ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1465

TrivialName: PA14_30600

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_30600

PAO1 Ortholog Locus: PA2589

Sequence Length: 1215

Protein Length: 404

Start: 2651138

Stop: 2652352

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05977.1|AE004687_6 (AE004687) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 400/404 (99%), Positives = 401/404 (99%)

Sequence:

GTGGCGCAACGAGAATTTTCCGCGACCAGCGGCGGCGTGCTGCTGGCGTCGGTGGTGGCGATCATGCTCGGG
CCCACCGGCATCCTGCTGAACACCTTCAGTCTGTTCATCGCACCGATGAGCGCCGAGTACGCCTGGGACCGC
GCCGAGGTGTCGTTGCTGGTGACGCTGTTcggaCTGGCGGTCGCCATCACcAGCccgttcaAgggctGGCTG
AtcaacCGTTGGGGCGCGCGGCGGACAATGCtCGGGCTGACCGCGGCCCTGTCGCTGCCGCTGCTCGGCCTG
GCGGCGGTGAATGCCGTCTGGCAACTCTACGCGCTGTTCCTGCTGATCGGCCTGCTGGCGCCAGGCAACCTG
CCTTACGGACGTATCCTCGGACTCTGGTTCCGCCACCGCCTGGGCGTGGCCTACGGCCTGCTCGGCCTGGGC
TTCGGGGTGGGCGGGCCGCTGGGCCTGCTGGTCGGCCACCAGAGCCTCGAAGCGTGGGGCTGGCGCGGCGCT
TTCCTGGTCTACGGCGTGCTCGAACTGGGCCTGGCGCTGCCGCTGCTGGCCTGGCTGTTCCGCGAGCCAGCG
CCGGGCGCTGGCGTGGCCGCCGGCACGGCCGTAGCGGAAACCGCGCTGAGCGGATCGACGGCGCCCCAGGCC
TGGCGCAGCGCCAGTTTCTGGCTGGTGCTGGGCAACCAGGTACTGGCGGTGTTCGTAATGTCCGGGATCATG
ACCCATGGCGTGCCGATGCTGGTGGAGCGCGGTTTGTCCCGGGGCGAGGCGGGCACCGCGCTGTCGGCGTTG
TGGGTCGGCATGATGCTGTCGCAGCCGCTGATGGGCTGGCTTCTCGACCGCGTGGCGACGCCGCGGGTGGCG
TTGCCCTTCGCCCTGGCGGCGGTGCTCGGCATGGCCTGGTTCCTGGTGGGCGACACACCGAGCGGTCTATGG
CTGGCGGTGTTCCTGGTCGGCCTGGGCGGAGGAGGGGAAAGCGGCACCACCAAGTACCTGTTGATGCGCTAC
TTCGGCCTGCGCAGCTTCGGTGTGATCTACGGTTCGATCCAGCCGTTCACCTTCGCCCTGTCGATCAGTCTC
GGCGCTTACCTGCTGGGCTGGCTGTACGACCGCGCCGAAGGCTACGGGACGGCCGAATGGGTGCTGCTCGCG
GCTTTTTCCCTGGCTGCGTGCAGCCTGTTCGCCTTTCGCCCCTATCCGCAGAAATTGCCCTGA

Translation:

MAQREFSATSGGVLLASVVAIMLGPTGILLNTFSLFIAPMSAEYAWDRAEVSLLVTLFGLAVAITSPFKGWL
INRWGARRTMLGLTAALSLPLLGLAAVNAVWQLYALFLLIGLLAPGNLPYGRILGLWFRHRLGVAYGLLGLG
FGVGGPLGLLVGHQSLEAWGWRGAFLVYGVLELGLALPLLAWLFREPAPGAGVAAGTAVAETALSGSTAPQA
WRSASFWLVLGNQVLAVFVMSGIMTHGVPMLVERGLSRGEAGTALSALWVGMMLSQPLMGWLLDRVATPRVA
LPFALAAVLGMAWFLVGDTPSGLWLAVFLVGLGGGGESGTTKYLLMRYFGLRSFGVIYGSIQPFTFALSISL
GAYLLGWLYDRAEGYGTAEWVLLAAFSLAACSLFAFRPYPQKLP*

AnnotationID:1474 GeneID:1465

AnnotatorUID: diggins

Modification Date/Time: 2005-03-07 08:08:03

Gene Name:

Confidence Code: 3

GeneProduct: putative permease

Cell Localization: ()

Synonyms: PA2589

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (27) Transport of small molecules

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies): membrane proteins

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:14355

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20078

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33150

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1465_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1465

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2633 PA2589_tr translation of PA2589 404 99.00 99.25 0 2056.0

82318 gb|AAG05977.1|AE004687_6 (AE004687) hypothetical protein PA2589 [Pseudomonas aeruginosa PAO1] 404 98.76 99.25 0 2053.0

2634 PA2091_tr translation of PA2091 429 55.24 68.53 27 1191.0

82319 gb|AAG05479.1|AE004636_10 (AE004636) hypothetical protein PA2091 [Pseudomonas aeruginosa PAO1] 429 55.24 68.53 27 1191.0

GC ORFID: `44467`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2589`	Glimmer Score:
Start: `2302788`	Stop: `2301574`
Length: `1215`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2589 translation of PA2589`	Homolog Bit Score `796.0`
Other Homologs: `t_PA2091 (ORF: BLASTX 467.0), t_PA2589 (ORF: GLIMMER)`
GC ORF Sequence
GTGGCGCAACGAGAATTTTCCGCGACCAGCGGCGGCGTGCTGCTGGCGTCGGTGGTGGCGATCATGCTCGGG CCCACCGGCATCCTGCTGAACACCTTCAGTCTGTTCATCGCACCGATGAGCGCCGAGTACGCCTGGGACCGC GCCGAGGTGTCGTTGCTGGTGACGCTGTTcggaCTGGCGGTCGCCATCACcAGCccgttcaAgggctGGCTG AtcaacCGTTGGGGCGCGCGGCGGACAATGCtCGGGCTGACCGCGGCCCTGTCGCTGCCGCTGCTCGGCCTG GCGGCGGTGAATGCCGTCTGGCAACTCTACGCGCTGTTCCTGCTGATCGGCCTGCTGGCGCCAGGCAACCTG CCTTACGGACGTATCCTCGGACTCTGGTTCCGCCACCGCCTGGGCGTGGCCTACGGCCTGCTCGGCCTGGGC TTCGGGGTGGGCGGGCCGCTGGGCCTGCTGGTCGGCCACCAGAGCCTCGAAGCGTGGGGCTGGCGCGGCGCT TTCCTGGTCTACGGCGTGCTCGAACTGGGCCTGGCGCTGCCGCTGCTGGCCTGGCTGTTCCGCGAGCCAGCG CCGGGCGCTGGCGTGGCCGCCGGCACGGCCGTAGCGGAAACCGCGCTGAGCGGATCGACGGCGCCCCAGGCC TGGCGCAGCGCCAGTTTCTGGCTGGTGCTGGGCAACCAGGTACTGGCGGTGTTCGTAATGTCCGGGATCATG ACCCATGGCGTGCCGATGCTGGTGGAGCGCGGTTTGTCCCGGGGCGAGGCGGGCACCGCGCTGTCGGCGTTG TGGGTCGGCATGATGCTGTCGCAGCCGCTGATGGGCTGGCTTCTCGACCGCGTGGCGACGCCGCGGGTGGCG TTGCCCTTCGCCCTGGCGGCGGTGCTCGGCATGGCCTGGTTCCTGGTGGGCGACACACCGAGCGGTCTATGG CTGGCGGTGTTCCTGGTCGGCCTGGGCGGAGGAGGGGAAAGCGGCACCACCAAGTACCTGTTGATGCGCTAC TTCGGCCTGCGCAGCTTCGGTGTGATCTACGGTTCGATCCAGCCGTTCACCTTCGCCCTGTCGATCAGTCTC GGCGCTTACCTGCTGGGCTGGCTGTACGACCGCGCCGAAGGCTACGGGACGGCCGAATGGGTGCTGCTCGCG GCTTTTTCCCTGGCTGCGTGCAGCCTGTTCGCCTTTCGCCCCTATCCGCAGAAATTGCCCTGA