ViewGene
Locus Name:
GeneID:
Location:

GeneID:1462
TrivialName: PA14_57360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57360
PAO1 Ortholog Locus:PA4413
Sequence Length:1200
Protein Length:399
Start: 5110888
Stop: 5109689
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07801.1|AE004856_12 (AE004856) cell division protein FtsW [Pseudomonas aeruginosa PAO1]
Identities = 399/399 (100%), Positives = 399/399 (100%)
Sequence:
ATGCTGTCGGTGTTGCGCCCCTTCCCGTCGCCGCTGTTGAGCCGGCACGGCATCGACCTGGACTTCCCGCTG
CTGGCGGGTTGCCTGGCGCTGCTCGGCCTCGGCCTGGTGATGGTGACTTCCGCCTCTTCCGAGGTGGCGGCG
GCGCAGTCGGGCAACCCGCTGTACTTCTCCGTCCGTCACCTGATCTACCTGGTGATCGGCCTGATTTCCTGC
GGCCTGACCATGATGGTCCCGATGGCCACCTGGCAGCGTTGGGGCTGGAAGCTGTTGCTGGTCGCCTTCGGC
CTGCTGGTGCTGGTGATCACCCCCGGTATCGGCCGCGAGGTGAACGGCTCGATGCGCTGGATCGGCTTCGGC
CTGTTCAACATCCAGCCTTCGGAGATCGCCAAGGTCTGCGTGGTGATCTTCATGGCCGGCTACCTGATCCGC
CGCCAGCAGGAGGTCCGGGAAAGCTGGATGGGCTTCTTCAAGCCCTTCGTGGTGTTGCTGCCGATGGCCGGC
CTGCTGCTGCGCGAGCCGGACTTCGGCGCCACCGTGGTAATGATGGGCGCTGCCGCGGCCATGCTGTTCCTC
GGCGGGGTGGGGCTGTTCCGCTTCGGCCTGATGGTGCTGCTGGCGGTCGGCGCGGTGGTCCTGCTGATCCAG
ACCCAGCCCTACCGGATGGCACGCCTGACCAACTTCACCGACCCCTGGGCCGACCAGTTCGGCGCCGGCTAT
CAGTTGAGCCAGGCGCTGATCGCCTTCGGCCGCGGCGGCTGGTTGGGCATGGGACTGGGCAACAGCATCCAG
AAGCAGTTCTACCTGCCGGAGGCGCACACCGACTTCGTCTTCGCCGTGCTTGCAGAGGAGCTGGGCATCGTC
GGCGCCCTGGCGACCGTCGCCCTGTTCGTGTTCGTCAGCCTGCGCGCGCTGTACATCGGCATCTGGGCCGAG
CAGGCCAAGCAGTTCTTCTCCGCCTACGTGGCCTACGGCCTGGCCTTCCTCTGGATCGGCCAGTTCCTGATC
AACATCGGGGTGAACGTCGGCCTGCTGCCGACCAAGGGCCTGACCCTGCCGTTCCTCAGCTACGGCGGCAGT
TCGCTGGTGATCTGCTGTGCCTGTCTGGGGATGTTGCTGCGCATCGAATGGGAACGGCGAACCCACCTGGGT
AGCGAGGAATATGAGTTCAACGAAGAGGACTTTGCCGATGAAAGGTAA
Translation:
MLSVLRPFPSPLLSRHGIDLDFPLLAGCLALLGLGLVMVTSASSEVAAAQSGNPLYFSVRHLIYLVIGLISC
GLTMMVPMATWQRWGWKLLLVAFGLLVLVITPGIGREVNGSMRWIGFGLFNIQPSEIAKVCVVIFMAGYLIR
RQQEVRESWMGFFKPFVVLLPMAGLLLREPDFGATVVMMGAAAAMLFLGGVGLFRFGLMVLLAVGAVVLLIQ
TQPYRMARLTNFTDPWADQFGAGYQLSQALIAFGRGGWLGMGLGNSIQKQFYLPEAHTDFVFAVLAEELGIV
GALATVALFVFVSLRALYIGIWAEQAKQFFSAYVAYGLAFLWIGQFLINIGVNVGLLPTKGLTLPFLSYGGS
SLVICCACLGMLLRIEWERRTHLGSEEYEFNEEDFADER*
AnnotationID:1471GeneID:1462
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 18:06:15
Gene Name:ftsW
Confidence Code:2
GeneProduct:cell division membrane protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0772,pfam01098
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57858.1| (AE016871) cell division protein FtsW [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 404

 Score =  676 bits (1744), Expect = 0.0
 Identities = 324/398 (81%), Positives = 367/398 (92%)


>gb|AAN66959.1|AE016324_9 (AE016779) cell division protein FtsW [Pseudomonas putida KT2440]
          Length = 404

 Score =  674 bits (1738), Expect = 0.0
 Identities = 322/398 (80%), Positives = 367/398 (92%)






 
Structural Features:
COG0772, FtsW, Bacterial cell division membrane protein 
[Cell division and chromosome partitioning]
CD-Length = 381 residues,  96.3% aligned
Score =  314 bits (807), Expect = 2e-86
Identities = 160/372 (43%), Positives = 224/372 (60%), Gaps = 9/372 (2%)

pfam01098, FTSW_RODA_SPOVE, Cell cycle protein. 
CD-Length = 356 residues,  99.2% aligned
Score =  283 bits (725), Expect = 7e-77
Identities = 161/358 (44%), Positives = 221/358 (61%), Gaps = 6/358 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2927




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20072




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:29568




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1462_cdd.html


    		




 
URL:

















    ReferenceID:32796




  
Author/Investigator(s):
        Azzolina BA, Yuan X, Anderson MS, El-Sherbeini M.





  
Title:
        The cell wall and cell division gene cluster in the Mra operon of Pseudomonas aeruginosa: cloning, production, and purification of active enzymes.




  
PubMed:
        11281713


MedLine:
        




    
Source:
Protein Expr Purif. 2001 Apr;21(3):393-400.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11281713









           
Homologs By Global Alignment 

           

       



     
Gene ID:1462
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2630
                           PA4413_tr
                           translation of PA4413
                           399
                           99.99
                           99.99
                           0
                           2058.0
     

     
     
82191
                           gb|AAG07801.1|AE004856_12
                           (AE004856) cell division protein FtsW [Pseudomonas aeruginosa PAO1]
                           399
                           99.99
                           99.99
                           0
                           2058.0
     

     
     
82192
                           gb|AAO57858.1|
                           (AE016871) cell division protein FtsW [Pseudomonas syringae pv. tomato str. DC3000]
                           404
                           80.19
                           90.84
                           5
                           1743.0
     

     
     
82193
                           gb|AAN66959.1|AE016324_9
                           (AE016779) cell division protein FtsW [Pseudomonas putida KT2440]
                           404
                           79.70
                           90.84
                           5
                           1737.0
     

     
     
82195
                           gb|AAD39750.1|AF123260_1
                           (AF123260) FtsW [Coxiella burnetii]
                           402
                           46.26
                           64.67
                           33
                           940.0
     

     






      

          
GC ORFID: 44464How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4413Glimmer Score: 

          
Start: 4374566Stop: 4373367

          
Length: 1200


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4413 translation of PA4413Homolog Bit Score 797.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1127 (ORF: BLASTX 677.0), t_PA4413 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGTCGGTGTTGCGCCCCTTCCCGTCGCCGCTGTTGAGCCGGCACGGCATCGACCTGGACTTCCCGCTG 
CTGGCGGGTTGCCTGGCGCTGCTCGGCCTCGGCCTGGTGATGGTGACTTCCGCCTCTTCCGAGGTGGCGGCG 
GCGCAGTCGGGCAACCCGCTGTACTTCTCCGTCCGTCACCTGATCTACCTGGTGATCGGCCTGATTTCCTGC 
GGCCTGACCATGATGGTCCCGATGGCCACCTGGCAGCGTTGGGGCTGGAAGCTGTTGCTGGTCGCCTTCGGC 
CTGCTGGTGCTGGTGATCACCCCCGGTATCGGCCGCGAGGTGAACGGCTCGATGCGCTGGATCGGCTTCGGC 
CTGTTCAACATCCAGCCTTCGGAGATCGCCAAGGTCTGCGTGGTGATCTTCATGGCCGGCTACCTGATCCGC 
CGCCAGCAGGAGGTCCGGGAAAGCTGGATGGGCTTCTTCAAGCCCTTCGTGGTGTTGCTGCCGATGGCCGGC 
CTGCTGCTGCGCGAGCCGGACTTCGGCGCCACCGTGGTAATGATGGGCGCTGCCGCGGCCATGCTGTTCCTC 
GGCGGGGTGGGGCTGTTCCGCTTCGGCCTGATGGTGCTGCTGGCGGTCGGCGCGGTGGTCCTGCTGATCCAG 
ACCCAGCCCTACCGGATGGCACGCCTGACCAACTTCACCGACCCCTGGGCCGACCAGTTCGGCGCCGGCTAT 
CAGTTGAGCCAGGCGCTGATCGCCTTCGGCCGCGGCGGCTGGTTGGGCATGGGACTGGGCAACAGCATCCAG 
AAGCAGTTCTACCTGCCGGAGGCGCACACCGACTTCGTCTTCGCCGTGCTTGCAGAGGAGCTGGGCATCGTC 
GGCGCCCTGGCGACCGTCGCCCTGTTCGTGTTCGTCAGCCTGCGCGCGCTGTACATCGGCATCTGGGCCGAG 
CAGGCCAAGCAGTTCTTCTCCGCCTACGTGGCCTACGGCCTGGCCTTCCTCTGGATCGGCCAGTTCCTGATC 
AACATCGGGGTGAACGTCGGCCTGCTGCCGACCAAGGGCCTGACCCTGCCGTTCCTCAGCTACGGCGGCAGT 
TCGCTGGTGATCTGCTGTGCCTGTCTGGGGATGTTGCTGCGCATCGAATGGGAACGGCGAACCCACCTGGGT 
AGCGAGGAATATGAGTTCAACGAAGAGGACTTTGCCGATGAAAGGTAA