ViewGene
Locus Name:
GeneID:
Location:

GeneID:1454
TrivialName: PA14_45170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45170
PAO1 Ortholog Locus:PA1489
Sequence Length:1191
Protein Length:396
Start: 4027729
Stop: 4028919
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04878.1|AE004577_13 (AE004577) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 391/396 (98%), Positives = 393/396 (99%)
Sequence:
ATGCAGGAGGGCTATCGCGAATACCGCGACATCCATGCGCGCCTCAACCTGCCGCTGCTGGAAACCGGCGCC
CTGGTGGCGGCATGGAGCGACGAGGATCTGGCGCGCCTGCCGGCCATCGTCGAGCAGGCCCACGGCAACGGT
GTCGATGACGTCCGCCAGATCGGTCGCGACGAGGTCCTGGCGCTGGAGCCGCAGTTGGCCGGCAATGTGCTC
GGTGCGGTGCGGGTCCCCGGTGAGCATCTGATCGACCCCTGGTCCGCGCCGCTCGCCTATCTGCAACAGGCG
CAGGCCCATGGCGCCGAGGCCTGTTTCGACGTCGAGGTGCTGGACGGCGCCTTCGACGGCGGCGAATGGCTG
TTGCATACCCGCCGCGGCGATCTGCGCGCGCGCCAGGTAATCAACTGCGCCGGACTCTTCGGTGACCAACTG
GAACAGCGCCTGCTCGGCGCGGCGAGCTTCGCCATCCATCCGCGCAAGGGCCAGTTCGTGGTCTTCGACAAG
GCCGCCGCGGCGCTGCTGCGGCACATCCTGCTGCCGGTACCCAACGAGCGGACCAAAGGCGTGGTATTCACC
CGTACTGTCTTCGGCAACCTGCTCGCCGGCCCCACCGCCGAGGAACAGGACGACCGCGAACAGGCACGGGTC
GACAGCGACACCCTGCAGCGACTGATCGACGCCGCCGTCGAGCGGATCCCCGGCCTGCGCGGCATGCCGGTC
ACCGCCACCTACGCCGGGTTGCGGCCAGCCAGCGAAAAGAAGGAATACCGCATCCGCCAGGTCGACGGACGC
AACTGGATCAGTGTCGGCGGCATCCGTTCCACCGGTCTCACCGCGGCGCTGGGCATCGCACGCCACGTCTAT
CGTCTCTACCAGGGTGGGCGCTTCCACGAAGCGGTTCGCGAGCCGCTCTGGCCGCAGGTACCGAACCTCGCC
GAACACCTGCCGCGCGACTGGCAGCGTCCCGGCTACGACGAGATCGTCTGCCACTGCGAGATGGTCACCCGC
CGGGAAATCCTCGCCGCCCTGGAAGGCCCGCTGCCAGCCGGCGACTTCGGCGGCCTGAAGCGTCGCACCCGC
GCCTGCATGGGACGCTGCCAGGGTTTCTACTGCAACGCGCGGGTCGCCGAGCTGAGCGCCGGCCGCCTCGCC
CAGCCCCTCGCCACCGGGAGTTGCCATGAGCATCACTGA
Translation:
MQEGYREYRDIHARLNLPLLETGALVAAWSDEDLARLPAIVEQAHGNGVDDVRQIGRDEVLALEPQLAGNVL
GAVRVPGEHLIDPWSAPLAYLQQAQAHGAEACFDVEVLDGAFDGGEWLLHTRRGDLRARQVINCAGLFGDQL
EQRLLGAASFAIHPRKGQFVVFDKAAAALLRHILLPVPNERTKGVVFTRTVFGNLLAGPTAEEQDDREQARV
DSDTLQRLIDAAVERIPGLRGMPVTATYAGLRPASEKKEYRIRQVDGRNWISVGGIRSTGLTAALGIARHVY
RLYQGGRFHEAVREPLWPQVPNLAEHLPRDWQRPGYDEIVCHCEMVTRREILAALEGPLPAGDFGGLKRRTR
ACMGRCQGFYCNARVAELSAGRLAQPLATGSCHEHH*
AnnotationID:1463GeneID:1454
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 18:06:56
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:PA1489
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative dehydrogenase
Functional Category Confidence Code:5
COGs:COG0579
Secondary Functional Category(ies):energy production and conversion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0579, Predicted dehydrogenase
CD-Length = 429 residues,  84.4% aligned
Score =  270 bits (693), Expect = 1e-73
Identities = 113/362 (31%), Positives = 161/362 (44%), Gaps = 23/362 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2911




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20055




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37342




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1454_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1454
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2619
                           PA1489_tr
                           translation of PA1489
                           396
                           98.73
                           99.24
                           0
                           2063.0
     

     
     
81927
                           gb|AAG04878.1|AE004577_13
                           (AE004577) hypothetical protein PA1489 [Pseudomonas aeruginosa PAO1]
                           396
                           98.73
                           99.24
                           0
                           2063.0
     

     
     
81928
                           emb|CAB88982.1|
                           (AL939130) putative oxidoreductase. [Streptomyces coelicolor A3(2)]
                           483
                           36.02
                           46.16
                           103
                           775.0
     

     






      

          
GC ORFID: 44456How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1489Glimmer Score: 

          
Start: 926180Stop: 924990

          
Length: 1191


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1489 translation of PA1489Homolog Bit Score 799.0

          
Other Homologs:  t_PA1489 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGGAGGGCTATCGCGAATACCGCGACATCCATGCGCGCCTCAACCTGCCGCTGCTGGAAACCGGCGCC 
CTGGTGGCGGCATGGAGCGACGAGGATCTGGCGCGCCTGCCGGCCATCGTCGAGCAGGCCCACGGCAACGGT 
GTCGATGACGTCCGCCAGATCGGTCGCGACGAGGTCCTGGCGCTGGAGCCGCAGTTGGCCGGCAATGTGCTC 
GGTGCGGTGCGGGTCCCCGGTGAGCATCTGATCGACCCCTGGTCCGCGCCGCTCGCCTATCTGCAACAGGCG 
CAGGCCCATGGCGCCGAGGCCTGTTTCGACGTCGAGGTGCTGGACGGCGCCTTCGACGGCGGCGAATGGCTG 
TTGCATACCCGCCGCGGCGATCTGCGCGCGCGCCAGGTAATCAACTGCGCCGGACTCTTCGGTGACCAACTG 
GAACAGCGCCTGCTCGGCGCGGCGAGCTTCGCCATCCATCCGCGCAAGGGCCAGTTCGTGGTCTTCGACAAG 
GCCGCCGCGGCGCTGCTGCGGCACATCCTGCTGCCGGTACCCAACGAGCGGACCAAAGGCGTGGTATTCACC 
CGTACTGTCTTCGGCAACCTGCTCGCCGGCCCCACCGCCGAGGAACAGGACGACCGCGAACAGGCACGGGTC 
GACAGCGACACCCTGCAGCGACTGATCGACGCCGCCGTCGAGCGGATCCCCGGCCTGCGCGGCATGCCGGTC 
ACCGCCACCTACGCCGGGTTGCGGCCAGCCAGCGAAAAGAAGGAATACCGCATCCGCCAGGTCGACGGACGC 
AACTGGATCAGTGTCGGCGGCATCCGTTCCACCGGTCTCACCGCGGCGCTGGGCATCGCACGCCACGTCTAT 
CGTCTCTACCAGGGTGGGCGCTTCCACGAAGCGGTTCGCGAGCCGCTCTGGCCGCAGGTACCGAACCTCGCC 
GAACACCTGCCGCGCGACTGGCAGCGTCCCGGCTACGACGAGATCGTCTGCCACTGCGAGATGGTCACCCGC 
CGGGAAATCCTCGCCGCCCTGGAAGGCCCGCTGCCAGCCGGCGACTTCGGCGGCCTGAAGCGTCGCACCCGC 
GCCTGCATGGGACGCTGCCAGGGTTTCTACTGCAACGCGCGGGTCGCCGAGCTGAGCGCCGGCCGCCTCGCC 
CAGCCCCTCGCCACCGGGAGTTGCCATGAGCATCACTGA