ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1450

TrivialName: PA14_41740

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_41740

PAO1 Ortholog Locus: PA1765

Sequence Length: 1188

Protein Length: 395

Start: 3726219

Stop: 3725032

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05154.1|AE004602_5 (AE004602) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 393/395 (99%), Positives = 393/395 (99%)

Sequence:

ATGCGCGCATCCATCGTACTTTGCGTCTTCTCCCTGGCGCTGCCGGCATCTTCGCCGGGCTGGGCCTCCGGC
GGGCGCTACCTGACCTGGGTGGACGACAATGGCGGGGTGCACAACACCTTCGTCGACGGCCAGTTCGACCGC
CAGCAGCGCCAGGCACGGCAGCGCATCGGCCAGAGCGACCAGGCGCGGGTGCTGAACAAGGCGGACAACGCC
ACGCAGTGGCCGGGGAACAGCAGCGGAGGGGAGAGCAAGCGTCGCTACTACACCTGGATCGATGCCAACGGC
AACGTGCAGAACAGCTTCTATGCCGGCGCCCAGGTCGCCGGCCAGCGCGCCGACTACGTCCTGCCCAACGGC
GAGCACTCCGCCGAATACATCGATGCCGAGGCCTTCGAGGGCAAGGGTTTCGTTCGCAGCGAGAACGGCAGT
CCCTACTACACCTGGGTGGACGAGAAGGGCCGCATGCACAACTCGCAGATCCCGCCCGAGGAGCGCGCGGCG
CGCTTCAAGCGGGAGGCCGCGCCTTCGTCGCAGATCGCCTTCACCGAGGGCCGGCAGATCGAGTTCAAGCAA
CGTCCGACGGCGTTGCCCGGCCTGGATGGCGCCGGCCAGCAGAGCGATGCGCTGAAGGCTTTGCTCAAGGGC
ACCGAGATGACCATCGACGATCTCTACCAGGACCTGCAACGGCGCTGCTGCGAGCAGATCGCCGAGAGCGAT
TTCACCGAACTGGATGCCGACGAGCCGCGCTACGAGGAGTTGAACCGCTTCTCGCCGAGCTTCGACTTTCCC
ATGGGCAGGAGCTTCTACGCGGCGATCCGGCTGCCGCGCTCCCAGGGTGTCTACGGCCTGCGCATCCGCAGT
TTCGCCAACCGCCAGGTGGTCTACCCGTCGCTGCTGTTCCTCGACGAGCACAAGCGGCCGACCCGGCTGGTC
AGCGACGCGGTGTACAAGCTGAACCCGGAAACCTGGTATCGCTACGCTTTCATCGAGGGTACGGTGCCGGTG
CGGGCCAATCGCGGCGAGCGCTACGTGCTGCTGCTGACCACCGACGAGGACCGCTCGCTGCAAACCCTCGAC
AACAAGCCGTTCAAGCGTCCGCTACAGGGCCTGGCGGTGAACGAGGCGGGCATGCAGGTGCATGAGCACGCC
CGGCAGGGCGGCTTCGAGCTGGCCGTGGTGCGTTGA

Translation:

MRASIVLCVFSLALPASSPGWASGGRYLTWVDDNGGVHNTFVDGQFDRQQRQARQRIGQSDQARVLNKADNA
TQWPGNSSGGESKRRYYTWIDANGNVQNSFYAGAQVAGQRADYVLPNGEHSAEYIDAEAFEGKGFVRSENGS
PYYTWVDEKGRMHNSQIPPEERAARFKREAAPSSQIAFTEGRQIEFKQRPTALPGLDGAGQQSDALKALLKG
TEMTIDDLYQDLQRRCCEQIAESDFTELDADEPRYEELNRFSPSFDFPMGRSFYAAIRLPRSQGVYGLRIRS
FANRQVVYPSLLFLDEHKRPTRLVSDAVYKLNPETWYRYAFIEGTVPVRANRGERYVLLLTTDEDRSLQTLD
NKPFKRPLQGLAVNEAGMQVHEHARQGGFELAVVR*

AnnotationID:1459 GeneID:1450

AnnotatorUID: diggins

Modification Date/Time: 2005-03-01 08:08:42

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA1765

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:2903

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20047

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1450

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2614 PA1765_tr translation of PA1765 395 99.49 99.49 0 2067.0

81904 gb|AAG05154.1|AE004602_5 (AE004602) hypothetical protein PA1765 [Pseudomonas aeruginosa PAO1] 395 99.49 99.49 0 2067.0

GC ORFID: `44452`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1765`	Glimmer Score:
Start: `1227690`	Stop: `1228877`
Length: `1188`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1765 translation of PA1765`	Homolog Bit Score `800.0`
Other Homologs: `t_PA1765 (ORF: GLIMMER)`
GC ORF Sequence
ATGCGCGCATCCATCGTACTTTGCGTCTTCTCCCTGGCGCTGCCGGCATCTTCGCCGGGCTGGGCCTCCGGC GGGCGCTACCTGACCTGGGTGGACGACAATGGCGGGGTGCACAACACCTTCGTCGACGGCCAGTTCGACCGC CAGCAGCGCCAGGCACGGCAGCGCATCGGCCAGAGCGACCAGGCGCGGGTGCTGAACAAGGCGGACAACGCC ACGCAGTGGCCGGGGAACAGCAGCGGAGGGGAGAGCAAGCGTCGCTACTACACCTGGATCGATGCCAACGGC AACGTGCAGAACAGCTTCTATGCCGGCGCCCAGGTCGCCGGCCAGCGCGCCGACTACGTCCTGCCCAACGGC GAGCACTCCGCCGAATACATCGATGCCGAGGCCTTCGAGGGCAAGGGTTTCGTTCGCAGCGAGAACGGCAGT CCCTACTACACCTGGGTGGACGAGAAGGGCCGCATGCACAACTCGCAGATCCCGCCCGAGGAGCGCGCGGCG CGCTTCAAGCGGGAGGCCGCGCCTTCGTCGCAGATCGCCTTCACCGAGGGCCGGCAGATCGAGTTCAAGCAA CGTCCGACGGCGTTGCCCGGCCTGGATGGCGCCGGCCAGCAGAGCGATGCGCTGAAGGCTTTGCTCAAGGGC ACCGAGATGACCATCGACGATCTCTACCAGGACCTGCAACGGCGCTGCTGCGAGCAGATCGCCGAGAGCGAT TTCACCGAACTGGATGCCGACGAGCCGCGCTACGAGGAGTTGAACCGCTTCTCGCCGAGCTTCGACTTTCCC ATGGGCAGGAGCTTCTACGCGGCGATCCGGCTGCCGCGCTCCCAGGGTGTCTACGGCCTGCGCATCCGCAGT TTCGCCAACCGCCAGGTGGTCTACCCGTCGCTGCTGTTCCTCGACGAGCACAAGCGGCCGACCCGGCTGGTC AGCGACGCGGTGTACAAGCTGAACCCGGAAACCTGGTATCGCTACGCTTTCATCGAGGGTACGGTGCCGGTG CGGGCCAATCGCGGCGAGCGCTACGTGCTGCTGCTGACCACCGACGAGGACCGCTCGCTGCAAACCCTCGAC AACAAGCCGTTCAAGCGTCCGCTACAGGGCCTGGCGGTGAACGAGGCGGGCATGCAGGTGCATGAGCACGCC CGGCAGGGCGGCTTCGAGCTGGCCGTGGTGCGTTGA