ViewGene

Locus Name:
GeneID:
Location:

GeneID:1459
TrivialName: PA14_68530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68530
PAO1 Ortholog Locus:PA5188
Sequence Length:1236
Protein Length:411
Start: 6114345
Stop: 6113110
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08573.1|AE004931_10 (AE004931) probable 3-hydroxyacyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 405/411 (98%), Positives = 407/411 (99%)
Sequence:
ATGAGCCAGAACTTTTCCTTCCGCCAGGCCGCGGTGATCGGCGCCGGCACCATGGGTCGCGGTATCGTCATG
TGCCTGGCCAACGCCGGTCTCGACGTGCAGTGGCTGGACAGCAACCCGCAGATGCTCAACCAGGCGCTCGGC
GCCGTGGCCGACACCTACGCGCACAACGTGCGCCAGGGGCGCATCGGCGAAGAGGAAGCGGCCGCGCGCCGC
GCCCGCATCACGCCGGTCCAGCACCTCGCCGCGATGCGCGAGGCGGACCTGGTGATCGAGGCGGTCTACGAG
AACCTGGAACTCAAGCAATCGATCTTCCGCGAGCTGGACGCGGCGCTGAAGCCCTCCGCGGTGCTGGCCAGC
AATACTTCCTACCTGGACATCGACGCCATCGCCGCGGTCACCGCGCGTCCGGGTCAGGTGCTCGGCCTGCAC
TTCTTCAGCCCGGCGCACATCATGCGGCTGCTGGAGATCGTGCGTGGCGCGCAGACCGCGCCGGCGGTGCTG
GAGGCGGCCCTGGCGCTGGGCGAGCGGATGGGCAAGGTCAGCGTAGTGGCCGGCAACTGCCACGGCTTCATC
GGCAACCGCATGCTCGAACCCTACGCCACCGAGGCCCGCCTGATGCTGCTGGAAGGCGCCCTGCCGTACCAG
GTGGACCGGGCTCTCCAGGCGTTCGGTTTCGCCATGGGGCCGTTCCGCATGTACGACGTGGTCGGTATCGAC
CTGGAGTGGCGCGCCCGCGAGTTGGCCGGGGTCGGCCAGGACCAGCCGGCCGTGCAGGTGGACAACCGCCTT
TGCGAGCTGGGCCGCTTCGGCCAGAAGAGCGGTGCCGGTTACTACCGCTACGCGCCGGGCAGCCGCCAGGCG
GAGCACGATACCGAGGTGGATGCCCTGGTGCTCCGGGTTGCCGAGACGCTGGGCTACCCGCGGCGCGATTTC
GTCGACGAGGAAATCCTCGAGCGTTGCCTGCTGGCGCTGGTCAACGAGGGCGCGAAGATCCTCGACGAGGGT
ATCGCCGCCCGTAGCGCCGACATCGACACTGTCTACCTGAACGGCTACGGCTTCCCCGCCGCGGAGGGCGGT
CCCATGGCCTGGGCCGATCGCCTCGGCGCGGCCGAGCTGCTGCAACGCCTGCGTTTCCTCGAGCAGCGCCAC
GGCGTGCGCTGGAAGCCGGCGTCCCTGGTCGAGCGCCTGGCCGCCGAGGGCGGAGCCTTCGCCGACCTGCAG
GAGGCGCGCTGA
Translation:
MSQNFSFRQAAVIGAGTMGRGIVMCLANAGLDVQWLDSNPQMLNQALGAVADTYAHNVRQGRIGEEEAAARR
ARITPVQHLAAMREADLVIEAVYENLELKQSIFRELDAALKPSAVLASNTSYLDIDAIAAVTARPGQVLGLH
FFSPAHIMRLLEIVRGAQTAPAVLEAALALGERMGKVSVVAGNCHGFIGNRMLEPYATEARLMLLEGALPYQ
VDRALQAFGFAMGPFRMYDVVGIDLEWRARELAGVGQDQPAVQVDNRLCELGRFGQKSGAGYYRYAPGSRQA
EHDTEVDALVLRVAETLGYPRRDFVDEEILERCLLALVNEGAKILDEGIAARSADIDTVYLNGYGFPAAEGG
PMAWADRLGAAELLQRLRFLEQRHGVRWKPASLVERLAAEGGAFADLQEAR*
AnnotationID:1468GeneID:1459
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 17:05:43
Gene Name:
Confidence Code:3
GeneProduct:putative 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Cell Localization:()
Synonyms:PA5188
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1250,pfam02737
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67661.1|AE016396_3 (AE016781) 3-hydroxyacyl-CoA dehydrogenase family protein
           [Pseudomonas putida KT2440]
          Length = 412

 Score =  526 bits (1354), Expect = e-148
 Identities = 275/404 (68%), Positives = 306/404 (75%)

>emb|CAE44995.1| (BX640412) probable enoyl-CoA hydratase/3-hydroxyacyl-CoA
           dehydrogenase, bifunctional enzyme [Bordetella
           pertussis]
          Length = 705

 Score =  378 bits (970), Expect = e-104
 Identities = 200/403 (49%), Positives = 269/403 (66%), Gaps = 6/403 (1%)
Structural Features:
COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
CD-Length = 307 residues,  99.0% aligned
Score =  291 bits (747), Expect = 7e-80
Identities = 121/304 (39%), Positives = 174/304 (57%), Gaps = 6/304 (1%)

pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
CD-Length = 185 residues,  97.8% aligned
Score =  189 bits (481), Expect = 6e-49
Identities = 77/181 (42%), Positives = 118/181 (65%)

Genomic Context:
Comment:
ReferenceID:2921
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20066
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34907
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1459_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1459

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2627 PA5188_tr translation of PA5188 411 98.54 99.02 0 2060.0
82166 gb|AAG08573.1|AE004931_10 (AE004931) probable 3-hydroxyacyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1] 411 98.54 99.02 0 2060.0
82167 gb|AAN67661.1|AE016396_3 (AE016781) 3-hydroxyacyl-CoA dehydrogenase family protein [Pseudomonas putida KT2440] 412 66.99 74.75 1 1354.0
82179 emb|CAC49951.1| (AL603647) putative 3-hydroxyacyl-CoA dehydrogenase protein [Sinorhizobium meliloti] 449 37.19 51.44 49 705.0
82180 emb|CAC10603.1| (AJ278756) putative 3-hydroxyacyl-CoA-dehydrogenase [Azoarcus evansii] 525 30.47 42.09 129 527.0
GC ORFID: 44461How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5188Glimmer Score:
Start: 5378031Stop: 5376796
Length: 1236
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5188 translation of PA5188Homolog Bit Score 798.0
Other Homologs: t_PA5188 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCCAGAACTTTTCCTTCCGCCAGGCCGCGGTGATCGGCGCCGGCACCATGGGTCGCGGTATCGTCATG
TGCCTGGCCAACGCCGGTCTCGACGTGCAGTGGCTGGACAGCAACCCGCAGATGCTCAACCAGGCGCTCGGC
GCCGTGGCCGACACCTACGCGCACAACGTGCGCCAGGGGCGCATCGGCGAAGAGGAAGCGGCCGCGCGCCGC
GCCCGCATCACGCCGGTCCAGCACCTCGCCGCGATGCGCGAGGCGGACCTGGTGATCGAGGCGGTCTACGAG
AACCTGGAACTCAAGCAATCGATCTTCCGCGAGCTGGACGCGGCGCTGAAGCCCTCCGCGGTGCTGGCCAGC
AATACTTCCTACCTGGACATCGACGCCATCGCCGCGGTCACCGCGCGTCCGGGTCAGGTGCTCGGCCTGCAC
TTCTTCAGCCCGGCGCACATCATGCGGCTGCTGGAGATCGTGCGTGGCGCGCAGACCGCGCCGGCGGTGCTG
GAGGCGGCCCTGGCGCTGGGCGAGCGGATGGGCAAGGTCAGCGTAGTGGCCGGCAACTGCCACGGCTTCATC
GGCAACCGCATGCTCGAACCCTACGCCACCGAGGCCCGCCTGATGCTGCTGGAAGGCGCCCTGCCGTACCAG
GTGGACCGGGCTCTCCAGGCGTTCGGTTTCGCCATGGGGCCGTTCCGCATGTACGACGTGGTCGGTATCGAC
CTGGAGTGGCGCGCCCGCGAGTTGGCCGGGGTCGGCCAGGACCAGCCGGCCGTGCAGGTGGACAACCGCCTT
TGCGAGCTGGGCCGCTTCGGCCAGAAGAGCGGTGCCGGTTACTACCGCTACGCGCCGGGCAGCCGCCAGGCG
GAGCACGATACCGAGGTGGATGCCCTGGTGCTCCGGGTTGCCGAGACGCTGGGCTACCCGCGGCGCGATTTC
GTCGACGAGGAAATCCTCGAGCGTTGCCTGCTGGCGCTGGTCAACGAGGGCGCGAAGATCCTCGACGAGGGT
ATCGCCGCCCGTAGCGCCGACATCGACACTGTCTACCTGAACGGCTACGGCTTCCCCGCCGCGGAGGGCGGT
CCCATGGCCTGGGCCGATCGCCTCGGCGCGGCCGAGCTGCTGCAACGCCTGCGTTTCCTCGAGCAGCGCCAC
GGCGTGCGCTGGAAGCCGGCGTCCCTGGTCGAGCGCCTGGCCGCCGAGGGCGGAGCCTTCGCCGACCTGCAG
GAGGCGCGCTGA