ViewGene

Locus Name:
GeneID:
Location:

GeneID:145
TrivialName: PA14_36910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36910
PAO1 Ortholog Locus:PA2138
Sequence Length:2523
Protein Length:840
Start: 3290309
Stop: 3287787
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05526.1|AE004641_5 (AE004641) probable ATP-dependent DNA ligase [Pseudomonas aeruginosa PAO1]
Identities = 837/840 (99%), Positives = 837/840 (99%)
Sequence:
ATGCCCAGCAGCAAGCCGCTCGCCGAGTACGCCCGCAAGCGCGATTTCCGCCAGACCCCGGAGCCCAGCGGC
CGCAAGCCTCGCAAGGACAGCACCGGTCTGCTCCGCTATTGCGTCCAGAAGCACGACGCCAGCCGCCTGCAC
TACGACTTCCGCCTGGAGCTGGATGGCACCTTGAAGAGCTGGGCGGTGCCCAAGGGGCCGTGCCTCGACCCG
GCGGTGAAGCGGCTCGCGGTGCAGGTTGAGGACCATCCGCTGGACTATGCCGATTTCGAAGGCAGCATCCCC
CAGGGGCACTACGGCGCCGGCGATGTCATCGTCTGGGACCGAGGCGCCTGGACGCCTCTGGACGATCCGCGC
GAGGGCCTGGAAAAGGGCCATCTCAGCTTCGCCCTGGATGGCGAGAAACTCTCCGGGCGTTGGCACCTGATC
CGCACCAACCTGCGCGGCAAGCAGCCCCAGTGGTTCCTGGTCAAGGCCAAGGACGGCGAGGCGCGCAGCCTG
GATTGCTTCGACGTGCTGAAGGAGCGTCCCGACAGCGTGCTCAGCGAGCGTACGCTGCTGCCCCGCCATGGC
GAAGCCGCCACGCCCGCGGCCAGGCCGGCGCGACGCGGCAAGAGCGGGGGGAAGACGCCGATGCCCGAATGG
ATCGCCCCCGAGCTGGCCAGCCTGGTCGAGCAGCCTCCGCGAGGGGAGTGGGCCTACGAACTCAAGCTGGAC
GGCTATCGGCTGATGAGCCGCATCGAAGACGGCCACGTGCGCCTGCTGACCCGCAACGGCCATGACTGGACC
GAACGCCTGCCGCACCTGGAGAAGGCATTGGCCGGGCTCGGTCTGCAGCGCAGTTGGCTGGACGGCGAACTG
GTGGTCCTCGACGAGGAGGGTCGACCGGACTTCCAGGCCCTGCAGAACGCCTTCGAGGAAGGTCGCGGCGAG
AACATCCTGTACGTCCTCTTCGACCTGCCGTACCACGAAGGCGAGGATCTGCGCGATGTCGCCCTGGAGGAG
CGCCGCGCGCGCCTGGAGGCGCTGCTGGAAGGGCGCGACGAAGACCCGCTGCGGTTCTCCGCGACGCTCGCG
GAAGACCCCCGCGACCTGCTGGCCAGCGCCTGCAAGCTCGGTCTCGAAGGCGTGATCGGCAAGCGTCTGGGC
AGCGCCTACCGTTCGCGCCGCAGCAACGACTGGATCAAGCTGAAGTGCCAGTTGCGCCAGGAGTTCGTGATC
GTCGGCTATACCGAGCCGAAGGGCTCTCGCCGGCATATCGGCGCCTTGCTGCTCGGCCTCTACAGCCCTGAC
GAGGAGCGCCGGCTGCGCTATGCCGGCAAGGTCGGCAGCGGCTTCACCGCGGCCAGCCTGAAGAAGGTCCGT
GAGCGCCTGGAACCCCTCGCGGTCCGCTCCAGCCCATTGGCGAAGGTGCCGCCGGCGCGCGAGACcGGGTCG
GTGCAGTGGGTGCGCCCGCAACAGCTGTGCGAGGTTTCCTATGCGCAGATGACCCGTGGCGGGATCATCCGC
CAGGCAGTGTTCCACGGCTTGCGCGAAGACAAGCCGGCGCGCGAGGTGACCGGCGAGCGTCCCGCCGGCCCG
CCGCCGCTGCGCGGCGCGCGCAAGGCCGGCGCCGGTGCGTCGCGGGCGGCCACCGCCGGCGTGCGCATCAGC
CATCCGCAGCGGCTGATCGACCCGTCGATCCAGGCCAGCAAGCTGGAACTCGCCGAGTTCCATGCGCGCTAC
GCCGACCTGCTCCTGCGCGACCTGCGCGAGCGCCCGGTGTCGCTGGTGCGCGGCCCCGACGGAATCGGCGGC
GAACTGTTCTTCCAGAAGCACGCGGCGCGCCTGAAGATCCCCGGCATCGTCCAGCTCGACCCGGCGCTCGAT
CCCGGTCATCCGCCGCTGTTGCAGATCCGCAGCGCCGAGGCGCTGGTCGGCGCGGTGCAGATGGGCAGCATC
GAATTCCATACCTGGAACGCCAGCCTGGCCAACCTGGAGCGGCCCGACCGTTTCGTCCTCGACCTCGACCCG
GACCCGGCGCTGCCGTGGAAGCGCATGCTCGAAGCGACCCAGCTGAGCCTGACGTTGCTCGACGAGCTGGGC
CTGCGCGCCTTCCTCAAGACCAGCGGCGGCAAGGGCATGCACCTGCTGGTGCCGCTGGAGCGCCGGCATGGC
TGGGACGAGGTCAAGGATTTCGCCCAGGCCATCTCCCAGCACTTGGCGCGCCTGATGCCGGAGCGTTTCTCG
GCGGTTTCCGGGCCGCGCAACCGGGTCGGCAAGATCTTCGTCGACTACCTGCGCAACAGCCGCGGCGCCAGC
ACCGTGGCCGCCTACTCGGTGCGCGCCCGCGAAGGGTTGCCGGTGTCGGTACCGGTGTTCCGCGAGGAACTC
GACTCGCTGCAGGGCGCCAACCAATGGAACCTGCGCAGTCTGCCGCAGCGCCTCGACGAACTCGCCGGCGAC
GATCCCTGGGCCGACTACGCCGGCACCCGCCAGCGCATCAGCGCGGCCATGCGGCGCCAGCTCGGGCGCGGC
TGA
Translation:
MPSSKPLAEYARKRDFRQTPEPSGRKPRKDSTGLLRYCVQKHDASRLHYDFRLELDGTLKSWAVPKGPCLDP
AVKRLAVQVEDHPLDYADFEGSIPQGHYGAGDVIVWDRGAWTPLDDPREGLEKGHLSFALDGEKLSGRWHLI
RTNLRGKQPQWFLVKAKDGEARSLDCFDVLKERPDSVLSERTLLPRHGEAATPAARPARRGKSGGKTPMPEW
IAPELASLVEQPPRGEWAYELKLDGYRLMSRIEDGHVRLLTRNGHDWTERLPHLEKALAGLGLQRSWLDGEL
VVLDEEGRPDFQALQNAFEEGRGENILYVLFDLPYHEGEDLRDVALEERRARLEALLEGRDEDPLRFSATLA
EDPRDLLASACKLGLEGVIGKRLGSAYRSRRSNDWIKLKCQLRQEFVIVGYTEPKGSRRHIGALLLGLYSPD
EERRLRYAGKVGSGFTAASLKKVRERLEPLAVRSSPLAKVPPARETGSVQWVRPQQLCEVSYAQMTRGGIIR
QAVFHGLREDKPAREVTGERPAGPPPLRGARKAGAGASRAATAGVRISHPQRLIDPSIQASKLELAEFHARY
ADLLLRDLRERPVSLVRGPDGIGGELFFQKHAARLKIPGIVQLDPALDPGHPPLLQIRSAEALVGAVQMGSI
EFHTWNASLANLERPDRFVLDLDPDPALPWKRMLEATQLSLTLLDELGLRAFLKTSGGKGMHLLVPLERRHG
WDEVKDFAQAISQHLARLMPERFSAVSGPRNRVGKIFVDYLRNSRGASTVAAYSVRAREGLPVSVPVFREEL
DSLQGANQWNLRSLPQRLDELAGDDPWADYAGTRQRISAAMRRQLGRG*
AnnotationID:155GeneID:145
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 11:11:21
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-dependent DNA ligase
Cell Localization:()
Synonyms:PA2138
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3285,COG1793
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN68867.1|AE016518_13 (AE016786) DNA ligase, ATP-dependent, putative [Pseudomonas putida
           KT2440]
          Length = 833

 Score =  946 bits (2445), Expect = 0.0
 Identities = 478/837 (57%), Positives = 598/837 (71%), Gaps = 9/837 (1%)

>emb|CAE33337.1| (BX640445) Putative ATP-dependent DNA-ligase [Bordetella
           bronchiseptica]
          Length = 820

 Score =  727 bits (1876), Expect = 0.0
 Identities = 412/854 (48%), Positives = 540/854 (63%), Gaps = 54/854 (6%)

Structural Features:
COG3285, COG3285, Predicted eukaryotic-type DNA primase 
[DNA replication, recombination, and repair]
CD-Length = 299 residues, 100.0% aligned
Score =  344 bits (884), Expect = 2e-95
Identities = 136/302 (45%), Positives = 182/302 (60%), Gaps = 5/302 (1%)

COG1793, CDC9, ATP-dependent DNA ligase [DNA replication, recombination, and repair]
CD-Length = 444 residues,  97.5% aligned
Score =  303 bits (776), Expect = 8e-83
Identities = 176/473 (37%), Positives = 230/473 (48%), Gaps = 59/473 (12%)

Genomic Context:
Comment:
ReferenceID:293
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17435
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32584
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:145_cdd.html
URL:
Homologs By Global Alignment
Gene ID:145

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
266 PA2138_tr translation of PA2138 840 99.64 99.64 0 4366.0
17772 gb|AAG05526.1|AE004641_5 (AE004641) probable ATP-dependent DNA ligase [Pseudomonas aeruginosa PAO1] 840 99.64 99.64 0 4366.0
17773 gb|AAN68867.1|AE016518_13 (AE016786) DNA ligase, ATP-dependent, putative [Pseudomonas putida KT2440] 843 56.93 71.05 13 2457.0
17774 gb|AAO56939.1| (AE016868) DNA ligase, ATP-dependent, putative [Pseudomonas syringae pv. tomato str. DC3000] 858 55.82 69.46 25 2387.0
17775 emb|CAE33337.1| (BX640445) Putative ATP-dependent DNA-ligase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 859 48.07 62.98 58 1931.0
GC ORFID: 43147How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2138Glimmer Score:
Start: 1663605Stop: 1666127
Length: 2523
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2138 translation of PA2138Homolog Bit Score 1686.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene191 (ORF: BLASTX 921.0), t_PA2138 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCAGCAGCAAGCCGCTCGCCGAGTACGCCCGCAAGCGCGATTTCCGCCAGACCCCGGAGCCCAGCGGC
CGCAAGCCTCGCAAGGACAGCACCGGTCTGCTCCGCTATTGCGTCCAGAAGCACGACGCCAGCCGCCTGCAC
TACGACTTCCGCCTGGAGCTGGATGGCACCTTGAAGAGCTGGGCGGTGCCCAAGGGGCCGTGCCTCGACCCG
GCGGTGAAGCGGCTCGCGGTGCAGGTTGAGGACCATCCGCTGGACTATGCCGATTTCGAAGGCAGCATCCCC
CAGGGGCACTACGGCGCCGGCGATGTCATCGTCTGGGACCGAGGCGCCTGGACGCCTCTGGACGATCCGCGC
GAGGGCCTGGAAAAGGGCCATCTCAGCTTCGCCCTGGATGGCGAGAAACTCTCCGGGCGTTGGCACCTGATC
CGCACCAACCTGCGCGGCAAGCAGCCCCAGTGGTTCCTGGTCAAGGCCAAGGACGGCGAGGCGCGCAGCCTG
GATTGCTTCGACGTGCTGAAGGAGCGTCCCGACAGCGTGCTCAGCGAGCGTACGCTGCTGCCCCGCCATGGC
GAAGCCGCCACGCCCGCGGCCAGGCCGGCGCGACGCGGCAAGAGCGGGGGGAAGACGCCGATGCCCGAATGG
ATCGCCCCCGAGCTGGCCAGCCTGGTCGAGCAGCCTCCGCGAGGGGAGTGGGCCTACGAACTCAAGCTGGAC
GGCTATCGGCTGATGAGCCGCATCGAAGACGGCCACGTGCGCCTGCTGACCCGCAACGGCCATGACTGGACC
GAACGCCTGCCGCACCTGGAGAAGGCATTGGCCGGGCTCGGTCTGCAGCGCAGTTGGCTGGACGGCGAACTG
GTGGTCCTCGACGAGGAGGGTCGACCGGACTTCCAGGCCCTGCAGAACGCCTTCGAGGAAGGTCGCGGCGAG
AACATCCTGTACGTCCTCTTCGACCTGCCGTACCACGAAGGCGAGGATCTGCGCGATGTCGCCCTGGAGGAG
CGCCGCGCGCGCCTGGAGGCGCTGCTGGAAGGGCGCGACGAAGACCCGCTGCGGTTCTCCGCGACGCTCGCG
GAAGACCCCCGCGACCTGCTGGCCAGCGCCTGCAAGCTCGGTCTCGAAGGCGTGATCGGCAAGCGTCTGGGC
AGCGCCTACCGTTCGCGCCGCAGCAACGACTGGATCAAGCTGAAGTGCCAGTTGCGCCAGGAGTTCGTGATC
GTCGGCTATACCGAGCCGAAGGGCTCTCGCCGGCATATCGGCGCCTTGCTGCTCGGCCTCTACAGCCCTGAC
GAGGAGCGCCGGCTGCGCTATGCCGGCAAGGTCGGCAGCGGCTTCACCGCGGCCAGCCTGAAGAAGGTCCGT
GAGCGCCTGGAACCCCTCGCGGTCCGCTCCAGCCCATTGGCGAAGGTGCCGCCGGCGCGCGAGACcGGGTCG
GTGCAGTGGGTGCGCCCGCAACAGCTGTGCGAGGTTTCCTATGCGCAGATGACCCGTGGCGGGATCATCCGC
CAGGCAGTGTTCCACGGCTTGCGCGAAGACAAGCCGGCGCGCGAGGTGACCGGCGAGCGTCCCGCCGGCCCG
CCGCCGCTGCGCGGCGCGCGCAAGGCCGGCGCCGGTGCGTCGCGGGCGGCCACCGCCGGCGTGCGCATCAGC
CATCCGCAGCGGCTGATCGACCCGTCGATCCAGGCCAGCAAGCTGGAACTCGCCGAGTTCCATGCGCGCTAC
GCCGACCTGCTCCTGCGCGACCTGCGCGAGCGCCCGGTGTCGCTGGTGCGCGGCCCCGACGGAATCGGCGGC
GAACTGTTCTTCCAGAAGCACGCGGCGCGCCTGAAGATCCCCGGCATCGTCCAGCTCGACCCGGCGCTCGAT
CCCGGTCATCCGCCGCTGTTGCAGATCCGCAGCGCCGAGGCGCTGGTCGGCGCGGTGCAGATGGGCAGCATC
GAATTCCATACCTGGAACGCCAGCCTGGCCAACCTGGAGCGGCCCGACCGTTTCGTCCTCGACCTCGACCCG
GACCCGGCGCTGCCGTGGAAGCGCATGCTCGAAGCGACCCAGCTGAGCCTGACGTTGCTCGACGAGCTGGGC
CTGCGCGCCTTCCTCAAGACCAGCGGCGGCAAGGGCATGCACCTGCTGGTGCCGCTGGAGCGCCGGCATGGC
TGGGACGAGGTCAAGGATTTCGCCCAGGCCATCTCCCAGCACTTGGCGCGCCTGATGCCGGAGCGTTTCTCG
GCGGTTTCCGGGCCGCGCAACCGGGTCGGCAAGATCTTCGTCGACTACCTGCGCAACAGCCGCGGCGCCAGC
ACCGTGGCCGCCTACTCGGTGCGCGCCCGCGAAGGGTTGCCGGTGTCGGTACCGGTGTTCCGCGAGGAACTC
GACTCGCTGCAGGGCGCCAACCAATGGAACCTGCGCAGTCTGCCGCAGCGCCTCGACGAACTCGCCGGCGAC
GATCCCTGGGCCGACTACGCCGGCACCCGCCAGCGCATCAGCGCGGCCATGCGGCGCCAGCTCGGGCGCGGC
TGA