ViewGene
Locus Name:
GeneID:
Location:

GeneID:1466
TrivialName: PA14_29030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29030
PAO1 Ortholog Locus:PA2716
Sequence Length:1236
Protein Length:411
Start: 2510015
Stop: 2511250
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06104.1|AE004699_9 (AE004699) probable FMN oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 407/411 (99%), Positives = 408/411 (99%)
Sequence:
ATGAACCTGTTCGACACGCTGACGCTTCCCAACGGCTCGACCATTCCCAATCGCCTCGCCAAGGCCGCCATG
GAGGAGAACATGACCGATGCCGCGCAGGCCCCCTCCGAACGCCTGATGCGCCTCTACCAGGCCTGGGCCGAC
GGCGGCGCCGGGCTGCTGATCAGCGGTAACGTGATGGTCGACAGCCGTGCCATGACCGGCCCCGGCGGGGTG
GTCCTGGAAGACGACGCGCAACTGGAGAAGTTCCGCCACTGGGCGCGCATCGGGCGTTCCGCCGGCGCGCAG
TTCTGGTTGCAGATCAACCATCCCGGCCGGCAGATGCAGGCCAATCTCGGCCAGCAGGCCTGGGCGCCCTCG
GCGGTGCCGCTGGAACTGGGCGGGATGTCCAGGCACTTCGCTACGCCGAAGGCGATGGACGAGGCGATGATC
GCCGAGGTGATCCAGCGGTTCGCCCGCAGCGCCGTCCTGGCCGAGCGGGCCGGCTTCAGCGGGGTGGAGATC
CATGCCGCCCACGGTTACCTGCTCAGCCAGTTCCTCTCGCCGCTGAGCAACCGCCGCAGCGACGCCTGGGGC
GGCTCCCTGGAGAATCGCGCGCGCCTGCTGCTGGAGATCGTCCGGGCGGTGCGCGCCGAGGTTGCCCCTGGC
TTCGCGGTGGCGGTGAAGCTGAATTCCGCCGATTTCCAGCGCGGCGGCTTCAGCGCCGACGATGCCCGCGAG
GTGGTACGGATGCTCGATGGCCTGGGCATCGACCTGGTCGAGCTGTCGGGCGGCAGCTACGAGGCGCCGGCC
ATGCAGGGCGAAGCGCGCGACGGGCGGACCCTGGCCCGCGAGGCCTACTTCGTCGAGTTCGCCCGCGACATC
CGCGCGGCGGCGCGGATGCCGGTAATGGTCACGGGCGGCATCCGCCGGCGGCCGGTGGCCGAGCAGGTGCTG
GCCAGCGGGGTGGACATGGTCGGCATCGGCACGGCGCTGGCGATCGAGCCGAACCTGCCGCGCGACTGGCGC
GCCGGCAAGGACTCGGCGCCGCAGTTGCGGCCGATAACTTGGAGGAACAAACCCCTGGCCTCGCTGGCGAAC
ATGGCCGCGGTGAAGTTCCAGTTGCGCAAGCTGAGCCGGGGCAGGGCGACCAACCCACGGGTGTCGCCGCTG
TGCGCGTTGCTCGCGCAGCAGGCCGGCGCGCTCCTGCAGACCCGCCGTTACCGGCGGCTCATGCGTTCGCGC
GCCGAAGCCTGA
Translation:
MNLFDTLTLPNGSTIPNRLAKAAMEENMTDAAQAPSERLMRLYQAWADGGAGLLISGNVMVDSRAMTGPGGV
VLEDDAQLEKFRHWARIGRSAGAQFWLQINHPGRQMQANLGQQAWAPSAVPLELGGMSRHFATPKAMDEAMI
AEVIQRFARSAVLAERAGFSGVEIHAAHGYLLSQFLSPLSNRRSDAWGGSLENRARLLLEIVRAVRAEVAPG
FAVAVKLNSADFQRGGFSADDAREVVRMLDGLGIDLVELSGGSYEAPAMQGEARDGRTLAREAYFVEFARDI
RAAARMPVMVTGGIRRRPVAEQVLASGVDMVGIGTALAIEPNLPRDWRAGKDSAPQLRPITWRNKPLASLAN
MAAVKFQLRKLSRGRATNPRVSPLCALLAQQAGALLQTRRYRRLMRSRAEA*
AnnotationID:1475GeneID:1466
AnnotatorUID: diggins
Modification Date/Time: 2004-12-08 17:05:09
Gene Name:
Confidence Code:3
GeneProduct:putative FMN oxidoreductase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1902,pfam00724
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68602.1|AE016491_5 (AE016785) oxidoreductase, FMN-binding [Pseudomonas putida KT2440]
          Length = 418

 Score =  624 bits (1609), Expect = e-178
 Identities = 310/409 (75%), Positives = 353/409 (86%)

>emb|CAD17287.1| (AL646076) PUTATIVE NADH OXIDASE-RELATED OXIDOREDUCTASE PROTEIN
           [Ralstonia solanacearum]
          Length = 411

 Score =  595 bits (1533), Expect = e-169
 Identities = 299/409 (73%), Positives = 341/409 (83%)

>gb|AAL54260.1| (AE009734) NADH OXIDASE [Brucella melitensis 16M]
          Length = 424

 Score =  547 bits (1409), Expect = e-155
 Identities = 277/408 (67%), Positives = 323/408 (79%)








 
Structural Features:
COG1902, NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family 
[Energy production and conversion]

pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / NADH oxidase family.






   
Genomic Context:






   
Comment:


















    ReferenceID:2935




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20080




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36315




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1466_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1466
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2635
                           PA2716_tr
                           translation of PA2716
                           411
                           99.02
                           99.27
                           0
                           2056.0
     

     
     
82320
                           gb|AAG06104.1|AE004699_9
                           (AE004699) probable FMN oxidoreductase [Pseudomonas aeruginosa PAO1]
                           411
                           99.02
                           99.27
                           0
                           2056.0
     

     
     
82321
                           gb|AAN68602.1|AE016491_5
                           (AE016785) oxidoreductase, FMN-binding [Pseudomonas putida KT2440]
                           418
                           74.16
                           84.44
                           7
                           1607.0
     

     
     
82322
                           emb|CAD17287.1|
                           (AL646076) PUTATIVE NADH OXIDASE-RELATED OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
                           411
                           72.74
                           82.96
                           0
                           1531.0
     

     
     
82323
                           gb|AAL54260.1|
                           (AE009734) NADH OXIDASE [Brucella melitensis 16M]
                           424
                           65.33
                           76.17
                           13
                           1407.0
     

     






      

          
GC ORFID: 44468How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2716Glimmer Score: 

          
Start: 2443911Stop: 2442676

          
Length: 1236


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2716 translation of PA2716Homolog Bit Score 796.0

          
Other Homologs:  t_PA2716 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCTGTTCGACACGCTGACGCTTCCCAACGGCTCGACCATTCCCAATCGCCTCGCCAAGGCCGCCATG 
GAGGAGAACATGACCGATGCCGCGCAGGCCCCCTCCGAACGCCTGATGCGCCTCTACCAGGCCTGGGCCGAC 
GGCGGCGCCGGGCTGCTGATCAGCGGTAACGTGATGGTCGACAGCCGTGCCATGACCGGCCCCGGCGGGGTG 
GTCCTGGAAGACGACGCGCAACTGGAGAAGTTCCGCCACTGGGCGCGCATCGGGCGTTCCGCCGGCGCGCAG 
TTCTGGTTGCAGATCAACCATCCCGGCCGGCAGATGCAGGCCAATCTCGGCCAGCAGGCCTGGGCGCCCTCG 
GCGGTGCCGCTGGAACTGGGCGGGATGTCCAGGCACTTCGCTACGCCGAAGGCGATGGACGAGGCGATGATC 
GCCGAGGTGATCCAGCGGTTCGCCCGCAGCGCCGTCCTGGCCGAGCGGGCCGGCTTCAGCGGGGTGGAGATC 
CATGCCGCCCACGGTTACCTGCTCAGCCAGTTCCTCTCGCCGCTGAGCAACCGCCGCAGCGACGCCTGGGGC 
GGCTCCCTGGAGAATCGCGCGCGCCTGCTGCTGGAGATCGTCCGGGCGGTGCGCGCCGAGGTTGCCCCTGGC 
TTCGCGGTGGCGGTGAAGCTGAATTCCGCCGATTTCCAGCGCGGCGGCTTCAGCGCCGACGATGCCCGCGAG 
GTGGTACGGATGCTCGATGGCCTGGGCATCGACCTGGTCGAGCTGTCGGGCGGCAGCTACGAGGCGCCGGCC 
ATGCAGGGCGAAGCGCGCGACGGGCGGACCCTGGCCCGCGAGGCCTACTTCGTCGAGTTCGCCCGCGACATC 
CGCGCGGCGGCGCGGATGCCGGTAATGGTCACGGGCGGCATCCGCCGGCGGCCGGTGGCCGAGCAGGTGCTG 
GCCAGCGGGGTGGACATGGTCGGCATCGGCACGGCGCTGGCGATCGAGCCGAACCTGCCGCGCGACTGGCGC 
GCCGGCAAGGACTCGGCGCCGCAGTTGCGGCCGATAACTTGGAGGAACAAACCCCTGGCCTCGCTGGCGAAC 
ATGGCCGCGGTGAAGTTCCAGTTGCGCAAGCTGAGCCGGGGCAGGGCGACCAACCCACGGGTGTCGCCGCTG 
TGCGCGTTGCTCGCGCAGCAGGCCGGCGCGCTCCTGCAGACCCGCCGTTACCGGCGGCTCATGCGTTCGCGC 
GCCGAAGCCTGA