ViewGene
Locus Name:
GeneID:
Location:

GeneID:1456
TrivialName: PA14_34320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34320
PAO1 Ortholog Locus:PA2346
Sequence Length:1236
Protein Length:411
Start: 3052517
Stop: 3051282
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05734.1|AE004661_1 (AE004661) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 408/411 (99%), Positives = 411/411 (100%)
Sequence:
ATGACCGACGAAACCGCACCCAAGGATCTTCGTGATCAGGCGCCCCGGCTACTCCCGGCACGCCTCATCGAG
AACGACGCCCAGGCGTTGCAGGCCGCCCACGAGGTAGCCGGACTGGCCCGTCGCGAAGCGGCGCTACGCGAC
CGCGAACGACGCCTGCCCTGGCAGGAACTGGAACTCTTCACCCGCCTCGGCCTGGGCGGCATCGGCATTCCC
CGCGCCCATGGCGGCGCGCAGGTTTCCCACGTGACCCTGGCCGAGGTGTTCCGCGTCATCTGTGCCGCCGAC
CCGGCCCTCGGACAGATTCCGCAGAACCAGTTCGGCCTGCTCAGCGTGATCGACAACGTCGCCAGCCCGGCG
CAGAAACGCAAGCTGTTCCGTGGCATCCTCGACGGCCGCCGGCTGGCCAACGCCGGCCCGGAGCGCAATACC
CGCCATACCCTTGAGCTGAAGGCGCGGGTCCGTCGCGACGGCGACGGCTACCGGGTCAGCGGCGAGAAGTTC
TACTCCACCGGCGCCTTGTTCGCCCACTGGGTGGCGGTCAAGGCCATCGACGAGGAAGAGCGCGCGGTGATG
CTCTTCGTCGAGCGCGGCGCTCCCGGCCTGCGCATCGTCGACGACTGGTCCGGCTTCGGCCAGCGCACCACC
GCCAGCGGCACGGTACTGCTGGACGAGGTTCCGGTAGCCGGCGACATGCTGATCCACAACGGCCTGCTGGCC
GAGATCCCGAGCCTCCAGGGCGCCGTCTCGCAACTGATCCAGGCCGCCATCGACGCCGGCATCGCCCAGGCG
GCGCTGGACGACGCCCAGGCGTTCGTCCGCGAACGCAGCCGGCCCTGGATCGACGCCCAGGTCGAACGCGCC
AGCGACGAGCTTTACAGCATCGCCGAGGTCGGCCGCCTGCAAATCGAGCTGCACGCCGCCAACGCCCTGCTG
GAGAAGGCCGGCCAGGTCCTCGACGAAGTGGCCGCGCGGCCGGTGGACGCCGAGTCGGCGGCACGCGCCTCG
ATCGCCGTGGCCGAGGCCAAGGTGCTGAGCAccgagatCAGCCTGGCCGCCAGCGAGAAGCTCtTcaagcTG
GCCGgcagccGCGCCACGCtcgccaaGTTCAACCTcaaCCGGCACTGGcgCAACGCCCGCACCCACACCCTG
CACGACCCGGTACGCTGGAAGGTCCACGCGGTCGGCGACTACTACCTGAACGGCGCCCGTCCGGCGCGTCAC
TCATGGATCTGA
Translation:
MTDETAPKDLRDQAPRLLPARLIENDAQALQAAHEVAGLARREAALRDRERRLPWQELELFTRLGLGGIGIP
RAHGGAQVSHVTLAEVFRVICAADPALGQIPQNQFGLLSVIDNVASPAQKRKLFRGILDGRRLANAGPERNT
RHTLELKARVRRDGDGYRVSGEKFYSTGALFAHWVAVKAIDEEERAVMLFVERGAPGLRIVDDWSGFGQRTT
ASGTVLLDEVPVAGDMLIHNGLLAEIPSLQGAVSQLIQAAIDAGIAQAALDDAQAFVRERSRPWIDAQVERA
SDELYSIAEVGRLQIELHAANALLEKAGQVLDEVAARPVDAESAARASIAVAEAKVLSTEISLAASEKLFKL
AGSRATLAKFNLNRHWRNARTHTLHDPVRWKVHAVGDYYLNGARPARHSWI*
AnnotationID:1465GeneID:1456
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 16:04:43
Gene Name:
Confidence Code:3
GeneProduct:putative monooxygenase, DszC family
Cell Localization:()
Synonyms:PA2346
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative acyl-CoA dehydrogenase family protein
Functional Category Confidence Code:5
COGs:cd01163
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65856.1|AE016214_1 (AE016774) monooxygenase, DszC family [Pseudomonas putida KT2440]
          Length = 413

 Score =  570 bits (1468), Expect = e-162
 Identities = 281/400 (70%), Positives = 338/400 (84%)

>gb|AAO58610.1| (AE016874) acyl-CoA dehydrogenase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 440

 Score =  560 bits (1444), Expect = e-159
 Identities = 276/400 (69%), Positives = 335/400 (83%)

>gb|AAL46206.1| (AE008972) acyl-CoA dehydrogenase [Agrobacterium tumefaciens str.
           C58 (U. Washington)]
          Length = 415

 Score =  370 bits (951), Expect = e-102
 Identities = 188/391 (48%), Positives = 264/391 (67%), Gaps = 1/391 (0%)






 
Structural Features:
cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C (DszC).
CD-Length = 377 residues, 100.0% aligned
Score =  355 bits (913), Expect = 5e-99







   
Genomic Context:






   
Comment:


















    ReferenceID:2915




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20059




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32894




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1456_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1456
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2622
                           PA2346_tr
                           translation of PA2346
                           411
                           99.27
                           99.99
                           0
                           2063.0
     

     
     
82022
                           gb|AAG05734.1|AE004661_1
                           (AE004661) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           411
                           99.27
                           99.99
                           0
                           2063.0
     

     
     
82023
                           gb|AAN65856.1|AE016214_1
                           (AE016774) monooxygenase, DszC family [Pseudomonas putida KT2440]
                           414
                           68.35
                           82.36
                           4
                           1463.0
     

     
     
82024
                           gb|AAO58610.1|
                           (AE016874) acyl-CoA dehydrogenase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           444
                           62.61
                           76.12
                           37
                           1441.0
     

     
     
82025
                           gb|AAO55948.1|
                           (AE016864) acyl-CoA dehydrogenase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           413
                           60.04
                           75.54
                           12
                           1233.0
     

     






      

          
GC ORFID: 44458How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2346Glimmer Score: 

          
Start: 1901399Stop: 1902634

          
Length: 1236


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2346 translation of PA2346Homolog Bit Score 799.0

          
Other Homologs:  t_PA2347 (ORF: BLASTX 422.0), t_PA2325 (ORF: BLASTX 421.0), psyr_15may02_Scaffold2_revised_gene3829 (ORF: BLASTX 384.0), psyr_15may02_Scaffold7_revised_gene7330 (ORF: BLASTX 367.0), t_PA2346 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGACGAAACCGCACCCAAGGATCTTCGTGATCAGGCGCCCCGGCTACTCCCGGCACGCCTCATCGAG 
AACGACGCCCAGGCGTTGCAGGCCGCCCACGAGGTAGCCGGACTGGCCCGTCGCGAAGCGGCGCTACGCGAC 
CGCGAACGACGCCTGCCCTGGCAGGAACTGGAACTCTTCACCCGCCTCGGCCTGGGCGGCATCGGCATTCCC 
CGCGCCCATGGCGGCGCGCAGGTTTCCCACGTGACCCTGGCCGAGGTGTTCCGCGTCATCTGTGCCGCCGAC 
CCGGCCCTCGGACAGATTCCGCAGAACCAGTTCGGCCTGCTCAGCGTGATCGACAACGTCGCCAGCCCGGCG 
CAGAAACGCAAGCTGTTCCGTGGCATCCTCGACGGCCGCCGGCTGGCCAACGCCGGCCCGGAGCGCAATACC 
CGCCATACCCTTGAGCTGAAGGCGCGGGTCCGTCGCGACGGCGACGGCTACCGGGTCAGCGGCGAGAAGTTC 
TACTCCACCGGCGCCTTGTTCGCCCACTGGGTGGCGGTCAAGGCCATCGACGAGGAAGAGCGCGCGGTGATG 
CTCTTCGTCGAGCGCGGCGCTCCCGGCCTGCGCATCGTCGACGACTGGTCCGGCTTCGGCCAGCGCACCACC 
GCCAGCGGCACGGTACTGCTGGACGAGGTTCCGGTAGCCGGCGACATGCTGATCCACAACGGCCTGCTGGCC 
GAGATCCCGAGCCTCCAGGGCGCCGTCTCGCAACTGATCCAGGCCGCCATCGACGCCGGCATCGCCCAGGCG 
GCGCTGGACGACGCCCAGGCGTTCGTCCGCGAACGCAGCCGGCCCTGGATCGACGCCCAGGTCGAACGCGCC 
AGCGACGAGCTTTACAGCATCGCCGAGGTCGGCCGCCTGCAAATCGAGCTGCACGCCGCCAACGCCCTGCTG 
GAGAAGGCCGGCCAGGTCCTCGACGAAGTGGCCGCGCGGCCGGTGGACGCCGAGTCGGCGGCACGCGCCTCG 
ATCGCCGTGGCCGAGGCCAAGGTGCTGAGCAccgagatCAGCCTGGCCGCCAGCGAGAAGCTCtTcaagcTG 
GCCGgcagccGCGCCACGCtcgccaaGTTCAACCTcaaCCGGCACTGGcgCAACGCCCGCACCCACACCCTG 
CACGACCCGGTACGCTGGAAGGTCCACGCGGTCGGCGACTACTACCTGAACGGCGCCCGTCCGGCGCGTCAC 
TCATGGATCTGA