ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1469

TrivialName: PA14_30810

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_30810

PAO1 Ortholog Locus: PA2574

Sequence Length: 1149

Protein Length: 382

Start: 2671834

Stop: 2672982

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05962.1|AE004685_8 (AE004685) alkane-1-monooxygenase [Pseudomonas aeruginosa PAO1] Identities = 380/382 (99%), Positives = 381/382 (99%)

Sequence:

ATGTTTGAAAATTTCTCTCCCACCACCATGCTGGCCATCAAGAAGTACGCCTATTGGCTCTGGCTGCTGCTG
GCGTTGTCCATGCCGTTCAACTACTGGATGGCCCAGGACAGCGCGCATCCGGCCTTCTGGGCATTTTCCCTG
GTGATTGCGGTATTCGGCATCGGGCCATTGCTGGACATGCTGTTCGGTCGTGACCCGGCCAACCCAGACGAG
GAAACCCAGACGCCGCAGTTGCTCGGCCAGGGCTACTACGTATTGCTGACCCTGGCCACGGTGCCGGTGCTC
ATCGGCACGCTGGTCTGGGCCGCTGGCGTGTTCGTCGCTTTCCAGGAATGGGGCTGGCTCGGCCGGTTGGGC
TGGATCCTCTCGATGGGCACGGTGATGGGAGCGGTGGGGATCGTCGTCGCCCATGAGCTGATCCACAAGGAC
TCGGCGTTGGAGCAGGCTGCCGGTGGCATCCTGCTGGCCGCCGTGTGCTACGCGGGGTTCAAGGTCGAGCAT
GTGCGCGGCCACCATGTGCATGTGTCCACCCCGGAGGACGCTTCGTCGGCGCGTTTCGGCCAGTCGGTCTAC
CAGTTCCTGCCGCATGCCTACAAGTACAACTTCCTCAACGCCTGGCGCCTCGAAGCGGTGCGGCTGCGCAAG
AAGGGCCTGCCGGTGTTCGGCTGGCAGAACGAACTGATCTGGTGGTACCTGCTGAGCCTGGCGTTGCTGGTC
GGTTTCGGTTGGGCGTTCGGCTGGCTGGGGATGGTTTTCTTCCTTGGCCAGGCGTTCGTCGCGGTGACCCTG
CTGGAAATCATCAACTACGTCGAGCACTACGGCCTGCATCGGCGGAAGGGCGAGGACGGGCGCTACGAGCGG
ACCAACCATACCCACTCCTGGAACAGCAACTTCGTCTTCACCAACCTGGTCCTGTTCCATCTGCAACGGCAT
TCCGACCATCATGCCTTCGCCAAACGCCCCTACCAGGCCCTCCGCCATTATGACGATAGCCCGCAGATGCCC
AGCGGTTACGCCGGGATGGTGGTGCTGGCGCTGATCCCGCCGCTGTGGCGGGCGGTCATGGATCCCAAGGTA
CGGGCCTACTATGCGGGCGAAGAGTTCCAGTTGACGGCCGAACAGAGCGAGCGGCCGGCGGCCTCCTGA

Translation:

MFENFSPTTMLAIKKYAYWLWLLLALSMPFNYWMAQDSAHPAFWAFSLVIAVFGIGPLLDMLFGRDPANPDE
ETQTPQLLGQGYYVLLTLATVPVLIGTLVWAAGVFVAFQEWGWLGRLGWILSMGTVMGAVGIVVAHELIHKD
SALEQAAGGILLAAVCYAGFKVEHVRGHHVHVSTPEDASSARFGQSVYQFLPHAYKYNFLNAWRLEAVRLRK
KGLPVFGWQNELIWWYLLSLALLVGFGWAFGWLGMVFFLGQAFVAVTLLEIINYVEHYGLHRRKGEDGRYER
TNHTHSWNSNFVFTNLVLFHLQRHSDHHAFAKRPYQALRHYDDSPQMPSGYAGMVVLALIPPLWRAVMDPKV
RAYYAGEEFQLTAEQSERPAAS*

AnnotationID:1478 GeneID:1469

AnnotatorUID: diggins

Modification Date/Time: 2005-04-29 10:10:00

Gene Name: alkB1

Confidence Code: 1

GeneProduct: alkane-1-monooxygenase

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (5) Carbon compound catabolism

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: 1.14.15.3

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>emb|CAE17295.1| (AJ577851) alkane 1-monooxygenase [Alcanivorax borkumensis]
          Length = 382

 Score =  423 bits (1088), Expect = e-118
 Identities = 203/372 (54%), Positives = 261/372 (70%), Gaps = 2/372 (0%)

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:2941

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20086

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33147

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1469_cdd.html

URL:

ReferenceID:34532

Author/Investigator(s): Aravind L, Koonin EV.

Title: The DNA-repair protein AlkB, EGL-9, and leprecan define new families of 2-oxoglutarate- and iron-dependent dioxygenases.

PubMed: 11276424

MedLine:

Source:

Genome Biol. 2001;2(3):RESEARCH0007. Epub 2001 Feb 19.

Reference Type: Journal

Data:

URL:	`http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=11276424`

Homologs By Global Alignment

Gene ID:1469

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2640 PA2574_tr translation of PA2574 382 99.47 99.73 0 2052.0

83020 gb|AAG05962.1|AE004685_8 (AE004685) alkane-1-monooxygenase [Pseudomonas aeruginosa PAO1] 382 99.47 99.73 0 2052.0

83025 emb|CAC86945.1| (AJ344080) putative alkane-1-monooxygenase [Pseudomonas aeruginosa] 382 67.01 67.01 126 1376.0

83024 emb|CAC86948.1| (AJ344084) putative alkane-1-monooxygenase [Pseudomonas aeruginosa] 382 67.01 67.01 126 1376.0

83023 emb|CAC86950.1| (AJ344086) putative alkane-1-monooxygenase [Pseudomonas aeruginosa] 382 67.01 67.01 126 1376.0

GC ORFID: `44471`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2574`	Glimmer Score:
Start: `2282092`	Stop: `2280944`
Length: `1149`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2574 translation of PA2574`	Homolog Bit Score `795.0`
Other Homologs: `t_PA1525 (ORF: BLASTX 563.0), t_PA2574 (ORF: GLIMMER)`
GC ORF Sequence
ATGTTTGAAAATTTCTCTCCCACCACCATGCTGGCCATCAAGAAGTACGCCTATTGGCTCTGGCTGCTGCTG GCGTTGTCCATGCCGTTCAACTACTGGATGGCCCAGGACAGCGCGCATCCGGCCTTCTGGGCATTTTCCCTG GTGATTGCGGTATTCGGCATCGGGCCATTGCTGGACATGCTGTTCGGTCGTGACCCGGCCAACCCAGACGAG GAAACCCAGACGCCGCAGTTGCTCGGCCAGGGCTACTACGTATTGCTGACCCTGGCCACGGTGCCGGTGCTC ATCGGCACGCTGGTCTGGGCCGCTGGCGTGTTCGTCGCTTTCCAGGAATGGGGCTGGCTCGGCCGGTTGGGC TGGATCCTCTCGATGGGCACGGTGATGGGAGCGGTGGGGATCGTCGTCGCCCATGAGCTGATCCACAAGGAC TCGGCGTTGGAGCAGGCTGCCGGTGGCATCCTGCTGGCCGCCGTGTGCTACGCGGGGTTCAAGGTCGAGCAT GTGCGCGGCCACCATGTGCATGTGTCCACCCCGGAGGACGCTTCGTCGGCGCGTTTCGGCCAGTCGGTCTAC CAGTTCCTGCCGCATGCCTACAAGTACAACTTCCTCAACGCCTGGCGCCTCGAAGCGGTGCGGCTGCGCAAG AAGGGCCTGCCGGTGTTCGGCTGGCAGAACGAACTGATCTGGTGGTACCTGCTGAGCCTGGCGTTGCTGGTC GGTTTCGGTTGGGCGTTCGGCTGGCTGGGGATGGTTTTCTTCCTTGGCCAGGCGTTCGTCGCGGTGACCCTG CTGGAAATCATCAACTACGTCGAGCACTACGGCCTGCATCGGCGGAAGGGCGAGGACGGGCGCTACGAGCGG ACCAACCATACCCACTCCTGGAACAGCAACTTCGTCTTCACCAACCTGGTCCTGTTCCATCTGCAACGGCAT TCCGACCATCATGCCTTCGCCAAACGCCCCTACCAGGCCCTCCGCCATTATGACGATAGCCCGCAGATGCCC AGCGGTTACGCCGGGATGGTGGTGCTGGCGCTGATCCCGCCGCTGTGGCGGGCGGTCATGGATCCCAAGGTA CGGGCCTACTATGCGGGCGAAGAGTTCCAGTTGACGGCCGAACAGAGCGAGCGGCCGGCGGCCTCCTGA