ViewGene
Locus Name:
GeneID:
Location:

GeneID:1475
TrivialName: PA14_34710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34710
PAO1 Ortholog Locus:PA2314
Sequence Length:1254
Protein Length:417
Start: 3083158
Stop: 3084411
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05702.1|AE004657_9 (AE004657) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 409/417 (98%), Positives = 410/417 (98%)
Sequence:
ATGGGACGCCGCGAAGCATTTCCGGAGAACGCCGGGGCCGCTGCGTCGGCCGTGGCGCCGCGGCTGCCGCTG
AGCGCGTTGCTGGCGATGGCGATGTCCGGCTTCGTCGCCATTCTCAGCGAAACCCTGCCGGCCGGCCTGCTG
CCGCAAATCGGCGCGGGGCTGGCGGTCAGCGAGGCGCTGGCCGGGCAACTGGTCAGCGTCTATGCCCTGGGT
TCGCTACTGGCCGCGTTGCCGGCGGCGAGCCTGACCCAGGGCTGGCGGCGGCGCCGGGTGCTGCTGCTGGCG
CTGCTGATCTTCTTCGTCTGCAACAGCTTCACCGCCGTTTCCTCGGATTACCGCCTGACCCTGCTGGCGCGC
TTCGGCAGCGGCGTCGCCGCCGGCCTCGCCTGGGGCCTGCTGGCCGGCTACGCGCGGCGCCTGGTGCCGCCG
GAGCAGCAAGGGCGGGCGCTGGCGGTGGCCATGCTCGGTGCGCCGCTGGCGTTGTCGCTCGGCGTTCCGCTG
GGCACCTGGCTGGGCGGCCTGCTCGGCTGGCGCTGGGCCTTCGGCCTGTTGTCGCTGACCGCGCTGTTGCTG
GTCGGCTGGGTGCTGCACAGCGTGCCGGACTTCCCTGGCCAGCCGGCCGGGCGGCGCCTGCGCCTGCTCGGG
GTGCTGCGCACGCCGGGCGTGCGTCCGGTATTGCTGGTGATCGTCGCCTGGGTGCTGGCGCACAACATCCTC
TACACCTATATCGCGCCGTTCCTCGCCAAGGTCGGCCTGGGCGCCTCGGTGGACCTGGCCCTGCTGGTATTC
GGCAGCGCCGCGGTGGCGGGAATCTGGCTGGTCGGCGCGCTGGTCGACCGGCACCTGCGGCGGATGGTCCTG
GCCAGCCTGGCGCTGTTCGCCGTGGCGGCGCTGGCGCTGTGCCTGGGCGCTCGCTGGAGCTGGCTGGCGTTC
GCCGGCCTGGCCCTCTGGGGACTGACGTTCGGTGGCGCGGCGACGCTGCTGCAGACCGCCTCGGCGGACGCC
GCCGGGGAGGGCGCCGACCTGGCCCAGTCGATGATCGTGGTGGCCTGGAACCTGGCCATCGCCGGCGGCGGA
GCGTTGGGCGGCATGGTGTTGCAGCGCTGGGGCAGCGAGATGCTGCCCTGGACCCTGCTGCCGCTGATCGGC
CTGGCCGCGGCGCTGGCCTGGGGCAATGCCGCGCACGCGTTCCGCGTCGGCCCGCGCGGTTTCCCCAGGGCA
TCGTCCGAACGCCGGAAAGCGGCGGAATAG
Translation:
MGRREAFPENAGAAASAVAPRLPLSALLAMAMSGFVAILSETLPAGLLPQIGAGLAVSEALAGQLVSVYALG
SLLAALPAASLTQGWRRRRVLLLALLIFFVCNSFTAVSSDYRLTLLARFGSGVAAGLAWGLLAGYARRLVPP
EQQGRALAVAMLGAPLALSLGVPLGTWLGGLLGWRWAFGLLSLTALLLVGWVLHSVPDFPGQPAGRRLRLLG
VLRTPGVRPVLLVIVAWVLAHNILYTYIAPFLAKVGLGASVDLALLVFGSAAVAGIWLVGALVDRHLRRMVL
ASLALFAVAALALCLGARWSWLAFAGLALWGLTFGGAATLLQTASADAAGEGADLAQSMIVVAWNLAIAGGG
ALGGMVLQRWGSEMLPWTLLPLIGLAAALAWGNAAHAFRVGPRGFPRASSERRKAAE*
AnnotationID:1484GeneID:1475
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 13:01:25
Gene Name:
Confidence Code:3
GeneProduct:putative major facilitator family transporter
Cell Localization:()
Synonyms:PA2314
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2814
Secondary Functional Category(ies):carbohydrate transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56557.1| (AE016867) major facilitator family transporter [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 375

 Score =  451 bits (1161), Expect = e-126
 Identities = 229/372 (61%), Positives = 281/372 (75%)

>gb|AAF84537.1|AE003996_6 (AE003996) transport protein [Xylella fastidiosa 9a5c]
          Length = 447

 Score =  396 bits (1018), Expect = e-109
 Identities = 212/390 (54%), Positives = 267/390 (68%)






 
Structural Features:
COG2814, AraJ, Arabinose efflux permease 
[Carbohydrate transport and metabolism]
CD-Length = 394 residues, 100.0% aligned
Score =  223 bits (569), Expect = 3e-59
Identities = 170/394 (43%), Positives = 215/394 (54%), Gaps = 4/394 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2953




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20098




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32479




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1475_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1475
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2649
                           PA2314_tr
                           translation of PA2314
                           417
                           98.08
                           98.32
                           0
                           2048.0
     

     
     
83741
                           gb|AAG05702.1|AE004657_9
                           (AE004657) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           417
                           98.08
                           98.32
                           0
                           2048.0
     

     
     
83742
                           gb|AAO56557.1|
                           (AE016867) major facilitator family transporter [Pseudomonas syringae pv. tomato str. DC3000]
                           417
                           54.91
                           67.38
                           42
                           1154.0
     

     
     
83744
                           gb|AAN68004.1|AE016432_13
                           (AE016783) major facilitator family transporter [Pseudomonas putida KT2440]
                           422
                           52.36
                           64.21
                           27
                           1030.0
     

     
     
83743
                           emb|CAE15017.1|
                           (BX571867) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           417
                           52.27
                           69.30
                           18
                           1106.0
     

     






      

          
GC ORFID: 44477How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2314Glimmer Score: 

          
Start: 1870758Stop: 1869505

          
Length: 1254


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2314 translation of PA2314Homolog Bit Score 793.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7300 (ORF: BLASTX 457.0), t_PA2314 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGACGCCGCGAAGCATTTCCGGAGAACGCCGGGGCCGCTGCGTCGGCCGTGGCGCCGCGGCTGCCGCTG 
AGCGCGTTGCTGGCGATGGCGATGTCCGGCTTCGTCGCCATTCTCAGCGAAACCCTGCCGGCCGGCCTGCTG 
CCGCAAATCGGCGCGGGGCTGGCGGTCAGCGAGGCGCTGGCCGGGCAACTGGTCAGCGTCTATGCCCTGGGT 
TCGCTACTGGCCGCGTTGCCGGCGGCGAGCCTGACCCAGGGCTGGCGGCGGCGCCGGGTGCTGCTGCTGGCG 
CTGCTGATCTTCTTCGTCTGCAACAGCTTCACCGCCGTTTCCTCGGATTACCGCCTGACCCTGCTGGCGCGC 
TTCGGCAGCGGCGTCGCCGCCGGCCTCGCCTGGGGCCTGCTGGCCGGCTACGCGCGGCGCCTGGTGCCGCCG 
GAGCAGCAAGGGCGGGCGCTGGCGGTGGCCATGCTCGGTGCGCCGCTGGCGTTGTCGCTCGGCGTTCCGCTG 
GGCACCTGGCTGGGCGGCCTGCTCGGCTGGCGCTGGGCCTTCGGCCTGTTGTCGCTGACCGCGCTGTTGCTG 
GTCGGCTGGGTGCTGCACAGCGTGCCGGACTTCCCTGGCCAGCCGGCCGGGCGGCGCCTGCGCCTGCTCGGG 
GTGCTGCGCACGCCGGGCGTGCGTCCGGTATTGCTGGTGATCGTCGCCTGGGTGCTGGCGCACAACATCCTC 
TACACCTATATCGCGCCGTTCCTCGCCAAGGTCGGCCTGGGCGCCTCGGTGGACCTGGCCCTGCTGGTATTC 
GGCAGCGCCGCGGTGGCGGGAATCTGGCTGGTCGGCGCGCTGGTCGACCGGCACCTGCGGCGGATGGTCCTG 
GCCAGCCTGGCGCTGTTCGCCGTGGCGGCGCTGGCGCTGTGCCTGGGCGCTCGCTGGAGCTGGCTGGCGTTC 
GCCGGCCTGGCCCTCTGGGGACTGACGTTCGGTGGCGCGGCGACGCTGCTGCAGACCGCCTCGGCGGACGCC 
GCCGGGGAGGGCGCCGACCTGGCCCAGTCGATGATCGTGGTGGCCTGGAACCTGGCCATCGCCGGCGGCGGA 
GCGTTGGGCGGCATGGTGTTGCAGCGCTGGGGCAGCGAGATGCTGCCCTGGACCCTGCTGCCGCTGATCGGC 
CTGGCCGCGGCGCTGGCCTGGGGCAATGCCGCGCACGCGTTCCGCGTCGGCCCGCGCGGTTTCCCCAGGGCA 
TCGTCCGAACGCCGGAAAGCGGCGGAATAG