ViewGene
Locus Name:
GeneID:
Location:

GeneID:1476
TrivialName: PA14_34300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34300
PAO1 Ortholog Locus:PA2347
Sequence Length:1218
Protein Length:405
Start: 3051271
Stop: 3050054
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05735.1|AE004661_2 (AE004661) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 405/405 (100%), Positives = 405/405 (100%)
Sequence:
ATGAGCCTCGCACACGCTACGCGCGACAATCCCACGGCCGCTGCCCATCGCATCGGCAGCGACGACGAAGCC
CTGGAAACGGCCCGCGAGCTGGCCGCCCTGTTCGCCCGCGAAAGCATCCAGCGCGACCGCGAGCGGCGCCTG
CCGCTGGAAGAACTGGAACTGTTCTCCCGCTCCGGCCTGTGGGGCATCGCGGTGCCCCGCGAATACGGCGGG
GCCGGCGTCTCGCGGGTGACCCTGGCGAAGGTGGTGGCGATCGTCAGCGCCGCCGACAGTTCCCTGGGGCAG
ATTCCGCAGAACCATTTCTACGCCCTCGAAGTGCTGCGGGTGAACGGCTCGCCGGCGCAGAAAGGTCGCCTG
TTCGGCGCCGCCCTGGCCGGCGAGCGTTTCGGCAACGCCCTGGCCGAGATCGGCACGCGTACCGCCAGCGAG
CGCCGCACCCGCCTGCGCGCCGACGGCGACGGCTACCGCCTGGACGGGCGCAAGTTCTACTGCACCGGCGCA
CTCTACGCGCAGCGGGTGCCGACCCTGGCGGTGGACGACGAGGGCCGCCAGCAACTGGCCTTCGTCCCGCGC
GACAGCGCCGGGCTGGAAATCGTCGACGACTGGTCCGGCTTCGGTCAACGCACCACCGGCAGCGGTTCGGCG
CTGTTCGACCGGGTAGCGGTGGCCGCCGAGGACGTGGTCTCGTTCCAGGACGCCTTCGAGCGCCCGACCACC
GTCGGCCCGCTGGCGCAGATCCTCCACGCGGCGATCGACGCCGGGATCGCCCGCGGCGCCTTCGAGGACACC
CTGCGTTTCGTCCGCGAGCGCGCCCGGCCCTGGGTCGACTCCGGCGTCGACAAGGCCAGCGACGACCCACTG
ACCATCCACGAGATCGGCCGCCTGGCGATCCGCCTGCACGCCGCCGAAGCGCTGCTGGAGCGTGCCGGGCGG
GTGCTCGACCGGGCCACCGCCGAGCCGGACGCGGAAAGCGTGGCGGCCGCCTCGATCGCCGTCGCCGAAGCC
CGCGCGCTGACCACCGAGGTCGCCCTGTTGGCCGGCAGCAAGCTGATCGAGCTTGGCGGCAGCCGCGCCTGT
CTCGCCGAACTCGGTCTCGACCGCCACTGGCGCAACGCCCGCGTACACACCCTGCACGACCCGGTGCGCTGG
AAGTACCACGCGGTCGGCGACTACTACCTCAACGGCCGCCTGCCGCCACGCCGCGGCACGCTCTGA
Translation:
MSLAHATRDNPTAAAHRIGSDDEALETARELAALFARESIQRDRERRLPLEELELFSRSGLWGIAVPREYGG
AGVSRVTLAKVVAIVSAADSSLGQIPQNHFYALEVLRVNGSPAQKGRLFGAALAGERFGNALAEIGTRTASE
RRTRLRADGDGYRLDGRKFYCTGALYAQRVPTLAVDDEGRQQLAFVPRDSAGLEIVDDWSGFGQRTTGSGSA
LFDRVAVAAEDVVSFQDAFERPTTVGPLAQILHAAIDAGIARGAFEDTLRFVRERARPWVDSGVDKASDDPL
TIHEIGRLAIRLHAAEALLERAGRVLDRATAEPDAESVAAASIAVAEARALTTEVALLAGSKLIELGGSRAC
LAELGLDRHWRNARVHTLHDPVRWKYHAVGDYYLNGRLPPRRGTL*
AnnotationID:1485GeneID:1476
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 16:04:50
Gene Name:
Confidence Code:3
GeneProduct:putative monooxygenase, DszC family
Cell Localization:()
Synonyms:PA2347
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative acyl-CoA dehydrogenase family protein
Functional Category Confidence Code:5
COGs:cd01163
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58611.1| (AE016874) acyl-CoA dehydrogenase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 401

 Score =  568 bits (1465), Expect = e-161
 Identities = 283/398 (71%), Positives = 325/398 (81%), Gaps = 2/398 (0%)

>gb|AAN65855.1|AE016213_11 (AE016774) monooxygenase, DszC family [Pseudomonas putida KT2440]
          Length = 406

 Score =  564 bits (1454), Expect = e-160
 Identities = 277/388 (71%), Positives = 322/388 (82%)

>gb|AAO56477.1| (AE016866) acyl-CoA dehydrogenase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 426

 Score =  421 bits (1082), Expect = e-117
 Identities = 215/401 (53%), Positives = 275/401 (68%), Gaps = 1/401 (0%)








 
Structural Features:
cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C (DszC)
CD-Length = 377 residues,  99.5% aligned
Score =  376 bits (968), Expect = 2e-105






   
Genomic Context:






   
Comment:


















    ReferenceID:2955




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20100




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32895




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1476_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1476
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2650
                           PA2347_tr
                           translation of PA2347
                           405
                           99.99
                           99.99
                           0
                           2049.0
     

     
     
83748
                           gb|AAG05735.1|AE004661_2
                           (AE004661) hypothetical protein PA2347 [Pseudomonas aeruginosa PAO1]
                           405
                           99.99
                           99.99
                           0
                           2049.0
     

     
     
83749
                           gb|AAO58611.1|
                           (AE016874) acyl-CoA dehydrogenase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           407
                           70.02
                           80.34
                           8
                           1464.0
     

     
     
83750
                           gb|AAN65855.1|AE016213_11
                           (AE016774) monooxygenase, DszC family [Pseudomonas putida KT2440]
                           408
                           68.62
                           80.39
                           5
                           1450.0
     

     
     
2651
                           PA2325_tr
                           translation of PA2325
                           411
                           55.96
                           69.82
                           6
                           1164.0
     

     






      

          
GC ORFID: 44478How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2347Glimmer Score: 

          
Start: 1902645Stop: 1903862

          
Length: 1218


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2347 translation of PA2347Homolog Bit Score 793.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3829 (ORF: BLASTX 569.0), t_PA2325 (ORF: BLASTX 456.0), t_PA2346 (ORF: BLASTX 427.0), psyr_15may02_Scaffold7_revised_gene7330 (ORF: BLASTX 422.0), t_PA2347 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCTCGCACACGCTACGCGCGACAATCCCACGGCCGCTGCCCATCGCATCGGCAGCGACGACGAAGCC 
CTGGAAACGGCCCGCGAGCTGGCCGCCCTGTTCGCCCGCGAAAGCATCCAGCGCGACCGCGAGCGGCGCCTG 
CCGCTGGAAGAACTGGAACTGTTCTCCCGCTCCGGCCTGTGGGGCATCGCGGTGCCCCGCGAATACGGCGGG 
GCCGGCGTCTCGCGGGTGACCCTGGCGAAGGTGGTGGCGATCGTCAGCGCCGCCGACAGTTCCCTGGGGCAG 
ATTCCGCAGAACCATTTCTACGCCCTCGAAGTGCTGCGGGTGAACGGCTCGCCGGCGCAGAAAGGTCGCCTG 
TTCGGCGCCGCCCTGGCCGGCGAGCGTTTCGGCAACGCCCTGGCCGAGATCGGCACGCGTACCGCCAGCGAG 
CGCCGCACCCGCCTGCGCGCCGACGGCGACGGCTACCGCCTGGACGGGCGCAAGTTCTACTGCACCGGCGCA 
CTCTACGCGCAGCGGGTGCCGACCCTGGCGGTGGACGACGAGGGCCGCCAGCAACTGGCCTTCGTCCCGCGC 
GACAGCGCCGGGCTGGAAATCGTCGACGACTGGTCCGGCTTCGGTCAACGCACCACCGGCAGCGGTTCGGCG 
CTGTTCGACCGGGTAGCGGTGGCCGCCGAGGACGTGGTCTCGTTCCAGGACGCCTTCGAGCGCCCGACCACC 
GTCGGCCCGCTGGCGCAGATCCTCCACGCGGCGATCGACGCCGGGATCGCCCGCGGCGCCTTCGAGGACACC 
CTGCGTTTCGTCCGCGAGCGCGCCCGGCCCTGGGTCGACTCCGGCGTCGACAAGGCCAGCGACGACCCACTG 
ACCATCCACGAGATCGGCCGCCTGGCGATCCGCCTGCACGCCGCCGAAGCGCTGCTGGAGCGTGCCGGGCGG 
GTGCTCGACCGGGCCACCGCCGAGCCGGACGCGGAAAGCGTGGCGGCCGCCTCGATCGCCGTCGCCGAAGCC 
CGCGCGCTGACCACCGAGGTCGCCCTGTTGGCCGGCAGCAAGCTGATCGAGCTTGGCGGCAGCCGCGCCTGT 
CTCGCCGAACTCGGTCTCGACCGCCACTGGCGCAACGCCCGCGTACACACCCTGCACGACCCGGTGCGCTGG 
AAGTACCACGCGGTCGGCGACTACTACCTCAACGGCCGCCTGCCGCCACGCCGCGGCACGCTCTGA