ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1453

TrivialName: PA14_45130

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_45130

PAO1 Ortholog Locus: PA1491

Sequence Length: 1236

Protein Length: 411

Start: 4026202

Stop: 4024967

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04880.1|AE004578_2 (AE004578) probable transporter [Pseudomonas aeruginosa PAO1] Identities = 410/411 (99%), Positives = 410/411 (99%)

Sequence:

ATGGCCGAGTTCGGAAACTATGTGATTTACCTGATCATGCTGGGTGCGGTACTTGGCGCGCTGGCTTCCATC
CTGCGCCCGGAAAGCGGTCTGGGCCGCGAGTTCGTCAACGGCATCCACGCCATCGGTCCGGTGTTCCTCGCC
CAGGCCGGCATCATGGTAGCCATTCCCTATCTGTCGAAGGCGATTTCCCATGCCCTCGGCCCGTTCTTCCAG
ACCCTCGGTTCCGACGTATCCATCGCCGCGCTGTCGATCATCGCAGTGGACATGGGCGGCTACCAGTTGGCC
GATGCCCTGACCGCCAACCGCGACATGTGGATTACCGCCATGCTGGTGGGCTACACCTCCGGCGCGACCATC
GTCTACCTGATCCCGGTCGGCCTGACCATGCTCGAGCGCAAGGACCACAAGTACCTGGCGCTGGGGGCGATG
GCCGGGTTGATCAGCATTCCGTTCGCGGTGCTGGCGGCGTTGCTGCTGATTACCCTCAACCACATCCCGGTG
CGCGAACTGGTATCGACCGGTTCGCCGGCCCTGCACTACCTGTCGCTGGACTTCCTCGGCATGCTTCGGCTG
CTGGCGCCACTGTTCGTCTTCTGCTTCCTGCTGGCCGCCGGCCTGAAGTACCGGGCGACGGCGATGGTCACC
GGGTTCCTGGTATTCGGCAAGGTGATGGACGCGTTCATCAAGATGGCCCTGGCGCTTTCCATCGTCCAGCAC
TTCACCGGAGTCTTCACCAAGGTCTTCGGCGGCTGGGGCTTCGACCCGATGTTCGCCGACGAGAAAGAGTTG
TTCCGCGCCATCGAGATCGCTGGCTACATCGGCATCATGCTGGCCGGGACCTTCCCCATCTGCTACCTGTTC
CAGCGCTACTGCAAGCGCCCGATGGCGGTCCTCGGCCGTTACCTGGGGCTGTCCCAGCCGGGCGCCACCGCC
TTTGTCATGGTGCTGGCGAACATCATCGCCACCTACCACCTGTTCAAATACATGAATGCTCGCGACAAGGTG
CTTTGCGTGGCCCTGGGCGTCTGCGCCCAGGCCACCATCGGCGATCACCTGGCATTCACCGCCAACTTCCAG
CCGACGCTGATCCTGCCGATCCTGCTCGGCAAATTGTTCGGCGGCCTGCTGGCGGTATTCATCGCCATCCGC
ATCTCGGTGCCTGCCGCCGAGCGCTATGCCCGGCAGGAGCAGGAGCATGACGAGGCGGAAAAAAGCGCCCTG
CACGCAGCCTGA

Translation:

MAEFGNYVIYLIMLGAVLGALASILRPESGLGREFVNGIHAIGPVFLAQAGIMVAIPYLSKAISHALGPFFQ
TLGSDVSIAALSIIAVDMGGYQLADALTANRDMWITAMLVGYTSGATIVYLIPVGLTMLERKDHKYLALGAM
AGLISIPFAVLAALLLITLNHIPVRELVSTGSPALHYLSLDFLGMLRLLAPLFVFCFLLAAGLKYRATAMVT
GFLVFGKVMDAFIKMALALSIVQHFTGVFTKVFGGWGFDPMFADEKELFRAIEIAGYIGIMLAGTFPICYLF
QRYCKRPMAVLGRYLGLSQPGATAFVMVLANIIATYHLFKYMNARDKVLCVALGVCAQATIGDHLAFTANFQ
PTLILPILLGKLFGGLLAVFIAIRISVPAAERYARQEQEHDEAEKSALHAA*

AnnotationID:1462 GeneID:1453

AnnotatorUID: diggins

Modification Date/Time: 2005-02-24 18:06:37

Gene Name:

Confidence Code: 3

GeneProduct: putative transporter

Cell Localization: ()

Synonyms: PA1491

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (27) Transport of small molecules

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: pfam04346

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

pfam04346, EutH, Ethanolamine utilisation protein, EutH.
CD-Length = 364 residues, 100.0% aligned
Score =  491 bits (1265), Expect = 7e-140
Identities = 284/377 (75%), Positives = 312/377 (82%), Gaps = 14/377 (3%)

Genomic Context:

Comment:

ReferenceID:2909

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20053

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37343

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1453_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1453

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2618 PA1491_tr translation of PA1491 411 99.75 99.75 0 2064.0

81926 gb|AAG04880.1|AE004578_2 (AE004578) probable transporter [Pseudomonas aeruginosa PAO1] 411 99.75 99.75 0 2064.0

GC ORFID: `44455`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1491`	Glimmer Score:
Start: `927707`	Stop: `928942`
Length: `1236`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1491 translation of PA1491`	Homolog Bit Score `799.0`
Other Homologs: `t_PA1491 (ORF: GLIMMER)`
GC ORF Sequence
ATGGCCGAGTTCGGAAACTATGTGATTTACCTGATCATGCTGGGTGCGGTACTTGGCGCGCTGGCTTCCATC CTGCGCCCGGAAAGCGGTCTGGGCCGCGAGTTCGTCAACGGCATCCACGCCATCGGTCCGGTGTTCCTCGCC CAGGCCGGCATCATGGTAGCCATTCCCTATCTGTCGAAGGCGATTTCCCATGCCCTCGGCCCGTTCTTCCAG ACCCTCGGTTCCGACGTATCCATCGCCGCGCTGTCGATCATCGCAGTGGACATGGGCGGCTACCAGTTGGCC GATGCCCTGACCGCCAACCGCGACATGTGGATTACCGCCATGCTGGTGGGCTACACCTCCGGCGCGACCATC GTCTACCTGATCCCGGTCGGCCTGACCATGCTCGAGCGCAAGGACCACAAGTACCTGGCGCTGGGGGCGATG GCCGGGTTGATCAGCATTCCGTTCGCGGTGCTGGCGGCGTTGCTGCTGATTACCCTCAACCACATCCCGGTG CGCGAACTGGTATCGACCGGTTCGCCGGCCCTGCACTACCTGTCGCTGGACTTCCTCGGCATGCTTCGGCTG CTGGCGCCACTGTTCGTCTTCTGCTTCCTGCTGGCCGCCGGCCTGAAGTACCGGGCGACGGCGATGGTCACC GGGTTCCTGGTATTCGGCAAGGTGATGGACGCGTTCATCAAGATGGCCCTGGCGCTTTCCATCGTCCAGCAC TTCACCGGAGTCTTCACCAAGGTCTTCGGCGGCTGGGGCTTCGACCCGATGTTCGCCGACGAGAAAGAGTTG TTCCGCGCCATCGAGATCGCTGGCTACATCGGCATCATGCTGGCCGGGACCTTCCCCATCTGCTACCTGTTC CAGCGCTACTGCAAGCGCCCGATGGCGGTCCTCGGCCGTTACCTGGGGCTGTCCCAGCCGGGCGCCACCGCC TTTGTCATGGTGCTGGCGAACATCATCGCCACCTACCACCTGTTCAAATACATGAATGCTCGCGACAAGGTG CTTTGCGTGGCCCTGGGCGTCTGCGCCCAGGCCACCATCGGCGATCACCTGGCATTCACCGCCAACTTCCAG CCGACGCTGATCCTGCCGATCCTGCTCGGCAAATTGTTCGGCGGCCTGCTGGCGGTATTCATCGCCATCCGC ATCTCGGTGCCTGCCGCCGAGCGCTATGCCCGGCAGGAGCAGGAGCATGACGAGGCGGAAAAAAGCGCCCTG CACGCAGCCTGA