ViewGene

Locus Name:
GeneID:
Location:

GeneID: 146

TrivialName: PA14_70070

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_70070

PAO1 Ortholog Locus: PA5307

Sequence Length: 2565

Protein Length: 854

Start: 6250215

Stop: 6247651

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08692.1|AE004943_8 (AE004943) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 850/855 (99%), Positives = 850/855 (99%), Gaps = 1/855 (0%)

Sequence:

ATGCGTTTGCGCAGAAGGACGACGTTGCTGCTGGTATTTGCAGTGCTGTTGCTGCTGGCATTCGGCTACGGC
TGGCATGCCTGGCGCAGCCTGTTGCGCGAGCAGGGTGTCGAGCGCCTGGAGTGGCAAGGCCTGGGCCTGTCC
GCCGAAGGCATCGGGCTGCGACGGCTGGCGCTGGAGCGGCGCGGCGCGGATGGCGCCAGCCTGCGACTGGAC
GTGGAACACGCGCTGCTGCGCTGGCCCGGGCTGTCGGGTTGGCGTCCGCGTCTACCCGGCCTGCGCGTGGAG
CAAGTGGCGCTCGCCTGGCAACCGGCTGCCGCGAGTTCCGACGACTCCGCTGCGCTGGACTGGACGTCCCTA
CGCGAGACCCTCGCCTGGCTGCCGGAACAGATCCACCTCGAACGCTTCCATCTCGACCTGCCTTGTCCCGCC
GGCCGCTGCGAGCAGGACGGCGGGCTGGACATCGGCCGCCCGTCGGGAGCGCTGTTTCCGCTGGCTGCGCAA
CTGCGCCTGCAACAAGAGGCGCAGCAGGCCCAGCTCGACGCCCAGCTCTTCGAGGAGCCTACCGGTTGGCGC
CTGCGGGCGCGCGCGCAACTCGACCGGCAGGCGCTGCTGACGCTGGACAGCCAGCTCGCGCCGTCCGATGGC
GACGGCCTCTGGCAGGGGCGCCTGGAGGCGCCCGGCCTGCCGGACACCCGTGGCCTGGTGGTCTGGCTCAAT
CGCTGGTTGCCGGAAGCCCAGCGCCTGCCCGACGCACCGCAAGCCCTGCGTCTGCAAGCGGACTGGACGATC
CGCCTGGCGCCTGGCCGCGACTGGCTGGAGCCGCGCCGGGTGCTCGACGGCGGTGGCTCGGCGGCGCTGCTG
GTGCAGGCTCCGCAAGCCTGGCCGCTGCCCGGTCTGGGTAATGTACAGGGCGAACTGCAAGTCCAACTGGAT
GGAGACGAGGGCGCCTGGTTGCCACGCCAGCTGCGCAGCGACTTGCGCCTGAGCCAGTTGCACGGCGAGTGG
TTGCAGGCGCTGCCGGCCGAGTTGCGGCCGAGCGCGCTGGGCTTGCGCAGCGAGCCGCTGGAGCGCGATGCC
GATAGCGTCACCGCGTTGCGCCTGGCGTTCACCAGCGAGGGCGCAAGTACGCTGAAGCTGGAGACGCGGCTC
GACCTGCTGGGCATCTCGCCGTGGGCCGCCAGGCTGGTGGAGGGGCGCTTGCAGGTGGACGCGCCGCGCCTG
CAATACCTGGGCTGGAAAGCCGAGCGACTGGTCGCGGAGATTCCCCTGGAGGGCCGGCTGGACGGGCAGCGC
GCCAACCTCTCCTTCGGCAGGGGCGCGCGGTTGCAGGCGGCGTCCCTGGCCGAGCCGTCGACGCTGCACCTT
GGCCAGCCCCGCCTCAATCTCGCCGGGACCGCTCTCGAACTGGCCTACCAGCCGCTGGCGCTGCATTTCGCC
GGGCCGCTGCAGGCGCAGGTCGGACAACTCCGCCAGGCCAACCTCAAGCCGTTGGCCTGGACCTTCGAGGGG
CCGCTCGACACCACCCTCGAGCGCACCAGCCTGAAGGGACGGCTGAGCAACGGTGCGGGGCTGGCGGCGGAC
ATCCAGCTGCAGCGCGATGCGAAGACGCCCCTGGCACTCTCCGCCAAGCTGGCCGAGGTGTTCTTCCGTACC
GGCAATCCGCTGGCCGCGACCCTCGCCGACTGGCCGGGGCTGCTCGAACTGGGCAATGGGCGCGCGACCGCC
GCGGCCGGCTGGAAGCTCGACGCGGCGGGTGGCTCGTCCCTCGACCTGGACCTGACCCTGAAAGGCCTCGAC
GGTATCTACGACCGCAGCGAGCTGAAGGGGCTGGGCGGCAGCCTGGCCTTGCGCCTGCGCGGCGGTCAGTTG
AGCCTGGACAGCCCCGGCCTGAGCCTGGCCGAGGCCAATCCCGGCCTGCCGCTGGGGCCGGTGAGTTTCCGC
GGGCGCTACGAGGCCCCGCTTTCCGCGCCGGGCAGCGGCCGCCTGAGCTGGCAGACGTTGCAGAGCGGCCTG
TTCGGCGGGCAGGCCTCGGTCCCCGCGGGGAGCATCCGCCTGGGTCAGGCCGAGCAGAAGTTCGCCTTGCGT
ATCCAGGGCATACAACTTGGCGAGATTTTCCGGGTCTATCCGGCGGAGGGCCTGGCCGGCGAAGGCACCCTG
GACGGCGAGCTGCCGCTGATGCTGAACCGCTGGAAGCCCAGCGTCTCCGGCGGCCAGGTCAAGGCCCGCGAG
CCCGGCTACCTGCGCTTCCGCTCGGCGAAAATCGAGGCGCTGGGGCGCAGTAACCCGGGGATGAAGCTGGTC
GCCGATGCCCTCGACGATTTCCACTACGACGTCCTGCAAAGCAGCGTCGATTATCATGAGAACGGCAAGCTG
TTGCTCGGCCTGCGCTTGCAGGGCAGCAACCCGGACCTGGAGAAGGGGCGCCCGGTCAACCTCAACGTCAAC
CTGGAGGAGGATATCCCGGCACTGCTGACCAGCCTGCAACTGAGCGACCGGGTCAGCGAAACCATTCGCCAA
CGTGTGCAGGAGCGCATGCAGAAACGCAAGGCTTCGGCGCCATGA

Translation:

MRLRRRTTLLLVFAVLLLLAFGYGWHAWRSLLREQGVERLEWQGLGLSAEGIGLRRLALERRGADGASLRLD
VEHALLRWPGLSGWRPRLPGLRVEQVALAWQPAAASSDDSAALDWTSLRETLAWLPEQIHLERFHLDLPCPA
GRCEQDGGLDIGRPSGALFPLAAQLRLQQEAQQAQLDAQLFEEPTGWRLRARAQLDRQALLTLDSQLAPSDG
DGLWQGRLEAPGLPDTRGLVVWLNRWLPEAQRLPDAPQALRLQADWTIRLAPGRDWLEPRRVLDGGGSAALL
VQAPQAWPLPGLGNVQGELQVQLDGDEGAWLPRQLRSDLRLSQLHGEWLQALPAELRPSALGLRSEPLERDA
DSVTALRLAFTSEGASTLKLETRLDLLGISPWAARLVEGRLQVDAPRLQYLGWKAERLVAEIPLEGRLDGQR
ANLSFGRGARLQAASLAEPSTLHLGQPRLNLAGTALELAYQPLALHFAGPLQAQVGQLRQANLKPLAWTFEG
PLDTTLERTSLKGRLSNGAGLAADIQLQRDAKTPLALSAKLAEVFFRTGNPLAATLADWPGLLELGNGRATA
AAGWKLDAAGGSSLDLDLTLKGLDGIYDRSELKGLGGSLALRLRGGQLSLDSPGLSLAEANPGLPLGPVSFR
GRYEAPLSAPGSGRLSWQTLQSGLFGGQASVPAGSIRLGQAEQKFALRIQGIQLGEIFRVYPAEGLAGEGTL
DGELPLMLNRWKPSVSGGQVKAREPGYLRFRSAKIEALGRSNPGMKLVADALDDFHYDVLQSSVDYHENGKL
LLGLRLQGSNPDLEKGRPVNLNVNLEEDIPALLTSLQLSDRVSETIRQRVQERMQKRKASAP*

AnnotationID:156 GeneID:146

AnnotatorUID: diggins

Modification Date/Time: 2005-03-16 13:01:45

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA5307

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:295

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17437

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:146

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

267 PA5307_tr translation of PA5307 855 99.41 99.41 1 4351.0

17790 gb|AAG08692.1|AE004943_8 (AE004943) hypothetical protein PA5307 [Pseudomonas aeruginosa PAO1] 855 99.41 99.41 1 4351.0

GC ORFID: `43148`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA5307`	Glimmer Score:
Start: `5513904`	Stop: `5511340`
Length: `2565`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA5307 translation of PA5307`	Homolog Bit Score `1679.0`
Other Homologs: `t_PA5307 (ORF: GLIMMER)`
GC ORF Sequence
ATGCGTTTGCGCAGAAGGACGACGTTGCTGCTGGTATTTGCAGTGCTGTTGCTGCTGGCATTCGGCTACGGC TGGCATGCCTGGCGCAGCCTGTTGCGCGAGCAGGGTGTCGAGCGCCTGGAGTGGCAAGGCCTGGGCCTGTCC GCCGAAGGCATCGGGCTGCGACGGCTGGCGCTGGAGCGGCGCGGCGCGGATGGCGCCAGCCTGCGACTGGAC GTGGAACACGCGCTGCTGCGCTGGCCCGGGCTGTCGGGTTGGCGTCCGCGTCTACCCGGCCTGCGCGTGGAG CAAGTGGCGCTCGCCTGGCAACCGGCTGCCGCGAGTTCCGACGACTCCGCTGCGCTGGACTGGACGTCCCTA CGCGAGACCCTCGCCTGGCTGCCGGAACAGATCCACCTCGAACGCTTCCATCTCGACCTGCCTTGTCCCGCC GGCCGCTGCGAGCAGGACGGCGGGCTGGACATCGGCCGCCCGTCGGGAGCGCTGTTTCCGCTGGCTGCGCAA CTGCGCCTGCAACAAGAGGCGCAGCAGGCCCAGCTCGACGCCCAGCTCTTCGAGGAGCCTACCGGTTGGCGC CTGCGGGCGCGCGCGCAACTCGACCGGCAGGCGCTGCTGACGCTGGACAGCCAGCTCGCGCCGTCCGATGGC GACGGCCTCTGGCAGGGGCGCCTGGAGGCGCCCGGCCTGCCGGACACCCGTGGCCTGGTGGTCTGGCTCAAT CGCTGGTTGCCGGAAGCCCAGCGCCTGCCCGACGCACCGCAAGCCCTGCGTCTGCAAGCGGACTGGACGATC CGCCTGGCGCCTGGCCGCGACTGGCTGGAGCCGCGCCGGGTGCTCGACGGCGGTGGCTCGGCGGCGCTGCTG GTGCAGGCTCCGCAAGCCTGGCCGCTGCCCGGTCTGGGTAATGTACAGGGCGAACTGCAAGTCCAACTGGAT GGAGACGAGGGCGCCTGGTTGCCACGCCAGCTGCGCAGCGACTTGCGCCTGAGCCAGTTGCACGGCGAGTGG TTGCAGGCGCTGCCGGCCGAGTTGCGGCCGAGCGCGCTGGGCTTGCGCAGCGAGCCGCTGGAGCGCGATGCC GATAGCGTCACCGCGTTGCGCCTGGCGTTCACCAGCGAGGGCGCAAGTACGCTGAAGCTGGAGACGCGGCTC GACCTGCTGGGCATCTCGCCGTGGGCCGCCAGGCTGGTGGAGGGGCGCTTGCAGGTGGACGCGCCGCGCCTG CAATACCTGGGCTGGAAAGCCGAGCGACTGGTCGCGGAGATTCCCCTGGAGGGCCGGCTGGACGGGCAGCGC GCCAACCTCTCCTTCGGCAGGGGCGCGCGGTTGCAGGCGGCGTCCCTGGCCGAGCCGTCGACGCTGCACCTT GGCCAGCCCCGCCTCAATCTCGCCGGGACCGCTCTCGAACTGGCCTACCAGCCGCTGGCGCTGCATTTCGCC GGGCCGCTGCAGGCGCAGGTCGGACAACTCCGCCAGGCCAACCTCAAGCCGTTGGCCTGGACCTTCGAGGGG CCGCTCGACACCACCCTCGAGCGCACCAGCCTGAAGGGACGGCTGAGCAACGGTGCGGGGCTGGCGGCGGAC ATCCAGCTGCAGCGCGATGCGAAGACGCCCCTGGCACTCTCCGCCAAGCTGGCCGAGGTGTTCTTCCGTACC GGCAATCCGCTGGCCGCGACCCTCGCCGACTGGCCGGGGCTGCTCGAACTGGGCAATGGGCGCGCGACCGCC GCGGCCGGCTGGAAGCTCGACGCGGCGGGTGGCTCGTCCCTCGACCTGGACCTGACCCTGAAAGGCCTCGAC GGTATCTACGACCGCAGCGAGCTGAAGGGGCTGGGCGGCAGCCTGGCCTTGCGCCTGCGCGGCGGTCAGTTG AGCCTGGACAGCCCCGGCCTGAGCCTGGCCGAGGCCAATCCCGGCCTGCCGCTGGGGCCGGTGAGTTTCCGC GGGCGCTACGAGGCCCCGCTTTCCGCGCCGGGCAGCGGCCGCCTGAGCTGGCAGACGTTGCAGAGCGGCCTG TTCGGCGGGCAGGCCTCGGTCCCCGCGGGGAGCATCCGCCTGGGTCAGGCCGAGCAGAAGTTCGCCTTGCGT ATCCAGGGCATACAACTTGGCGAGATTTTCCGGGTCTATCCGGCGGAGGGCCTGGCCGGCGAAGGCACCCTG GACGGCGAGCTGCCGCTGATGCTGAACCGCTGGAAGCCCAGCGTCTCCGGCGGCCAGGTCAAGGCCCGCGAG CCCGGCTACCTGCGCTTCCGCTCGGCGAAAATCGAGGCGCTGGGGCGCAGTAACCCGGGGATGAAGCTGGTC GCCGATGCCCTCGACGATTTCCACTACGACGTCCTGCAAAGCAGCGTCGATTATCATGAGAACGGCAAGCTG TTGCTCGGCCTGCGCTTGCAGGGCAGCAACCCGGACCTGGAGAAGGGGCGCCCGGTCAACCTCAACGTCAAC CTGGAGGAGGATATCCCGGCACTGCTGACCAGCCTGCAACTGAGCGACCGGGTCAGCGAAACCATTCGCCAA CGTGTGCAGGAGCGCATGCAGAAACGCAAGGCTTCGGCGCCATGA