ViewGene
Locus Name:
GeneID:
Location:

GeneID:1472
TrivialName: PA14_27310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27310
PAO1 Ortholog Locus:PA2844
Sequence Length:1209
Protein Length:402
Start: 2369146
Stop: 2370354
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06232.1|AE004711_4 (AE004711) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 400/402 (99%), Positives = 401/402 (99%)
Sequence:
ATGAGTCTTTCGCTTTCCCTCGCCGAAGCCCGCCGCCTGGCCCTGGCCGCGCAGGGCTTCGACGGCCGGCGG
ACGCGCCGCAGCGTGCAGCGGCGGCATCTGCGCGAAATGCTCGCGCGCCTCGGCCTGCTACAGATCGATTCG
GTGAATGCGCTGGTGCGCTCGCACTACCTGCCGCTGTTTTCCCGCCTCGGTCCCTACTCCATGACGCTGCTC
GACGAGGCAGCCTGGAGTGTCGGCCGTCACCGCCAGTTGTTCGAATACTGGGGGCACGAGGCCTCGCTGCTG
CCGCTGGAGCACTACCCGCTGATGCGCTGGCGGATGCGCCAGGCCGCCGACGGCCAGGGCATCTACCAGCAA
CTGGCACGTTTCGGCCGGGAACAGCAGCCACTGATCCGCCAGGTGTTGCAGGCGGTGCGCGAGCAAGGCGCG
CTGGGTGCCGGCAGCCTGAGCACGCGGCAGGAGCGGGCCGGTCCCTGGTGGGACTGGAGCGCGGAAAAGCAT
GCGCTGGAATGGCTGTTCGCCGCCGGTGAGCTGACGGTGGCCGGACGGCGCGGTTTCGAGCGGCTCTATGAT
CTGCCGGAGCGAGTGTTTCCCGCGGAATTGCTGGCGCGTCCCGAGCTTTCGGAGGCACAGGCCCAGCGCGAG
CTGTTGCGGATGGCGGCGAGCGCCCTGGGCGTGGCCACCGAAAAGGACCTGCGCGACTACTATCGGCTGAGC
CCGGCGCAGAGCCGCGCGCGCCTCGCCGAACTGGTGGAGGCTGGCGAGCTGCTGCCGGTCCGGGTCGAGGGC
TGGAGCCAGCCGGCCTACTGCCCCGGCGAACCGCAGGTGCCGAGGCGGCTAGGCGCCAGTGCCTTGCTCTCG
CCCTTCGACTCGTTGGTCTGGGAGCGGGCGCGGGCCGAGCGCCTGTTCGATTTCCGCTATCGTCTGGAGATC
TACACGCCGAAGGAAAAACGCGTGTACGGCTACTACGTGCTGCCATTCCTGTACAACGGCCGTCTGGTCGGC
CGCGTCGACCTCCGCGCCGAGCGGGCGCGGGAGCGCCTGGCGGTGCATGCGCTGCATGCCGAGGCGAACGGC
ATGGACGATGCCGCCCTGCACGATCTGGCCGAGCAGTTGCGCAGCATGGCCGCCTGGCTGGGCCTGGCGACG
GTGGCGATCGAGGGGCGCGGGGAGTTGGCGGTGCGCTTGCGCGGGGTGCTGCTCTAG
Translation:
MSLSLSLAEARRLALAAQGFDGRRTRRSVQRRHLREMLARLGLLQIDSVNALVRSHYLPLFSRLGPYSMTLL
DEAAWSVGRHRQLFEYWGHEASLLPLEHYPLMRWRMRQAADGQGIYQQLARFGREQQPLIRQVLQAVREQGA
LGAGSLSTRQERAGPWWDWSAEKHALEWLFAAGELTVAGRRGFERLYDLPERVFPAELLARPELSEAQAQRE
LLRMAASALGVATEKDLRDYYRLSPAQSRARLAELVEAGELLPVRVEGWSQPAYCPGEPQVPRRLGASALLS
PFDSLVWERARAERLFDFRYRLEIYTPKEKRVYGYYVLPFLYNGRLVGRVDLRAERARERLAVHALHAEANG
MDDAALHDLAEQLRSMAAWLGLATVAIEGRGELAVRLRGVLL*
AnnotationID:1481GeneID:1472
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 19:07:29
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2844
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2947




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20092




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36190




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1472_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1472
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2645
                           PA2844_tr
                           translation of PA2844
                           402
                           99.50
                           99.75
                           0
                           2050.0
     

     
     
83682
                           gb|AAG06232.1|AE004711_4
                           (AE004711) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           402
                           99.50
                           99.75
                           0
                           2050.0
     

     
     
83683
                           dbj|BAB48760.1|
                           (AP002997) hypothetical protein [Mesorhizobium loti]
                           403
                           54.34
                           68.73
                           5
                           1093.0
     

     
     
83684
                           gb|AAK25286.1|
                           (AE005994) conserved hypothetical protein [Caulobacter crescentus CB15]
                           413
                           50.60
                           62.22
                           15
                           966.0
     

     
     
83687
                           gb|AAN79525.1|AE016758_129
                           (AE016758) Hypothetical protein ycaQ [Escherichia coli CFT073]
                           424
                           37.50
                           53.06
                           36
                           589.0
     

     






      

          
GC ORFID: 44474How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2844Glimmer Score: 

          
Start: 2584781Stop: 2583573

          
Length: 1209


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2844 translation of PA2844Homolog Bit Score 794.0

          
Other Homologs:  t_PA2844 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTCTTTCGCTTTCCCTCGCCGAAGCCCGCCGCCTGGCCCTGGCCGCGCAGGGCTTCGACGGCCGGCGG 
ACGCGCCGCAGCGTGCAGCGGCGGCATCTGCGCGAAATGCTCGCGCGCCTCGGCCTGCTACAGATCGATTCG 
GTGAATGCGCTGGTGCGCTCGCACTACCTGCCGCTGTTTTCCCGCCTCGGTCCCTACTCCATGACGCTGCTC 
GACGAGGCAGCCTGGAGTGTCGGCCGTCACCGCCAGTTGTTCGAATACTGGGGGCACGAGGCCTCGCTGCTG 
CCGCTGGAGCACTACCCGCTGATGCGCTGGCGGATGCGCCAGGCCGCCGACGGCCAGGGCATCTACCAGCAA 
CTGGCACGTTTCGGCCGGGAACAGCAGCCACTGATCCGCCAGGTGTTGCAGGCGGTGCGCGAGCAAGGCGCG 
CTGGGTGCCGGCAGCCTGAGCACGCGGCAGGAGCGGGCCGGTCCCTGGTGGGACTGGAGCGCGGAAAAGCAT 
GCGCTGGAATGGCTGTTCGCCGCCGGTGAGCTGACGGTGGCCGGACGGCGCGGTTTCGAGCGGCTCTATGAT 
CTGCCGGAGCGAGTGTTTCCCGCGGAATTGCTGGCGCGTCCCGAGCTTTCGGAGGCACAGGCCCAGCGCGAG 
CTGTTGCGGATGGCGGCGAGCGCCCTGGGCGTGGCCACCGAAAAGGACCTGCGCGACTACTATCGGCTGAGC 
CCGGCGCAGAGCCGCGCGCGCCTCGCCGAACTGGTGGAGGCTGGCGAGCTGCTGCCGGTCCGGGTCGAGGGC 
TGGAGCCAGCCGGCCTACTGCCCCGGCGAACCGCAGGTGCCGAGGCGGCTAGGCGCCAGTGCCTTGCTCTCG 
CCCTTCGACTCGTTGGTCTGGGAGCGGGCGCGGGCCGAGCGCCTGTTCGATTTCCGCTATCGTCTGGAGATC 
TACACGCCGAAGGAAAAACGCGTGTACGGCTACTACGTGCTGCCATTCCTGTACAACGGCCGTCTGGTCGGC 
CGCGTCGACCTCCGCGCCGAGCGGGCGCGGGAGCGCCTGGCGGTGCATGCGCTGCATGCCGAGGCGAACGGC 
ATGGACGATGCCGCCCTGCACGATCTGGCCGAGCAGTTGCGCAGCATGGCCGCCTGGCTGGGCCTGGCGACG 
GTGGCGATCGAGGGGCGCGGGGAGTTGGCGGTGCGCTTGCGCGGGGTGCTGCTCTAG