ViewGene
Locus Name:
GeneID:
Location:

GeneID:1452
TrivialName: PA14_11990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11990
PAO1 Ortholog Locus:PA4008
Sequence Length:1224
Protein Length:407
Start: 1037840
Stop: 1036617
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07395.1|AE004818_1 (AE004818) probable hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 399/407 (98%), Positives = 403/407 (99%)
Sequence:
ATGCGCTACCGTACCGACTACAGCGCACAGTCGCTGAGCAGCGAACCGGATATCCTCTTTCTAGACGGCTGG
CAACTGCGCTTCCAGGCCTTCGCCGCCCGCGCCGACGACCCGCGCCCGCCGGTGCTCCTGCTGGGCGGCGCC
TTCCAGAGCTTCCGCTCGTTCGCCGGCGAGGTCAGCGAACTGCTCGCCGAGCACCCGGTGATCCTGCTCGAC
CTGCCGAGCCAGGGCGGCAACCTGCAACTGGCGGCGGAACTGAGCCTGGAAGACCTCGCCGACCTGATCGCG
GCCTTCGCCGAACGGCTCGGCCTGCCGCCGTTGATGCCCATCGGCCTGTCCTACGGCTCGGCCCTGGCCGCG
CTGTTCGCCGCCCGCCATCCGCGCCGCTGCGCGCGCCTGCTACTGGCCGGCATCACCGCATTCGGCCGCCCC
GGTGCGCGGCTGCTGCTGGAAGAAGCGCTGGCCCGGCTCGACGAGGGCGACCAGAGCGCCTTCGCCCACGGC
GTACTGACCGGCCTGATCAACCCGCTACAGCTGGAACGTACCGGCGTCTCCCCGGTATTTCGCAAGGCCATG
CTGCGCCAGTTGCAACGCCTGACCGCGGCGGAGATCGAACGCTACCGGCAGAATAGCCGGCGCCTGCTGGCC
TTCGGCGGCTTCGAGCGGCACCCGACCTGCCCGACCCTGGTGCTCGCCGGCGAGTACGACCATTTCACCCAG
CCCTGGGAACATGCGGTGTTCGCCCATGCCTGCGGGAACGCCGAGTTCGCCCTGATCCACGACGCCGACCAT
CTTGCCCAGTTCGAACGACGCGAGGCCTGCGCCCGGCTCTACGGCCCGTTCCTGCGCGGCGAGGCGCTGCCG
GAGCGCGCCGAGGGCAGCACGCGGATCCCGCGCACGCGCCTGCTCGGCCTGGAGCGACGCTTCGAGGTCCGC
CATCGGCCAGCCCAGGGGCACGCTCGGCTGGAACATCCGCAGCTCGGCGTCTATGCGGCGGAACTGGTGGAA
CTCGGCTATTTCGGCGGGCGGCTGCACGCCGAGCTACCCGAATCCCGCCCGCAACGCGGCTGGCGGTTGTGC
TACGACGGCCTGGCGGACTTGGACATCCTGCCCCTGCGTTCGACCGCCGGCGGCTTCGCCTTCATCTTCCCG
CACTCCGATCCGGCGGCCAGCGCCGGACTGGCCGACCTCCTCGCCGCCTGGCAGCGAGCGGAGGTCGCCTGA
Translation:
MRYRTDYSAQSLSSEPDILFLDGWQLRFQAFAARADDPRPPVLLLGGAFQSFRSFAGEVSELLAEHPVILLD
LPSQGGNLQLAAELSLEDLADLIAAFAERLGLPPLMPIGLSYGSALAALFAARHPRRCARLLLAGITAFGRP
GARLLLEEALARLDEGDQSAFAHGVLTGLINPLQLERTGVSPVFRKAMLRQLQRLTAAEIERYRQNSRRLLA
FGGFERHPTCPTLVLAGEYDHFTQPWEHAVFAHACGNAEFALIHDADHLAQFERREACARLYGPFLRGEALP
ERAEGSTRIPRTRLLGLERRFEVRHRPAQGHARLEHPQLGVYAAELVELGYFGGRLHAELPESRPQRGWRLC
YDGLADLDILPLRSTAGGFAFIFPHSDPAASAGLADLLAAWQRAEVA*
AnnotationID:1461GeneID:1452
AnnotatorUID: urbach
Modification Date/Time: 2004-09-14 11:11:22
Gene Name:
Confidence Code:3
GeneProduct:possible hydrolase
Cell Localization:()
Synonyms:PA4008
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00561
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|23022 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic
domain is found in a very wide range of enzymes
Length = 224
Score = 75.2 bits (184), Expect = 3e-14
Identities = 56/226 (24%), Positives = 79/226 (34%), Gaps = 13/226 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2907




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20051




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1452
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2617
                           PA4008_tr
                           translation of PA4008
                           407
                           98.03
                           99.01
                           0
                           2067.0
     

     
     
81925
                           gb|AAG07395.1|AE004818_1
                           (AE004818) probable hydrolase [Pseudomonas aeruginosa PAO1]
                           407
                           98.03
                           99.01
                           0
                           2067.0
     

     






      

          
GC ORFID: 44454How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4008Glimmer Score: 

          
Start: 3916098Stop: 3917321

          
Length: 1224


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4008 translation of PA4008Homolog Bit Score 800.0

          
Other Homologs:  t_PA4008 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCTACCGTACCGACTACAGCGCACAGTCGCTGAGCAGCGAACCGGATATCCTCTTTCTAGACGGCTGG 
CAACTGCGCTTCCAGGCCTTCGCCGCCCGCGCCGACGACCCGCGCCCGCCGGTGCTCCTGCTGGGCGGCGCC 
TTCCAGAGCTTCCGCTCGTTCGCCGGCGAGGTCAGCGAACTGCTCGCCGAGCACCCGGTGATCCTGCTCGAC 
CTGCCGAGCCAGGGCGGCAACCTGCAACTGGCGGCGGAACTGAGCCTGGAAGACCTCGCCGACCTGATCGCG 
GCCTTCGCCGAACGGCTCGGCCTGCCGCCGTTGATGCCCATCGGCCTGTCCTACGGCTCGGCCCTGGCCGCG 
CTGTTCGCCGCCCGCCATCCGCGCCGCTGCGCGCGCCTGCTACTGGCCGGCATCACCGCATTCGGCCGCCCC 
GGTGCGCGGCTGCTGCTGGAAGAAGCGCTGGCCCGGCTCGACGAGGGCGACCAGAGCGCCTTCGCCCACGGC 
GTACTGACCGGCCTGATCAACCCGCTACAGCTGGAACGTACCGGCGTCTCCCCGGTATTTCGCAAGGCCATG 
CTGCGCCAGTTGCAACGCCTGACCGCGGCGGAGATCGAACGCTACCGGCAGAATAGCCGGCGCCTGCTGGCC 
TTCGGCGGCTTCGAGCGGCACCCGACCTGCCCGACCCTGGTGCTCGCCGGCGAGTACGACCATTTCACCCAG 
CCCTGGGAACATGCGGTGTTCGCCCATGCCTGCGGGAACGCCGAGTTCGCCCTGATCCACGACGCCGACCAT 
CTTGCCCAGTTCGAACGACGCGAGGCCTGCGCCCGGCTCTACGGCCCGTTCCTGCGCGGCGAGGCGCTGCCG 
GAGCGCGCCGAGGGCAGCACGCGGATCCCGCGCACGCGCCTGCTCGGCCTGGAGCGACGCTTCGAGGTCCGC 
CATCGGCCAGCCCAGGGGCACGCTCGGCTGGAACATCCGCAGCTCGGCGTCTATGCGGCGGAACTGGTGGAA 
CTCGGCTATTTCGGCGGGCGGCTGCACGCCGAGCTACCCGAATCCCGCCCGCAACGCGGCTGGCGGTTGTGC 
TACGACGGCCTGGCGGACTTGGACATCCTGCCCCTGCGTTCGACCGCCGGCGGCTTCGCCTTCATCTTCCCG 
CACTCCGATCCGGCGGCCAGCGCCGGACTGGCCGACCTCCTCGCCGCCTGGCAGCGAGCGGAGGTCGCCTGA