ViewGene
Locus Name:
GeneID:
Location:

GeneID:1463
TrivialName: PA14_73140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73140
PAO1 Ortholog Locus:PA5546
Sequence Length:1185
Protein Length:394
Start: 6513877
Stop: 6512693
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08931.1|AE004967_2 (AE004967) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 392/394 (99%), Positives = 394/394 (100%)
Sequence:
ATGATTGCACAGCTCCCCTCTGAGTTGCTGTCCCTGCAACTGCCGTTGCGGATCCGCATCGGCGATGCTCAG
GCGTTCGATCTGGGGCCGGATCCACAGGTAACCATGGTCATTCGCGATCCCTCGCTGCTAACCGAGATCACC
CATCCCAGCCTCGATGCGCTGGGCAAGGCCTACGTCGAGAAGCGTCTCGACATCGAAGGACCGATCAGCCAG
GTCATTGGTATCGGCGATGCCCTCAGCGAAGCGCTCGGCGAACCCGATGGCGGCGCGCCGCCGGTTCGCGAA
AGCCACGACAAGGACACCGACGCCGAAGCCATCCATTACCACTACGACCTGTCCAACGATTTCTACCAGCTC
TGGCTGGATCCGGAAATGGTCTATTCCTGCGCTTATTTCGAGACCGGCAAGGAAGACCTCGCCACCGCGCAA
CTGGCCAAGCTCCGTCACCTGTGCCGCAAGCTGCGTTTGCAGCCGGGCGAGAAGCTGCTCGATGTCGGTTGC
GGCTGGGGGGGCCTGGCGCGCCTGGCCGCTCGCGAGTTCGGCGTCGAGGTCACTGGCATCACATTGAGCAAG
GAGCAGCTGGCGCTCGGGCGGAAGCGGGTCAAGGCCGAAGGCCTGGAGGACCGGGTCACCCTCAAGCTGCTG
GACTACCGCGACCTGCCGCGCGATGGTCGCTTCGACAAGGTGGTCAGCGTCGGCATGTTCGAGCACGTCGGG
CACGCCAACCTGGGGCTGTACTTCCAGCAACTGTACGATGCGGTGCGTCCCGGCGGCCTGGTGATGAACCAC
GGCATCACCTCGCGCTACACCGACGGCCGCCCGGTGGGCAAGGGGGCCGGCGACTTCATCGATCGCTACGTG
TTTCCCCACGGCGAGCTGCCGCACCTGTCGCTGGCGGTGGCGCGGATGAGCGAAGCCGGGCTGGAAGTAGTC
GACGTGGAAAGCCTGCGTCTGCACTACGCCCGGACCCTGGACTTTTGGAGCGCCAACCTGGAAGCCAGGCTG
AAGGAGGCGGCTCGCCTGGTGCCCGAGGAAACCCTGCGGATCTGGCGGCTGTACCTGGCCGGATGTGCCTAC
GGCTTCAAGCGCGGCTGGATCAACCTGCACCAGATCCTCGCCATTCGCCCCCACGAGGATGGCTCCCACGAG
CTGCCCTGGTCGCGGCGCGACCTGTACGCCTGA
Translation:
MIAQLPSELLSLQLPLRIRIGDAQAFDLGPDPQVTMVIRDPSLLTEITHPSLDALGKAYVEKRLDIEGPISQ
VIGIGDALSEALGEPDGGAPPVRESHDKDTDAEAIHYHYDLSNDFYQLWLDPEMVYSCAYFETGKEDLATAQ
LAKLRHLCRKLRLQPGEKLLDVGCGWGGLARLAAREFGVEVTGITLSKEQLALGRKRVKAEGLEDRVTLKLL
DYRDLPRDGRFDKVVSVGMFEHVGHANLGLYFQQLYDAVRPGGLVMNHGITSRYTDGRPVGKGAGDFIDRYV
FPHGELPHLSLAVARMSEAGLEVVDVESLRLHYARTLDFWSANLEARLKEAARLVPEETLRIWRLYLAGCAY
GFKRGWINLHQILAIRPHEDGSHELPWSRRDLYA*
AnnotationID:1472GeneID:1463
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 07:07:53
Gene Name:
Confidence Code:3
GeneProduct:putative cyclopropan-fatty-acyl-phospholipid synthase
Cell Localization:()
Synonyms:PA5546
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2230
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70930.1|AE016737_1 (AE016794) cyclopropane-fatty-acyl-phospholipid synthase, putative
           [Pseudomonas putida KT2440]
          Length = 428

 Score =  565 bits (1455), Expect = e-160
 Identities = 269/393 (68%), Positives = 321/393 (81%)

>emb|CAD14296.1| (AL646060) PUTATIVE CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE
           PROTEIN [Ralstonia solanacearum]
          Length = 406

 Score =  365 bits (937), Expect = e-100
 Identities = 186/388 (47%), Positives = 256/388 (65%), Gaps = 8/388 (2%)








 
Structural Features:
COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases 
[Cell envelope biogenesis, outer membrane]
CD-Length = 283 residues,  98.9% aligned
Score =  352 bits (904), Expect = 5e-98
Identities = 145/286 (50%), Positives = 180/286 (62%), Gaps = 6/286 (2%)








   
Genomic Context:






   
Comment:


















    ReferenceID:2929




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20074




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33333




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1463_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1463
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2631
                           PA5546_tr
                           translation of PA5546
                           394
                           99.49
                           99.99
                           0
                           2058.0
     

     
     
82234
                           gb|AAG08931.1|AE004967_2
                           (AE004967) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           394
                           99.49
                           99.99
                           0
                           2058.0
     

     
     
82237
                           emb|CAD29691.1|
                           (AJ441309) putative cyclopropan-fatty-acyl-phospholipid synthase [Pseudomonas putida]
                           394
                           68.02
                           80.96
                           0
                           1437.0
     

     
     
82236
                           emb|CAA39234.1|
                           (X55704) unnamed protein product [Pseudomonas putida]
                           394
                           67.76
                           80.96
                           0
                           1444.0
     

     
     
82235
                           gb|AAN70930.1|AE016737_1
                           (AE016794) cyclopropane-fatty-acyl-phospholipid synthase, putative [Pseudomonas putida KT2440]
                           428
                           62.85
                           75.00
                           34
                           1454.0
     

     






      

          
GC ORFID: 44465How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5546Glimmer Score: 

          
Start: 5777566Stop: 5776382

          
Length: 1185


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5546 translation of PA5546Homolog Bit Score 797.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4164 (ORF: BLASTX 565.0), t_PA5546 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATTGCACAGCTCCCCTCTGAGTTGCTGTCCCTGCAACTGCCGTTGCGGATCCGCATCGGCGATGCTCAG 
GCGTTCGATCTGGGGCCGGATCCACAGGTAACCATGGTCATTCGCGATCCCTCGCTGCTAACCGAGATCACC 
CATCCCAGCCTCGATGCGCTGGGCAAGGCCTACGTCGAGAAGCGTCTCGACATCGAAGGACCGATCAGCCAG 
GTCATTGGTATCGGCGATGCCCTCAGCGAAGCGCTCGGCGAACCCGATGGCGGCGCGCCGCCGGTTCGCGAA 
AGCCACGACAAGGACACCGACGCCGAAGCCATCCATTACCACTACGACCTGTCCAACGATTTCTACCAGCTC 
TGGCTGGATCCGGAAATGGTCTATTCCTGCGCTTATTTCGAGACCGGCAAGGAAGACCTCGCCACCGCGCAA 
CTGGCCAAGCTCCGTCACCTGTGCCGCAAGCTGCGTTTGCAGCCGGGCGAGAAGCTGCTCGATGTCGGTTGC 
GGCTGGGGGGGCCTGGCGCGCCTGGCCGCTCGCGAGTTCGGCGTCGAGGTCACTGGCATCACATTGAGCAAG 
GAGCAGCTGGCGCTCGGGCGGAAGCGGGTCAAGGCCGAAGGCCTGGAGGACCGGGTCACCCTCAAGCTGCTG 
GACTACCGCGACCTGCCGCGCGATGGTCGCTTCGACAAGGTGGTCAGCGTCGGCATGTTCGAGCACGTCGGG 
CACGCCAACCTGGGGCTGTACTTCCAGCAACTGTACGATGCGGTGCGTCCCGGCGGCCTGGTGATGAACCAC 
GGCATCACCTCGCGCTACACCGACGGCCGCCCGGTGGGCAAGGGGGCCGGCGACTTCATCGATCGCTACGTG 
TTTCCCCACGGCGAGCTGCCGCACCTGTCGCTGGCGGTGGCGCGGATGAGCGAAGCCGGGCTGGAAGTAGTC 
GACGTGGAAAGCCTGCGTCTGCACTACGCCCGGACCCTGGACTTTTGGAGCGCCAACCTGGAAGCCAGGCTG 
AAGGAGGCGGCTCGCCTGGTGCCCGAGGAAACCCTGCGGATCTGGCGGCTGTACCTGGCCGGATGTGCCTAC 
GGCTTCAAGCGCGGCTGGATCAACCTGCACCAGATCCTCGCCATTCGCCCCCACGAGGATGGCTCCCACGAG 
CTGCCCTGGTCGCGGCGCGACCTGTACGCCTGA