTGGCACACCGGGAGCATGACCGCGCGGGTCCCGGAGCTGTACAAGGCGGTG
CCCGACGCGCTGGTCTACATGCACCCGGAGGATGCGCGTCAGCTCAAGCTGCGCCGCGGCAGCGAAGTCAAG
GTGGTGAGCCGGCGCGGCGAGATCCGCGCGCGGGTCGAGACCCGCGGGCGCAACAAGCCGCCCCAGGGGCTG
GTGTTCGTGCCGTTCTTCGACGCCAACAAGCTGATCAACAAGGTCACCCTGGACGCCACCGACCCGATTTCC
AAGCAGACCGACTACAAGAAGTGCGCCGTTCGCATCGAACTGCTCAACCTGGCCTGA
Translation:
MNLTRREFAKANAAAIAAAAAGLPILVRASNLVTEADVTSLVWNKAPCRFCGTGCSVMVATRDGQVVATHGD
IKAEVNRGINCVKGYFLSKIMYGSDRLTRPLLRMKDGKFDKQGEFQPISWEQAFDIMAEKFKAALKAKGPES
VGMFGSGQWTVWEGYAANKLFKAGLRSNNIDPNARHCMASAVMGFMRSFGMDEPMGCYDDIEATDSFVLWGS
NMAEMHPVLWSRVTDRRLSAPQVKVAVLSTFEHRSFELADLPMVFKPQTDLIILNYIANHIIESGAVNRDFV
ERHVRFAHGAEDIGYGLRPDDPLEKKAKNADKANTWSDIDFKAFAEFVKPYTLERTARESGVPAERLKALAE
LYADPKRKVVSFWTMGFNQHTRGVWANNLIYNIHLLTGKISEPGNSPFSLTGQPSACGTAREVGTFSHRLPA
DLVVTNPKHRETAEKIWKVPAGTIQEKVGFHAVQQSRMLNDGVLNVYWTQVSNNMQAGPNVMQEVLPGWRNP
DNFVIVSDVYPTVSAQAADLILPSAMWVEKEGAFGNAERRTQFWHQLVKAPGEAKSDLWQLVEFSKRFTTDE
VWPAELLAKAPELKGKTLYDVLFRNGQVDRFPASDLAKGYANDEVDAFGFYIQKGLFEEYAAFGRGHGHDLA
PFDAYHEARGLRWPVVDGKETRWRYREGYDPYVSKGSGVQFYGYPDKKAIVFALPYEPPAEAPDQDYPFWLA
TGRVLEHWHTGSMTARVPELYKAVPDALVYMHPEDARQLKLRRGSEVKVVSRRGEIRARVETRGRNKPPQGL
VFVPFFDANKLINKVTLDATDPISKQTDYKKCAVRIELLNLA*
AnnotationID:158GeneID:148
AnnotatorUID: danlee
Modification Date/Time: 2006-03-21 20:08:23
Gene Name:napA
Confidence Code:2
GeneProduct:periplasmic nitrate reductase protein NapA
Cell Localization:(8) Periplasmic
Synonyms:
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd02754, COG0243
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Nitrogen metabolism.
Homology:
gi|84328645|ref|ZP_00976649.1|  COG0243: Anaerobic dehydrogenases, typically selenocysteine-containing 
[Pseudomonas aeruginosa 2192]
 gi|84322166|ref|ZP_00970511.1|  COG0243: Anaerobic dehydrogenases, typically selenocysteine-containing 
[Pseudomonas aeruginosa C3719]
Length=834

 Score = 1708 bits (4424),  Expect = 0.0, Method: Composition-based stats.
 Identities = 833/834 (99%), Positives = 833/834 (99%), Gaps = 0/834 (0%)

gi|9947098|gb|AAG04563.1|  periplasmic nitrate reductase protein NapA [Pseudomonas aeruginosa 
PAO1]
 gi|15596371|ref|NP_249865.1|  periplasmic nitrate reductase protein NapA [Pseudomonas aeruginosa 
PAO1]
 gi|81541557|sp|Q9I4G3|NAPA_PSEAE  Periplasmic nitrate reductase precursor
Length=829

 Score = 1696 bits (4391),  Expect = 0.0, Method: Composition-based stats.
 Identities = 812/813 (99%), Positives = 812/813 (99%), Gaps = 0/813 (0%)
Structural Features:
cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA.
             CD-Length = 565 residues, 100.0% aligned
             Score =  691 bits (1785), Expect = 0.0

COG0243, BisC, Anaerobic dehydrogenases, typically selenocysteine-containing 
[Energy production and conversion].
             CD-Length = 765 residues, 100.0% aligned
             Score =  545 bits (1406), Expect = 7e-156


Genomic Context:
Fourth of six ORF cluster: napEFDABC.
Comment:
First 11 amino acids of PAO1 PA1174 and first 16 amino acids of PA14 GID148  (PA14_49250) differ.
However, N-terminus matches that of strains 2192 and C3719.
ReferenceID:299
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:16968
Author/Investigator(s):
Title:
PubMed:
MedLine:
Source:
NCBI Conserved Domain Search
Reference Type:Blast (text/plain)
Data:napA_CDS.cgi
URL:
ReferenceID:17441
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:148

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
18046 gb|AAG04563.1|AE004547_9 (AE004547) periplasmic nitrate reductase protein NapA [Pseudomonas aeruginosa PAO1] 834 98.32 98.32 5 4341.0
269 PA1174_tr translation of PA1174 834 98.20 98.32 5 4337.0
18047 dbj|BAC52303.1| (AP005960) periplasmic nitrate reductase large subunit precursor [Bradyrhizobium japonicum USDA 110] 837 73.59 86.14 3 3427.0
18048 gb|AAG31648.2|AF314590_2 (AF314590) periplasmic nitrate reductase large subunit precursor [Bradyrhizobium japonicum] 839 73.30 85.69 6 3399.0
18049 emb|CAE37995.1| (BX640431) periplasmic nitrate reductase precursor [Bordetella parapertussis] 834 73.26 84.41 3 3374.0
GC ORFID: 43150How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1174Glimmer Score:
Start: 580709Stop: 578205
Length: 2505
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1174 translation of PA1174Homolog Bit Score 1677.0
Other Homologs: t_PA1174 (ORF: GLIMMER)
GC ORF Sequence
ATGAACCTCACCCGTCGTGAATTCGCCAAGGCCAACGCCGCCGCCATCGCCGCGGCGGCGGCCGGCCTGCCG
ATCCTGGTCCGCGCCAGCAACCTGGTGACCGAGGCGGACGTCACCAGCCTGGTCTGGAACAAGGCACCCTGC
CGCTTCTGCGGCACCGGTTGCAGCGTGATGGTCGCCACCCGCGACGGCCAGGTGGTGGCCACCCATGGCGAC
ATCAAGGCCGAGGTCAACCGCGGGATCAACTGCGTGAAGGGCTACTTCCTGTCGAAGATCATGTACGGCAGC
GACCGCCTGACCCGCCCGCTGCTGCGCATGAAGGACGGCAAGTTCGACAAGCAGGGCGAGTTCCAGCCGATC
AGTTGGGAACAGGCCTTCGACATCATGGCCGAGAAGTTCAAGGCCGCGCTCAAGGCCAAGGGACCGGAGTCG
GTCGGCATGTTCGGCTCCGGCCAGTGGACGGTCTGGGAAGGCTATGCGGCGAACAAGCTGTTCAAGGCCGGC
CTGCGCAGCAACAACATCGACCCCAACGCCCGCCACTGCATGGCCTCGGCGGTGATGGGCTTCATGCGCAGC
TTCGGCATGGACGAGCCGATGGGCTGCTACGACGACATCGAGGCCACCGACAGCTTCGTCCTCTGGGGCTCG
AACATGGCCGAGATGCACCCGGTGCTCTGGTCGCGGGTCACCGACCGCCGGCTCAGCGCGCCGCAGGTCAAG
GTCGCGGTGCTGTCCACCTTCGAGCACCGCAGCTTCGAGCTGGCCGACCTGCCCATGGTGTTCAAGCCGCAG
ACCGACCTGATCATCCTCAACTACATCGCCAACCACATCATCGAGAGCGGCGCGGTGAACCGCGACTTCGTC
GAGCGCCACGTGCGCTTCGCCCATGGCGCCGAGGACATCGGCTACGGCCTGCGCCCGGACGACCCGCTGGAG
AAGAAGGCGAAGAACGCCGACAAGGCCAACACCTGGAGCGACATCGACTTCAAGGCCTTCGCCGAGTTCGTC
AAGCCCTATACCCTGGAGCGCACCGCGCGCGAAAGCGGCGTGCCCGCCGAGCGGCTGAAGGCCCTCGCCGAA
CTCTACGCCGACCCCAAGCGCAAGGTGGTGTCGTTCTGGACCATGGGCTTCAACCAGCACACCCGCGGGGTC
TGGGCGAACAACCTGATCTACAACATCCACCTGCTCACCGGGAAGATCAGCGAACCGGGCAACAGCCCCTTC
TCGCTCACCGGCCAGCCCTCGGCCTGCGGCACCGCGCGCGAGGTCGGCACCTTCTCCCACCGGCTCCCCGCC
GACCTGGTGGTGACCAACCCGAAGCACCGGGAAACCGCGGAGAAGATCTGGAAGGTGCCGGCCGGGACCATC
CAGGAGAAGGTCGGCTTCCACGCCGTGCAGCAGAGCCGGATGCTCAACGACGGCGTGCTCAACGTCTACTGG
ACCCAGGTCAGCAACAACATGCAGGCCGGTCCCAACGTGATGCAGGAAGTGCTGCCCGGCTGGCGCAACCCG
GACAACTTCGTGATCGTCTCCGACGTCTACCCCACCGTCTCGGCCCAGGCCGCCGACCTGATCCTGCCCAGC
GCCATGTGGGTGGAGAAGGAAGGCGCCTTCGGCAATGCCGAGCGCCGCACGCAGTTCTGGCACCAGTTGGTG
AAGGCACCGGGCGAGGCGAAGTCCGACCTCTGGCAACTGGTGGAATTCTCCAAGCGCTTCACCACCGACGAG
GTCTGGCCCGCCGAACTGCTGGCGAAGGCCCCCGAGCTGAAGGGCAAGACCCTCTACGACGTGCTGTTCCGC
AACGGCCAGGTCGACCGCTTCCCGGCCAGCGACCTGGCCAAGGGCTACGCCAACGACGAGGTCGACGCATTC
GGCTTCTATATCCAGAAGGGGCTGTTCGAGGAATACGCCGCCTTCGGTCGCGGCCACGGCCACGACCTCGCC
CCCTTCGACGCCTACCACGAGGCGCGCGGCCTGCGCTGGCCGGTGGTGGACGGCAAGGAGACCCGCTGGCGC
TACCGCGAGGGCTACGACCCCTACGTGAGCAAGGGCAGCGGCGTGCAGTTCTATGGCTATCCGGACAAGAAG
GCGATCGTCTTCGCCCTGCCCTACGAGCCGCCGGCCGAGGCGCCGGACCAGGACTACCCGTTCTGGCTCGCC
ACCGGCCGGGTGCTCGAACACTGGCACACCGGGAGCATGACCGCGCGGGTCCCGGAGCTGTACAAGGCGGTG
CCCGACGCGCTGGTCTACATGCACCCGGAGGATGCGCGTCAGCTCAAGCTGCGCCGCGGCAGCGAAGTCAAG
GTGGTGAGCCGGCGCGGCGAGATCCGCGCGCGGGTCGAGACCCGCGGGCGCAACAAGCCGCCCCAGGGGCTG
GTGTTCGTGCCGTTCTTCGACGCCAACAAGCTGATCAACAAGGTCACCCTGGACGCCACCGACCCGATTTCC
AAGCAGACCGACTACAAGAAGTGCGCCGTTCGCATCGAACTGCTCAACCTGGCCTGA