ViewGene

Locus Name:
GeneID:
Location:

GeneID:1470
TrivialName: PA14_10820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10820
PAO1 Ortholog Locus:PA4108
Sequence Length:1245
Protein Length:414
Start: 936666
Stop: 935422
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07495.1|AE004827_4 (AE004827) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 396/414 (95%), Positives = 402/414 (97%)
Sequence:
GTGCTGAAACGCATTCCGGTAACCCAGCTTCGCCTCGGTATGTTCGTCCAGAGCCTTTGCGGCTCGTGGCTG
GACCACCCGTTCTGGAAAAGAGGCGGCTTCCTGCTCGACAACCAGTCCGACCTGCAGCGCCTGCGCGAAAGC
GCCGTGAAGGAGGTCTGGATCGACGCCGGCAAGGGCCTCGACCTCCCGGAGGAAGCGGCGGTCTCGGCCGCT
GCGGTCCTGCCGGTCACCATGCCGGCCGACCCTTCGCCGGCGCGGGTCGCCCTGGAGGAGGAAATCCGCCAC
GCCGCCCTGCTCTGCGGCCGCGCCAAGGCCGCCGTGGTCAGCATGTTCCACGACGCGCGCATGGGCCAGGCC
ATCGACACCGCGCATGCATCGGACCTGGTGGACGAAATCTCCGCCTCGGTGCTGCGCCATCCCAACGCGCTG
GTCAGCCTGGTACGGCTGAAGACCTCGGATGAATACACCTACATGCATTCGGTGGCGGTCTGCGCGCTGATG
ATCGCCCTCGCCCGCCAGCTCGAACTGTCCGACCCGCTGGTACACGAGGCGGGGTTGGCGGGACTGCTGCAC
GACATCGGCAAGATGGCGGTACCCGATCCGATCCTGAACAAGCCCGGCAAGCTCACCGAGCAGGAATTCGGC
CTGGTCCGCCGGCATCCGCAGAACGGTGCGCGGATGCTGCTCGATTGCCGCCAGGTCAGCGCCCTGGTGGTG
GATGTCTGCCTGCACCATCACGAGCGCATCGACGGCACCGGCTACCCCTTCGGCCTGGCGCAGGAGCAGATC
AGCCTGCTGGCGCGGATGGGCACGGTGTGCGACGTCTACGACGCGATCACCTCCGACCGTCCCTACAAGAAG
GGCTGGAACGCCGCCGAGGCGATCCGGCGCATGGCCGAATGGAACGGGCACTTCGACCCGCAGGTGTTCCGC
GCCTTCGTCAAGGCAGTGGGCATCTACCCGGTCGGCGCGCTGGTCAGGCTGGAAAGCGGGCGCCTCGGCGTG
GTCCTCGAGCAACACGGCCGCTCGCTGCTGACGCCACGGGTCAAGGTATTCTTCTCGGCCCGCTCGAAGGTG
CCGATCCCGCAGCAGGTGATAGACCTGGGTAGGGCCGGACAGACCGACCGAATCGTCGGCTTCGAGCCGGCG
GAGGCCTGGAACTTCCGCAATCTCGACGAGATGTGGACGGGACTGCCGAGCAACGGCGGGTCGTATTTCGAC
GCGGGAACCGGAAAGCCGTAG
Translation:
MLKRIPVTQLRLGMFVQSLCGSWLDHPFWKRGGFLLDNQSDLQRLRESAVKEVWIDAGKGLDLPEEAAVSAA
AVLPVTMPADPSPARVALEEEIRHAALLCGRAKAAVVSMFHDARMGQAIDTAHASDLVDEISASVLRHPNAL
VSLVRLKTSDEYTYMHSVAVCALMIALARQLELSDPLVHEAGLAGLLHDIGKMAVPDPILNKPGKLTEQEFG
LVRRHPQNGARMLLDCRQVSALVVDVCLHHHERIDGTGYPFGLAQEQISLLARMGTVCDVYDAITSDRPYKK
GWNAAEAIRRMAEWNGHFDPQVFRAFVKAVGIYPVGALVRLESGRLGVVLEQHGRSLLTPRVKVFFSARSKV
PIPQQVIDLGRAGQTDRIVGFEPAEAWNFRNLDEMWTGLPSNGGSYFDAGTGKP*
AnnotationID:1479GeneID:1470
AnnotatorUID: diggins
Modification Date/Time: 2005-06-08 06:06:11
Gene Name:
Confidence Code:3
GeneProduct:putative HDIG domain protein
Cell Localization:()
Synonyms:PA4108
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2206
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54681.1| (AE016859) HDIG domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 395

 Score =  444 bits (1142), Expect = e-124
 Identities = 223/404 (55%), Positives = 288/404 (71%), Gaps = 12/404 (2%)
Structural Features:
COG2206, HD-GYP domain [Signal transduction mechanisms]
CD-Length = 344 residues,  99.1% aligned
Score =  303 bits (776), Expect = 3e-83
Identities = 144/341 (42%), Positives = 193/341 (56%), Gaps = 23/341 (6%)
Genomic Context:
Comment:
ReferenceID:14357
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20088
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:38082
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1470_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1470

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2642 PA4108_tr translation of PA4108 414 95.65 97.10 0 2054.0
83066 gb|AAG07495.1|AE004827_4 (AE004827) hypothetical protein PA4108 [Pseudomonas aeruginosa PAO1] 414 95.41 97.10 0 2051.0
83067 gb|AAO54681.1| (AE016859) HDIG domain protein [Pseudomonas syringae pv. tomato str. DC3000] 417 53.23 69.06 25 1150.0
83068 emb|CAD16222.1| (AL646070) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum] 421 52.73 65.79 26 1083.0
83069 gb|AAM39669.1| (AE012131) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] 435 47.35 64.82 43 1027.0
GC ORFID: 44472How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4108Glimmer Score:
Start: 4017271Stop: 4018515
Length: 1245
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA4108 translation of PA4108Homolog Bit Score 795.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene5056 (ORF: BLASTX 438.0), t_PA4108 (ORF: GLIMMER)
GC ORF Sequence
GTGCTGAAACGCATTCCGGTAACCCAGCTTCGCCTCGGTATGTTCGTCCAGAGCCTTTGCGGCTCGTGGCTG
GACCACCCGTTCTGGAAAAGAGGCGGCTTCCTGCTCGACAACCAGTCCGACCTGCAGCGCCTGCGCGAAAGC
GCCGTGAAGGAGGTCTGGATCGACGCCGGCAAGGGCCTCGACCTCCCGGAGGAAGCGGCGGTCTCGGCCGCT
GCGGTCCTGCCGGTCACCATGCCGGCCGACCCTTCGCCGGCGCGGGTCGCCCTGGAGGAGGAAATCCGCCAC
GCCGCCCTGCTCTGCGGCCGCGCCAAGGCCGCCGTGGTCAGCATGTTCCACGACGCGCGCATGGGCCAGGCC
ATCGACACCGCGCATGCATCGGACCTGGTGGACGAAATCTCCGCCTCGGTGCTGCGCCATCCCAACGCGCTG
GTCAGCCTGGTACGGCTGAAGACCTCGGATGAATACACCTACATGCATTCGGTGGCGGTCTGCGCGCTGATG
ATCGCCCTCGCCCGCCAGCTCGAACTGTCCGACCCGCTGGTACACGAGGCGGGGTTGGCGGGACTGCTGCAC
GACATCGGCAAGATGGCGGTACCCGATCCGATCCTGAACAAGCCCGGCAAGCTCACCGAGCAGGAATTCGGC
CTGGTCCGCCGGCATCCGCAGAACGGTGCGCGGATGCTGCTCGATTGCCGCCAGGTCAGCGCCCTGGTGGTG
GATGTCTGCCTGCACCATCACGAGCGCATCGACGGCACCGGCTACCCCTTCGGCCTGGCGCAGGAGCAGATC
AGCCTGCTGGCGCGGATGGGCACGGTGTGCGACGTCTACGACGCGATCACCTCCGACCGTCCCTACAAGAAG
GGCTGGAACGCCGCCGAGGCGATCCGGCGCATGGCCGAATGGAACGGGCACTTCGACCCGCAGGTGTTCCGC
GCCTTCGTCAAGGCAGTGGGCATCTACCCGGTCGGCGCGCTGGTCAGGCTGGAAAGCGGGCGCCTCGGCGTG
GTCCTCGAGCAACACGGCCGCTCGCTGCTGACGCCACGGGTCAAGGTATTCTTCTCGGCCCGCTCGAAGGTG
CCGATCCCGCAGCAGGTGATAGACCTGGGTAGGGCCGGACAGACCGACCGAATCGTCGGCTTCGAGCCGGCG
GAGGCCTGGAACTTCCGCAATCTCGACGAGATGTGGACGGGACTGCCGAGCAACGGCGGGTCGTATTTCGAC
GCGGGAACCGGAAAGCCGTAG