ViewGene
Locus Name:
GeneID:
Location:

GeneID:1460
TrivialName: PA14_19350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19350
PAO1 Ortholog Locus:PA3461
Sequence Length:1197
Protein Length:398
Start: 1671485
Stop: 1670289
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06849.1|AE004766_10 (AE004766) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 398/398 (100%), Positives = 398/398 (100%)
Sequence:
ATGACCCCTCTGCCACAACCGGACCTCAACTACCTGCAACGGGTGCTGCTGGAGATGCTCGCCATCCCCAGC
CCCACCGGCTTCACCGATACCATCGTGCGCTATGTCGCCGAGCAGCTCGACGAACTTGGCGTGCCCTTCGAG
ATGACTCGCCGGGGAACCATCCGGGCGACCCTCCAGGGCCGCCTGAATACCCCGGACCGGGCGGTTTCCGCG
CACCTCGACACGATCGGCGCGCTGGTCCGCGAGATCAAGCCCAACGGCCGCCTCGGCCTGGCCCCGGTAGGC
TGCTGGTCGAGCCGCTTCGCCGAGGGTAGCCGGGTCACGGTGTTCACCGAACAGGGCGTGTTCCGTGGCAGC
GTGCTGCCGCTGCTGGCCTCAGGCCACGCCTTCAATACCGAGGTGGACAACCTGAAGATCAGCTGGGACAAC
ATCGAGCTGCGTCTCGACGCCTATACCGCCAGCCGCGCCGACAGCGAGAGCCTGGGCATCTCGGTGGGTGAC
TACGTGGCCTTCGATCCGTTGCCGGAGTTCACCGAGAGCGGCCATATCAGCGCCCGCCACCTGGACGACAAG
GCCGGGGTCGCGGCGCTGCTGGCGGCGCTGAAGGCGGTCAAGGAAAGCGGGCAGGAGCCGCCGATCGACTGC
CACCCGCTGTTCACCATCACCGAGGAAGTCGGCTCCGGCGCCGCCGGCGCCCTGCCCTGGGACGTCAGCGAG
TTCGTCGGCATCGACATCGCCCCGGTGGCCGAAGGCCAGAATTCCAACGAGCACAGCGTCAGCGTGGCCATG
CAGGACTCCGGCGGGCCCTACGACTTCCATCTGTCCCGGCACCTGCTGCGGCTCGGCGAGCGCCACGACATC
GCCCTGCGCCGCGACCTGTTCCGCTACTACCACAGCGACGCGCAGTCGGCGATCGCCGCCGGCCACGACACC
CGCGCCGCGCTGCTGGCGTTCGGCTGCGACGCCACCCACGGCTACGAGCGCACGCACATCGACAGCCTCGCC
GCGCTGAGCCGCCTGCTCACTGCCTACATCCTCAGCCCGCCGGTCTTCGCCAGCGACGCCAAGCCCCGGGAA
ACCTCGCTGGAACGTTTCAACAAGCAGCTCGAGCATCCGGTGCACATGGAAAGCTGCACCCACGTCCCGCCA
GTGGACGAAGTGCTCGACAGCAGCAACAACAGCGACAAGGGCTGA
Translation:
MTPLPQPDLNYLQRVLLEMLAIPSPTGFTDTIVRYVAEQLDELGVPFEMTRRGTIRATLQGRLNTPDRAVSA
HLDTIGALVREIKPNGRLGLAPVGCWSSRFAEGSRVTVFTEQGVFRGSVLPLLASGHAFNTEVDNLKISWDN
IELRLDAYTASRADSESLGISVGDYVAFDPLPEFTESGHISARHLDDKAGVAALLAALKAVKESGQEPPIDC
HPLFTITEEVGSGAAGALPWDVSEFVGIDIAPVAEGQNSNEHSVSVAMQDSGGPYDFHLSRHLLRLGERHDI
ALRRDLFRYYHSDAQSAIAAGHDTRAALLAFGCDATHGYERTHIDSLAALSRLLTAYILSPPVFASDAKPRE
TSLERFNKQLEHPVHMESCTHVPPVDEVLDSSNNSDKG*
AnnotationID:1469GeneID:1460
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 21:09:40
Gene Name:
Confidence Code:3
GeneProduct:putative peptidase or cellulase
Cell Localization:()
Synonyms:PA3461
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05343,COG1363
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam05343, Peptidase_M42, M42 glutamyl aminopeptidase.
CD-Length = 295 residues, 100.0% aligned
Score =  259 bits (664), Expect = 4e-70
Identities = 99/303 (32%), Positives = 150/303 (49%), Gaps = 21/303 (6%)

COG1363, FrvX, Cellulase M and related proteins 
[Carbohydrate transport and metabolism]
CD-Length = 355 residues,  98.6% aligned
Score =  321 bits (824), Expect = 1e-88
Identities = 109/355 (30%), Positives = 173/355 (48%), Gaps = 15/355 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2923




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20068




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32102




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1460_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1460
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2628
                           PA3461_tr
                           translation of PA3461
                           398
                           99.99
                           99.99
                           0
                           2059.0
     

     
     
82183
                           gb|AAG06849.1|AE004766_10
                           (AE004766) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           398
                           99.99
                           99.99
                           0
                           2059.0
     

     
     
82185
                           gb|AAN67368.1|AE016362_12
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           399
                           78.19
                           88.47
                           6
                           1638.0
     

     
     
82184
                           gb|AAO55151.1|
                           (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           400
                           78.00
                           88.00
                           4
                           1644.0
     

     
     
82186
                           emb|CAC48848.1|
                           (AL603643) hypothetical glucanase protein [Sinorhizobium meliloti]
                           399
                           46.11
                           61.15
                           15
                           903.0
     

     






      

          
GC ORFID: 44462How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3461Glimmer Score: 

          
Start: 3282447Stop: 3283643

          
Length: 1197


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3461 translation of PA3461Homolog Bit Score 797.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene5990 (ORF: BLASTX 636.0), t_PA3461 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCCTCTGCCACAACCGGACCTCAACTACCTGCAACGGGTGCTGCTGGAGATGCTCGCCATCCCCAGC 
CCCACCGGCTTCACCGATACCATCGTGCGCTATGTCGCCGAGCAGCTCGACGAACTTGGCGTGCCCTTCGAG 
ATGACTCGCCGGGGAACCATCCGGGCGACCCTCCAGGGCCGCCTGAATACCCCGGACCGGGCGGTTTCCGCG 
CACCTCGACACGATCGGCGCGCTGGTCCGCGAGATCAAGCCCAACGGCCGCCTCGGCCTGGCCCCGGTAGGC 
TGCTGGTCGAGCCGCTTCGCCGAGGGTAGCCGGGTCACGGTGTTCACCGAACAGGGCGTGTTCCGTGGCAGC 
GTGCTGCCGCTGCTGGCCTCAGGCCACGCCTTCAATACCGAGGTGGACAACCTGAAGATCAGCTGGGACAAC 
ATCGAGCTGCGTCTCGACGCCTATACCGCCAGCCGCGCCGACAGCGAGAGCCTGGGCATCTCGGTGGGTGAC 
TACGTGGCCTTCGATCCGTTGCCGGAGTTCACCGAGAGCGGCCATATCAGCGCCCGCCACCTGGACGACAAG 
GCCGGGGTCGCGGCGCTGCTGGCGGCGCTGAAGGCGGTCAAGGAAAGCGGGCAGGAGCCGCCGATCGACTGC 
CACCCGCTGTTCACCATCACCGAGGAAGTCGGCTCCGGCGCCGCCGGCGCCCTGCCCTGGGACGTCAGCGAG 
TTCGTCGGCATCGACATCGCCCCGGTGGCCGAAGGCCAGAATTCCAACGAGCACAGCGTCAGCGTGGCCATG 
CAGGACTCCGGCGGGCCCTACGACTTCCATCTGTCCCGGCACCTGCTGCGGCTCGGCGAGCGCCACGACATC 
GCCCTGCGCCGCGACCTGTTCCGCTACTACCACAGCGACGCGCAGTCGGCGATCGCCGCCGGCCACGACACC 
CGCGCCGCGCTGCTGGCGTTCGGCTGCGACGCCACCCACGGCTACGAGCGCACGCACATCGACAGCCTCGCC 
GCGCTGAGCCGCCTGCTCACTGCCTACATCCTCAGCCCGCCGGTCTTCGCCAGCGACGCCAAGCCCCGGGAA 
ACCTCGCTGGAACGTTTCAACAAGCAGCTCGAGCATCCGGTGCACATGGAAAGCTGCACCCACGTCCCGCCA 
GTGGACGAAGTGCTCGACAGCAGCAACAACAGCGACAAGGGCTGA