ViewGene
Locus Name:
GeneID:
Location:

GeneID:1458
TrivialName: PA14_59790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59790
PAO1 Ortholog Locus:
Sequence Length:1200
Protein Length:399
Start: 5324829
Stop: 5323630
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84164.1| (AY273869) PvrR [Pseudomonas aeruginosa]
Identities = 399/399 (100%), Positives = 399/399 (100%)
Sequence:
ATGAGCTGGAAATCCTATCGGGTGCTGGTGGTCGAAGATCAGCCGTTTCAGCGCGAATACCTGCTCAACCTG
TTTCGCGAGCGCGGCGTGCAGTACCTGGTAGGTGCCGGCGACGGCGCGGAGGCGTTGCGCTGCCTGAAGCAG
GACAGGTTCGACCTGATCCTCAGCGATCTGATGATGCCGGGCATGGATGGTATCCAAATGATCCTGCAACTG
CCGTATCTCAAGCATCGTCCGAAGCTGGCGCTGATGAGCTCCTCGTCGCAGCGGATGATGCTCAGTGCCAGC
CGGGTCGCCCAGAGTCTCGGCTTGTCGGTAATCGACCTGTTGCCCAAGCCGACTCTGCCCAAGGCCATCGGC
CAACTTCTGGAACACCTGGAAAGATGCCTCAGGCAGAAGCTGGAGCCGGAAACCGACGAGACTCCGCATGGG
CGCACGGCGTTGCTGGATGCCCTGCATAACGAGCAACTGGTGACCTGGTTCCAGGCTAAGAAATCCCTCCAC
ACCGGGCGCATAGTCGGCGCCGAGGCGTTGATACGCTGGAGCCACCCGCAGCATGGCCTGTTGCTGCCCAGC
TGTTTCATGAGTGATGTCGACGCTACCGGTCTGCACGAGGCGTTGCTCTGGCGCGTGCTCGAACAGACCCTG
AACGCCCAGGAATCGTGGCGCAGGGCGGGTTACGAGATTCCGGTTTCGGTGAATCTGCCGCCGCACCTGCTC
GATAACCAGGAACTTCCGGATCGACTCTATGAGTACGTCGGCGCTCGCGGGGCTTGTACCAGCTCACTATGT
TTCGAGTTGACCGAGAGCAGTGTCACAACTCTGTCAAGTAACTACTATGCAGGTGCCTGTCGCTTGCGCATG
AAAGGGTTCGGATTGGCCCAGGACGACTTTGGCCAGGGTTACAGCTCGTTCTATAACCTGGTCACGACGCCT
TTCACGGAGCTGAAGATCGACCGCTCCCTAGTCCAGGGATGCGTAGAGGATAACGGCCTCAATGCAGCTGTC
ATCAGTTGTATTGAGTTGGGTCACCGCCTGAATCTCGACGTGGTGGCCGAAGGCGTGGAGACCTGCGAGGAA
CTGAATCTTCTTCGTCGTCTTGGCTGCGACCGGGCGCAGGGTTTCCTGATTTCTAAGGCAGTGTCTGCTCGT
GAGTTCGAGCGGCAGTTAAGGGAGGACGGCCCCAGCCTCCTTGTTTAA
Translation:
MSWKSYRVLVVEDQPFQREYLLNLFRERGVQYLVGAGDGAEALRCLKQDRFDLILSDLMMPGMDGIQMILQL
PYLKHRPKLALMSSSSQRMMLSASRVAQSLGLSVIDLLPKPTLPKAIGQLLEHLERCLRQKLEPETDETPHG
RTALLDALHNEQLVTWFQAKKSLHTGRIVGAEALIRWSHPQHGLLLPSCFMSDVDATGLHEALLWRVLEQTL
NAQESWRRAGYEIPVSVNLPPHLLDNQELPDRLYEYVGARGACTSSLCFELTESSVTTLSSNYYAGACRLRM
KGFGLAQDDFGQGYSSFYNLVTTPFTELKIDRSLVQGCVEDNGLNAAVISCIELGHRLNLDVVAEGVETCEE
LNLLRRLGCDRAQGFLISKAVSAREFERQLREDGPSLLV*
AnnotationID:1467GeneID:1458
AnnotatorUID: diggins
Modification Date/Time: 2006-01-31 06:06:26
Gene Name:pvrR
Confidence Code:3
GeneProduct:two component response regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01948
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM41975.1| (AE012383) response regulator [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 427

 Score =  217 bits (552), Expect = 1e-55
 Identities = 137/393 (34%), Positives = 203/393 (51%), Gaps = 9/393 (2%)

>gb|AAO55004.1| (AE016861) response regulator/EAL domain protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 429

 Score =  190 bits (483), Expect = 1e-47
 Identities = 130/412 (31%), Positives = 203/412 (49%), Gaps = 20/412 (4%)

>dbj|BAC62080.1| (AP005086) putative two-component response regulator [Vibrio
           parahaemolyticus]
          Length = 388

 Score =  169 bits (428), Expect = 3e-41
 Identities = 116/379 (30%), Positives = 182/379 (48%), Gaps = 19/379 (5%)






 
Structural Features:
cd01948, EAL, EAL domain.
CD-Length = 240 residues, 100.0% aligned
Score =  214 bits (546), Expect = 2e-56







   
Genomic Context:






   
Comment:
the ORF has been reported to be related to pathogensis.



















    ReferenceID:2919




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17087




  
Author/Investigator(s):
        





  
Title:
        CDD-search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:NCBI CD-1458.htm


    		




 
URL:

















    ReferenceID:20064




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1458
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
82164
                           gb|AAP84164.1|
                           (AY273869) PvrR [Pseudomonas aeruginosa]
                           399
                           99.99
                           99.99
                           0
                           2064.0
     

     
     
82165
                           gb|AAM15533.1|AF482691_2
                           (AF482691) putative response regulator [Pseudomonas aeruginosa]
                           399
                           99.99
                           99.99
                           0
                           2064.0
     

     






      

          
GC ORFID: 44460How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL037Glimmer Score: 

          
Start: 4588508Stop: 4587309

          
Length: 1200


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_RL037 pvrR 399 Homolog: pvrR (VieA )/ biofilm and antibiotic resistance-relat; a regulator of two component system / purR / P.aeruginosa / PA14 // vieA / X.campestris pv. campestris / ATCC 33913 / (AAM15533 / AAM41975) translation of RL037Homolog Bit Score 799.0

          
Other Homologs:  t_RL037 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCTGGAAATCCTATCGGGTGCTGGTGGTCGAAGATCAGCCGTTTCAGCGCGAATACCTGCTCAACCTG 
TTTCGCGAGCGCGGCGTGCAGTACCTGGTAGGTGCCGGCGACGGCGCGGAGGCGTTGCGCTGCCTGAAGCAG 
GACAGGTTCGACCTGATCCTCAGCGATCTGATGATGCCGGGCATGGATGGTATCCAAATGATCCTGCAACTG 
CCGTATCTCAAGCATCGTCCGAAGCTGGCGCTGATGAGCTCCTCGTCGCAGCGGATGATGCTCAGTGCCAGC 
CGGGTCGCCCAGAGTCTCGGCTTGTCGGTAATCGACCTGTTGCCCAAGCCGACTCTGCCCAAGGCCATCGGC 
CAACTTCTGGAACACCTGGAAAGATGCCTCAGGCAGAAGCTGGAGCCGGAAACCGACGAGACTCCGCATGGG 
CGCACGGCGTTGCTGGATGCCCTGCATAACGAGCAACTGGTGACCTGGTTCCAGGCTAAGAAATCCCTCCAC 
ACCGGGCGCATAGTCGGCGCCGAGGCGTTGATACGCTGGAGCCACCCGCAGCATGGCCTGTTGCTGCCCAGC 
TGTTTCATGAGTGATGTCGACGCTACCGGTCTGCACGAGGCGTTGCTCTGGCGCGTGCTCGAACAGACCCTG 
AACGCCCAGGAATCGTGGCGCAGGGCGGGTTACGAGATTCCGGTTTCGGTGAATCTGCCGCCGCACCTGCTC 
GATAACCAGGAACTTCCGGATCGACTCTATGAGTACGTCGGCGCTCGCGGGGCTTGTACCAGCTCACTATGT 
TTCGAGTTGACCGAGAGCAGTGTCACAACTCTGTCAAGTAACTACTATGCAGGTGCCTGTCGCTTGCGCATG 
AAAGGGTTCGGATTGGCCCAGGACGACTTTGGCCAGGGTTACAGCTCGTTCTATAACCTGGTCACGACGCCT 
TTCACGGAGCTGAAGATCGACCGCTCCCTAGTCCAGGGATGCGTAGAGGATAACGGCCTCAATGCAGCTGTC 
ATCAGTTGTATTGAGTTGGGTCACCGCCTGAATCTCGACGTGGTGGCCGAAGGCGTGGAGACCTGCGAGGAA 
CTGAATCTTCTTCGTCGTCTTGGCTGCGACCGGGCGCAGGGTTTCCTGATTTCTAAGGCAGTGTCTGCTCGT 
GAGTTCGAGCGGCAGTTAAGGGAGGACGGCCCCAGCCTCCTTGTTTAA