ViewGene
Locus Name:
GeneID:
Location:

GeneID:1474
TrivialName: PA14_44700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44700
PAO1 Ortholog Locus:PA1525
Sequence Length:1134
Protein Length:377
Start: 3984136
Stop: 3985269
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04914.1|AE004581_1 (AE004581) alkane-1-monooxygenase 2 [Pseudomonas aeruginosa PAO1]
Identities = 377/377 (100%), Positives = 377/377 (100%)
Sequence:
ATGTTTGCCTCGCTTTCCTCTGCCTGGATGCTGCGTCTGAAAAAGTACGGCTACTGGATCTGGCTGATCGCG
GTGCTCGGCATTCCGCTCAGCTACTGGTGGTCGCTCGGTAGCGACTATCCCAACGCCTGGCCCTGGCTGGTG
ATCAGCGTGGTGTTCGGGCTGATCCCGATCCTCGATGCCATCGTCGGCCGCGATCCAGCCAACCCCGAGGAA
GCCAGCGAAGTGCCGGAGATGGAAGCACAGGGCTACTACCGCGTACTGTCCCTGGCCACCGTCCCGCTGTTG
CTGGGCATGCTCGTCTGGTCCGGCTGGATCCTCGCCCACGAGACCCGCTGGGACTGGGTCGGCCAACTGGGC
TGGATCCTGTCGGTGGGCACCGTGATGGGCGCCATCGGCATCACCGTCTCCCACGAACTGATCCACAAGGAC
CCGCAACTGGAACAGAACGCCGGCGGCCTGCTGCTGGCGGCGGTGTGCTATGCCGGCTTCAAGGTCGAACAC
GTGCGCGGCCACCATGTACACGTCTCGACCCCGGAAGATGCCTCGTCCTCGCGCTACGGCCAGAGCCTCTAC
TCGTTCCTCCCGCACGCCTACAAGCACAACTTCCTCAACGCCTGGCGCCTGGAGGCCGAGCGCCTGAAGCGC
AAGGGCCTGCCGGCCCTGCACTGGCGCAACGAGCTGATCTGGTGGTACGCCATCAGCGCCCTCTTCCTGCTC
GGCTTCAGCCTGGCCTTCGGCTGGCTGGGAGCGATCTTCTTCCTCGGCCAGTCGGTGATGGCCTTCACCCTG
CTGGAGATCGTCAACTACGTCGAGCACTACGGCCTGCATCGGCGGCGTCTGGACAACGGCCGCTACGAACGC
ACCACGCCGGAACACTCGTGGAACAGCAATTTCCTCCTGACCAACCTGTTCCTTTTCCACCTGCAGCGCCAT
TCCGACCACCATGCCTACGCCAAGCGCCGCTACCAGGTGCTGCGCCACTACGACAGCAGCCCGCAACTGCCC
AACGGCTACGCCGGGATGATCGTCCTCGCCCTGTTCCCACCGCTCTGGCGCGCGGTGATGGACCCGAAGGTG
CGCGCCTACTATGCCGGCGAGGAATACCAGCTTACCGACACCCAGCGCATCTGA
Translation:
MFASLSSAWMLRLKKYGYWIWLIAVLGIPLSYWWSLGSDYPNAWPWLVISVVFGLIPILDAIVGRDPANPEE
ASEVPEMEAQGYYRVLSLATVPLLLGMLVWSGWILAHETRWDWVGQLGWILSVGTVMGAIGITVSHELIHKD
PQLEQNAGGLLLAAVCYAGFKVEHVRGHHVHVSTPEDASSSRYGQSLYSFLPHAYKHNFLNAWRLEAERLKR
KGLPALHWRNELIWWYAISALFLLGFSLAFGWLGAIFFLGQSVMAFTLLEIVNYVEHYGLHRRRLDNGRYER
TTPEHSWNSNFLLTNLFLFHLQRHSDHHAYAKRRYQVLRHYDSSPQLPNGYAGMIVLALFPPLWRAVMDPKV
RAYYAGEEYQLTDTQRI*
AnnotationID:1483GeneID:1474
AnnotatorUID: danlee
Modification Date/Time: 2004-02-04 17:05:27
Gene Name:alkB2
Confidence Code:1
GeneProduct: alkane-1-monooxygenase 2
Cell Localization:()
Synonyms:alkB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Aliphatic compound catabolism.
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2951




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20096




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37939




  
Author/Investigator(s):
        Smits TH, Witholt B, van Beilen JB.





  
Title:
        Functional characterization of genes involved in alkane oxidation by Pseudomonas aeruginosa.




  
PubMed:
        14574114


MedLine:
        




    
Source:
Antonie Van Leeuwenhoek. 2003;84(3):193-200.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14574114

















    ReferenceID:37940




  
Author/Investigator(s):
        Belhaj A, Desnoues N, Elmerich C.





  
Title:
        Alkane biodegradation in Pseudomonas aeruginosa strains isolated from a polluted zone: identification of alkB and alkB-related genes.




  
PubMed:
        12234007


MedLine:
        




    
Source:
Res Microbiol. 2002 Jul-Aug;153(6):339-44.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12234007

















    ReferenceID:37941




  
Author/Investigator(s):
        Kok M, Oldenhuis R, van der Linden MP, Raatjes P, Kingma J, van Lelyveld PH, Witholt B.





  
Title:
        The Pseudomonas oleovorans alkane hydroxylase gene. Sequence and expression.




  
PubMed:
        2647718


MedLine:
        




    
Source:
J Biol Chem. 1989 Apr 5;264(10):5435-41.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=89174581&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:1474
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2647
                           PA1525_tr
                           translation of PA1525
                           377
                           99.99
                           99.99
                           0
                           2047.0
     

     
     
83690
                           gb|AAG04914.1|AE004581_1
                           (AE004581) alkane-1-monooxygenase 2 [Pseudomonas aeruginosa PAO1]
                           377
                           99.99
                           99.99
                           0
                           2047.0
     

     
     
2648
                           PA2574_tr
                           translation of PA2574
                           382
                           66.49
                           80.62
                           5
                           1452.0
     

     
     
83691
                           gb|AAG05962.1|AE004685_8
                           (AE004685) alkane-1-monooxygenase [Pseudomonas aeruginosa PAO1]
                           382
                           66.49
                           80.62
                           5
                           1452.0
     

     
     
83694
                           emb|CAC86946.1|
                           (AJ344081) putative alkane-1-hydroxylase [Pseudomonas aeruginosa]
                           377
                           63.92
                           63.92
                           136
                           1290.0
     

     






      

          
GC ORFID: 44476How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1525Glimmer Score: 

          
Start: 969773Stop: 968640

          
Length: 1134


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1525 translation of PA1525Homolog Bit Score 793.0

          
Other Homologs:  t_PA2574 (ORF: BLASTX 565.0), t_PA1525 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTTGCCTCGCTTTCCTCTGCCTGGATGCTGCGTCTGAAAAAGTACGGCTACTGGATCTGGCTGATCGCG 
GTGCTCGGCATTCCGCTCAGCTACTGGTGGTCGCTCGGTAGCGACTATCCCAACGCCTGGCCCTGGCTGGTG 
ATCAGCGTGGTGTTCGGGCTGATCCCGATCCTCGATGCCATCGTCGGCCGCGATCCAGCCAACCCCGAGGAA 
GCCAGCGAAGTGCCGGAGATGGAAGCACAGGGCTACTACCGCGTACTGTCCCTGGCCACCGTCCCGCTGTTG 
CTGGGCATGCTCGTCTGGTCCGGCTGGATCCTCGCCCACGAGACCCGCTGGGACTGGGTCGGCCAACTGGGC 
TGGATCCTGTCGGTGGGCACCGTGATGGGCGCCATCGGCATCACCGTCTCCCACGAACTGATCCACAAGGAC 
CCGCAACTGGAACAGAACGCCGGCGGCCTGCTGCTGGCGGCGGTGTGCTATGCCGGCTTCAAGGTCGAACAC 
GTGCGCGGCCACCATGTACACGTCTCGACCCCGGAAGATGCCTCGTCCTCGCGCTACGGCCAGAGCCTCTAC 
TCGTTCCTCCCGCACGCCTACAAGCACAACTTCCTCAACGCCTGGCGCCTGGAGGCCGAGCGCCTGAAGCGC 
AAGGGCCTGCCGGCCCTGCACTGGCGCAACGAGCTGATCTGGTGGTACGCCATCAGCGCCCTCTTCCTGCTC 
GGCTTCAGCCTGGCCTTCGGCTGGCTGGGAGCGATCTTCTTCCTCGGCCAGTCGGTGATGGCCTTCACCCTG 
CTGGAGATCGTCAACTACGTCGAGCACTACGGCCTGCATCGGCGGCGTCTGGACAACGGCCGCTACGAACGC 
ACCACGCCGGAACACTCGTGGAACAGCAATTTCCTCCTGACCAACCTGTTCCTTTTCCACCTGCAGCGCCAT 
TCCGACCACCATGCCTACGCCAAGCGCCGCTACCAGGTGCTGCGCCACTACGACAGCAGCCCGCAACTGCCC 
AACGGCTACGCCGGGATGATCGTCCTCGCCCTGTTCCCACCGCTCTGGCGCGCGGTGATGGACCCGAAGGTG 
CGCGCCTACTATGCCGGCGAGGAATACCAGCTTACCGACACCCAGCGCATCTGA