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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG05526.1|AE004641_5 (AE004641) probable ATP-dependent DNA ligase [Pseudomonas aeruginosa PAO1]
Identities = 837/840 (99%), Positives = 837/840 (99%)
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Sequence:
ATGCCCAGCAGCAAGCCGCTCGCCGAGTACGCCCGCAAGCGCGATTTCCGCCAGACCCCGGAGCCCAGCGGC
CGCAAGCCTCGCAAGGACAGCACCGGTCTGCTCCGCTATTGCGTCCAGAAGCACGACGCCAGCCGCCTGCAC
TACGACTTCCGCCTGGAGCTGGATGGCACCTTGAAGAGCTGGGCGGTGCCCAAGGGGCCGTGCCTCGACCCG
GCGGTGAAGCGGCTCGCGGTGCAGGTTGAGGACCATCCGCTGGACTATGCCGATTTCGAAGGCAGCATCCCC
CAGGGGCACTACGGCGCCGGCGATGTCATCGTCTGGGACCGAGGCGCCTGGACGCCTCTGGACGATCCGCGC
GAGGGCCTGGAAAAGGGCCATCTCAGCTTCGCCCTGGATGGCGAGAAACTCTCCGGGCGTTGGCACCTGATC
CGCACCAACCTGCGCGGCAAGCAGCCCCAGTGGTTCCTGGTCAAGGCCAAGGACGGCGAGGCGCGCAGCCTG
GATTGCTTCGACGTGCTGAAGGAGCGTCCCGACAGCGTGCTCAGCGAGCGTACGCTGCTGCCCCGCCATGGC
GAAGCCGCCACGCCCGCGGCCAGGCCGGCGCGACGCGGCAAGAGCGGGGGGAAGACGCCGATGCCCGAATGG
ATCGCCCCCGAGCTGGCCAGCCTGGTCGAGCAGCCTCCGCGAGGGGAGTGGGCCTACGAACTCAAGCTGGAC
GGCTATCGGCTGATGAGCCGCATCGAAGACGGCCACGTGCGCCTGCTGACCCGCAACGGCCATGACTGGACC
GAACGCCTGCCGCACCTGGAGAAGGCATTGGCCGGGCTCGGTCTGCAGCGCAGTTGGCTGGACGGCGAACTG
GTGGTCCTCGACGAGGAGGGTCGACCGGACTTCCAGGCCCTGCAGAACGCCTTCGAGGAAGGTCGCGGCGAG
AACATCCTGTACGTCCTCTTCGACCTGCCGTACCACGAAGGCGAGGATCTGCGCGATGTCGCCCTGGAGGAG
CGCCGCGCGCGCCTGGAGGCGCTGCTGGAAGGGCGCGACGAAGACCCGCTGCGGTTCTCCGCGACGCTCGCG
GAAGACCCCCGCGACCTGCTGGCCAGCGCCTGCAAGCTCGGTCTCGAAGGCGTGATCGGCAAGCGTCTGGGC
AGCGCCTACCGTTCGCGCCGCAGCAACGACTGGATCAAGCTGAAGTGCCAGTTGCGCCAGGAGTTCGTGATC
GTCGGCTATACCGAGCCGAAGGGCTCTCGCCGGCATATCGGCGCCTTGCTGCTCGGCCTCTACAGCCCTGAC
GAGGAGCGCCGGCTGCGCTATGCCGGCAAGGTCGGCAGCGGCTTCACCGCGGCCAGCCTGAAGAAGGTCCGT
GAGCGCCTGGAACCCCTCGCGGTCCGCTCCAGCCCATTGGCGAAGGTGCCGCCGGCGCGCGAGACcGGGTCG
GTGCAGTGGGTGCGCCCGCAACAGCTGTGCGAGGTTTCCTATGCGCAGATGACCCGTGGCGGGATCATCCGC
CAGGCAGTGTTCCACGGCTTGCGCGAAGACAAGCCGGCGCGCGAGGTGACCGGCGAGCGTCCCGCCGGCCCG
CCGCCGCTGCGCGGCGCGCGCAAGGCCGGCGCCGGTGCGTCGCGGGCGGCCACCGCCGGCGTGCGCATCAGC
CATCCGCAGCGGCTGATCGACCCGTCGATCCAGGCCAGCAAGCTGGAACTCGCCGAGTTCCATGCGCGCTAC
GCCGACCTGCTCCTGCGCGACCTGCGCGAGCGCCCGGTGTCGCTGGTGCGCGGCCCCGACGGAATCGGCGGC
GAACTGTTCTTCCAGAAGCACGCGGCGCGCCTGAAGATCCCCGGCATCGTCCAGCTCGACCCGGCGCTCGAT
CCCGGTCATCCGCCGCTGTTGCAGATCCGCAGCGCCGAGGCGCTGGTCGGCGCGGTGCAGATGGGCAGCATC
GAATTCCATACCTGGAACGCCAGCCTGGCCAACCTGGAGCGGCCCGACCGTTTCGTCCTCGACCTCGACCCG
GACCCGGCGCTGCCGTGGAAGCGCATGCTCGAAGCGACCCAGCTGAGCCTGACGTTGCTCGACGAGCTGGGC
CTGCGCGCCTTCCTCAAGACCAGCGGCGGCAAGGGCATGCACCTGCTGGTGCCGCTGGAGCGCCGGCATGGC
TGGGACGAGGTCAAGGATTTCGCCCAGGCCATCTCCCAGCACTTGGCGCGCCTGATGCCGGAGCGTTTCTCG
GCGGTTTCCGGGCCGCGCAACCGGGTCGGCAAGATCTTCGTCGACTACCTGCGCAACAGCCGCGGCGCCAGC
ACCGTGGCCGCCTACTCGGTGCGCGCCCGCGAAGGGTTGCCGGTGTCGGTACCGGTGTTCCGCGAGGAACTC
GACTCGCTGCAGGGCGCCAACCAATGGAACCTGCGCAGTCTGCCGCAGCGCCTCGACGAACTCGCCGGCGAC
GATCCCTGGGCCGACTACGCCGGCACCCGCCAGCGCATCAGCGCGGCCATGCGGCGCCAGCTCGGGCGCGGC
TGA |
Translation:
MPSSKPLAEYARKRDFRQTPEPSGRKPRKDSTGLLRYCVQKHDASRLHYDFRLELDGTLKSWAVPKGPCLDP
AVKRLAVQVEDHPLDYADFEGSIPQGHYGAGDVIVWDRGAWTPLDDPREGLEKGHLSFALDGEKLSGRWHLI
RTNLRGKQPQWFLVKAKDGEARSLDCFDVLKERPDSVLSERTLLPRHGEAATPAARPARRGKSGGKTPMPEW
IAPELASLVEQPPRGEWAYELKLDGYRLMSRIEDGHVRLLTRNGHDWTERLPHLEKALAGLGLQRSWLDGEL
VVLDEEGRPDFQALQNAFEEGRGENILYVLFDLPYHEGEDLRDVALEERRARLEALLEGRDEDPLRFSATLA
EDPRDLLASACKLGLEGVIGKRLGSAYRSRRSNDWIKLKCQLRQEFVIVGYTEPKGSRRHIGALLLGLYSPD
EERRLRYAGKVGSGFTAASLKKVRERLEPLAVRSSPLAKVPPARETGSVQWVRPQQLCEVSYAQMTRGGIIR
QAVFHGLREDKPAREVTGERPAGPPPLRGARKAGAGASRAATAGVRISHPQRLIDPSIQASKLELAEFHARY
ADLLLRDLRERPVSLVRGPDGIGGELFFQKHAARLKIPGIVQLDPALDPGHPPLLQIRSAEALVGAVQMGSI
EFHTWNASLANLERPDRFVLDLDPDPALPWKRMLEATQLSLTLLDELGLRAFLKTSGGKGMHLLVPLERRHG
WDEVKDFAQAISQHLARLMPERFSAVSGPRNRVGKIFVDYLRNSRGASTVAAYSVRAREGLPVSVPVFREEL
DSLQGANQWNLRSLPQRLDELAGDDPWADYAGTRQRISAAMRRQLGRG* |
AnnotationID:155 | GeneID:145 |
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Modification Date/Time: |
2005-03-03 11:11:21 |
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GeneProduct: | putative ATP-dependent DNA ligase |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (11) DNA replication, recombination, modification and repair |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAN68867.1|AE016518_13 (AE016786) DNA ligase, ATP-dependent, putative [Pseudomonas putida
KT2440]
Length = 833
Score = 946 bits (2445), Expect = 0.0
Identities = 478/837 (57%), Positives = 598/837 (71%), Gaps = 9/837 (1%)
>emb|CAE33337.1| (BX640445) Putative ATP-dependent DNA-ligase [Bordetella
bronchiseptica]
Length = 820
Score = 727 bits (1876), Expect = 0.0
Identities = 412/854 (48%), Positives = 540/854 (63%), Gaps = 54/854 (6%)
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Structural Features: | COG3285, COG3285, Predicted eukaryotic-type DNA primase
[DNA replication, recombination, and repair]
CD-Length = 299 residues, 100.0% aligned
Score = 344 bits (884), Expect = 2e-95
Identities = 136/302 (45%), Positives = 182/302 (60%), Gaps = 5/302 (1%)
COG1793, CDC9, ATP-dependent DNA ligase [DNA replication, recombination, and repair]
CD-Length = 444 residues, 97.5% aligned
Score = 303 bits (776), Expect = 8e-83
Identities = 176/473 (37%), Positives = 230/473 (48%), Gaps = 59/473 (12%)
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