ViewGene

Locus Name:
GeneID:
Location:

GeneID:1473
TrivialName: PA14_04370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04370
PAO1 Ortholog Locus:PA0334
Sequence Length:1242
Protein Length:413
Start: 391361
Stop: 390120
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03723.1|AE004471_6 (AE004471) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 408/413 (98%), Positives = 409/413 (99%), Gaps = 1/413 (0%)
Sequence:
ATGCCCCACACCGCCCCCACTCCCGGCTCGCTGCGGCCGGTCGTGATCGTCGCCCTGGTCACCGCGCTATGC
CTGGCCGGCGATTCGATGCTTTATATCGCCCTGCCGATCTACTGGCACGAGGTCGGCCTGGAGGCGCTCTGG
CAGGTCGGCGTGCTGCTGTCGATCAACCGCCTGATCCGCCTGCCCTTCAATCCGCTGATCGGCCGCCTGTAC
AAGCACCTGGCACTGAAGACCGGCCTGCTCCTGGCGGTCGTCATCGGCGTGTTGAGCACCGCCGGCTACGGC
CTGGCCAGCGGTTTCCTGGCCTGGGTGCTGCTGCGCGGACTGTGGGGGATCGGCTGGTCGTTCTTCCGCATC
GGCGGGCTCTCGGCGGTGGTCTACTGCGCCGCCGACCACCAGCGCGGCCACGCCATGGGCCTGTACAACGGC
CTCTACCGCCTGGGCAGCCTGGTCGGCATGCTGCTCGGCGGGCTGCTGGTGCCGGTCCTCGGCCTGCCGGCG
CTGGCGCTGTCCTTCGCGATCCTGGCACTGCTCGGCCTGCCGCTGCTGGCGAAGGGTTTCGACCTGCCGGAG
AATCCCGCCGGACAGGCGCGGACCTCCGCCGCAACGGCATCCACCAGCGTCGCCAGGCGCCCGCCGCCGCGC
GGCCTGGTGATCCTCAGCGGCTTCGCCACCGCCCTCCTGATCCAGGGCGTACTCGCCGCCACCCTGAGCGCC
CTGATCGCCCGCAGCTTCGGCACCGAGGTCAGCCTGCTCGGCCTGGCGCTCAGCGCCGCCGGCCTCTCCGGG
ATCATCCAGGCCCTGCGCTGGTCCTGGGAGCCCTGGCTGGCCGGGCGCTTCGGCGCCTGGTCGGATGGCCCG
CGCGGGCGTCGGCGCTTCTACGTGGCTGCGCTACTGGTCGGCGCAATGGGCTTCGGCCTGCTTTCCAGCAGG
CTGCCCATTCTCGCCTGGCTGGCCATCGCCCTGCTGGTGATGCTGGTCGCCACCGCCCTCACCACCCTGACC
GACGCCCTCGCCGCCGACGTCGCCCGCGCCGGCGACGTGGTCGGTTTCATGACCCGCTACTCCATCGTCCAG
GACCTCGGTGCCGCGCTGGGCCCGGCCCTGGCCTTCCTCCTGCTGGAGCGGCCCGGCGGCTTCGCCTGGTTG
TACTGGGGCGGCTCCCTGGCGTTCCTGGTCCTGGCGTTGCTCTGGTTGCGCCGAGCGGACTCTCAGACCGGC
TTGTTGACCATCAGGTAG
Translation:
MPHTAPTPGSLRPVVIVALVTALCLAGDSMLYIALPIYWHEVGLEALWQVGVLLSINRLIRLPFNPLIGRLY
KHLALKTGLLLAVVIGVLSTAGYGLASGFLAWVLLRGLWGIGWSFFRIGGLSAVVYCAADHQRGHAMGLYNG
LYRLGSLVGMLLGGLLVPVLGLPALALSFAILALLGLPLLAKGFDLPENPAGQARTSAATASTSVARRPPPR
GLVILSGFATALLIQGVLAATLSALIARSFGTEVSLLGLALSAAGLSGIIQALRWSWEPWLAGRFGAWSDGP
RGRRRFYVAALLVGAMGFGLLSSRLPILAWLAIALLVMLVATALTTLTDALAADVARAGDVVGFMTRYSIVQ
DLGAALGPALAFLLLERPGGFAWLYWGGSLAFLVLALLWLRRADSQTGLLTIR*
AnnotationID:1482GeneID:1473
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 14:02:42
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:PA0334
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:2949
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20094
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33677
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1473_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1473

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2646 PA0334_tr translation of PA0334 413 98.78 99.03 1 2053.0
83688 gb|AAG03723.1|AE004471_6 (AE004471) probable MFS transporter [Pseudomonas aeruginosa PAO1] 413 98.78 99.03 1 2053.0
83689 dbj|BAB04191.1| (AP001508) BH0472~unknown conserved protein [Bacillus halodurans] 425 45.17 64.23 20 951.0
GC ORFID: 44475How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0334Glimmer Score:
Start: 6192703Stop: 6191462
Length: 1242
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0334 translation of PA0334Homolog Bit Score 794.0
Other Homologs: t_PA0334 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCCACACCGCCCCCACTCCCGGCTCGCTGCGGCCGGTCGTGATCGTCGCCCTGGTCACCGCGCTATGC
CTGGCCGGCGATTCGATGCTTTATATCGCCCTGCCGATCTACTGGCACGAGGTCGGCCTGGAGGCGCTCTGG
CAGGTCGGCGTGCTGCTGTCGATCAACCGCCTGATCCGCCTGCCCTTCAATCCGCTGATCGGCCGCCTGTAC
AAGCACCTGGCACTGAAGACCGGCCTGCTCCTGGCGGTCGTCATCGGCGTGTTGAGCACCGCCGGCTACGGC
CTGGCCAGCGGTTTCCTGGCCTGGGTGCTGCTGCGCGGACTGTGGGGGATCGGCTGGTCGTTCTTCCGCATC
GGCGGGCTCTCGGCGGTGGTCTACTGCGCCGCCGACCACCAGCGCGGCCACGCCATGGGCCTGTACAACGGC
CTCTACCGCCTGGGCAGCCTGGTCGGCATGCTGCTCGGCGGGCTGCTGGTGCCGGTCCTCGGCCTGCCGGCG
CTGGCGCTGTCCTTCGCGATCCTGGCACTGCTCGGCCTGCCGCTGCTGGCGAAGGGTTTCGACCTGCCGGAG
AATCCCGCCGGACAGGCGCGGACCTCCGCCGCAACGGCATCCACCAGCGTCGCCAGGCGCCCGCCGCCGCGC
GGCCTGGTGATCCTCAGCGGCTTCGCCACCGCCCTCCTGATCCAGGGCGTACTCGCCGCCACCCTGAGCGCC
CTGATCGCCCGCAGCTTCGGCACCGAGGTCAGCCTGCTCGGCCTGGCGCTCAGCGCCGCCGGCCTCTCCGGG
ATCATCCAGGCCCTGCGCTGGTCCTGGGAGCCCTGGCTGGCCGGGCGCTTCGGCGCCTGGTCGGATGGCCCG
CGCGGGCGTCGGCGCTTCTACGTGGCTGCGCTACTGGTCGGCGCAATGGGCTTCGGCCTGCTTTCCAGCAGG
CTGCCCATTCTCGCCTGGCTGGCCATCGCCCTGCTGGTGATGCTGGTCGCCACCGCCCTCACCACCCTGACC
GACGCCCTCGCCGCCGACGTCGCCCGCGCCGGCGACGTGGTCGGTTTCATGACCCGCTACTCCATCGTCCAG
GACCTCGGTGCCGCGCTGGGCCCGGCCCTGGCCTTCCTCCTGCTGGAGCGGCCCGGCGGCTTCGCCTGGTTG
TACTGGGGCGGCTCCCTGGCGTTCCTGGTCCTGGCGTTGCTCTGGTTGCGCCGAGCGGACTCTCAGACCGGC
TTGTTGACCATCAGGTAG