ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1449

TrivialName: PA14_43870

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_43870

PAO1 Ortholog Locus: PA1595

Sequence Length: 1230

Protein Length: 409

Start: 3907319

Stop: 3906090

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04984.1|AE004587_8 (AE004587) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 405/409 (99%), Positives = 406/409 (99%)

Sequence:

ATGGATGCCTTGCTGATTCTGGGCGGCCTGCTGCTGATGGTCGCCGGCTATATCTGGGTCATCGTCCTGGCC
TTCGGTACCGGTCTGCTGTGGGGTTACGGCAGCCTTTTCCCGCCGGTGGCGCTGGCCTATATCGGCGTGCAC
TGGCGTACGGCGCGCAAGGGCGTCGGGCTGGCCGCGCTGGGTTGCATCCCGCTGGTGGTCGGCCTGGCGCTG
CTGGCCAGTCACGACGCTGCGCGACTGGAGGCGATCCTCAGCCTGCGCTGGCTGAAGCCGGAGGCCAGGCCG
CCGGCGGAACTGGCCATCGCGCTCAGCGGGGAGTTCAACGGCAAGCCTTTCGCGCCGCAGAGCGGCGAGTTG
ATCGGCGGCGTGCTGAGCCTGCGCCAGGGGCACGATTTCTACGCCCAGCGCGAGCTGCAGATCCGCCTTCCG
GCACAGCCGCTCGGGGCGCTGCGCCTGGACGTGCTGCCCGAGGACGGCGGCGCGTTGCCAGAAGTCGAGCTG
AGCTGGCTGCAACCGGAGCAGGACCTGCCCGAGGCGCGTCGTCTCCTGCGTCGCTATACCTTGCACCTGGAC
CTGCGGCCCAAGGCGCCGAACCGCCTGGAGGGCGAGTTCCACCTGAGCCTGCCGAGCGACTACCGGACCACC
CTCAGCGGCCACGTCGAGCTATATACCGACCGGCTGCGCTATCGGCACGGCAAGGTCGACCTGGGCTACGAC
TCCGACGATACCCTGGCCCTGGTCTTGCGCGACTATCTGCAGCGGCGCTTCGCCAGCCGCGACGTCAGCCTC
GTGCGGGCGCCGTCCTGGCGCGCGGCCAGCCATGCGCGGCCGCTGCGTATCGAGGCCCTGGTGGCCGGCCAG
ACTCAGGTGCTGGAGCTGACGCTGGAGAAGAACGCCCGGCGGGAGTGGACGGTGCGCGGCGACGCGTTCCCC
GCCTTGCCGGCGGAGCCTGCGACCGTGGCCGCGGCGGCGCCGCCCGAGCCGCAGGCGCTGCCGGCGCCGGGC
AACGCCACCCTCGACCTGGAGCTGGTCCAGGTCGAACCGCAGCGCTACAGCCAGCGCCTGGTCAAGGCCACT
ACGGTACGCGGGCGTATCGCCGAGGGCCGTTTCACCGGCCTCGACAGCGAGGGGCGCCTGGTGATCCGCCGG
GAAATGCCCGGTGCGGGGGAGGCGAGCTACCTGTTGCACCCGGCGGAGATCGCCCGTCTCGAACTGCTCGAA
CGCTAG

Translation:

MDALLILGGLLLMVAGYIWVIVLAFGTGLLWGYGSLFPPVALAYIGVHWRTARKGVGLAALGCIPLVVGLAL
LASHDAARLEAILSLRWLKPEARPPAELAIALSGEFNGKPFAPQSGELIGGVLSLRQGHDFYAQRELQIRLP
AQPLGALRLDVLPEDGGALPEVELSWLQPEQDLPEARRLLRRYTLHLDLRPKAPNRLEGEFHLSLPSDYRTT
LSGHVELYTDRLRYRHGKVDLGYDSDDTLALVLRDYLQRRFASRDVSLVRAPSWRAASHARPLRIEALVAGQ
TQVLELTLEKNARREWTVRGDAFPALPAEPATVAAAAPPEPQALPAPGNATLDLELVQVEPQRYSQRLVKAT
TVRGRIAEGRFTGLDSEGRLVIRREMPGAGEASYLLHPAEIARLELLER*

AnnotationID:1458 GeneID:1449

AnnotatorUID: diggins

Modification Date/Time: 2005-02-25 15:03:47

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA1595

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:2901

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20045

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37276

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1449_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1449

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2613 PA1595_tr translation of PA1595 409 99.02 99.26 0 2067.0

81903 gb|AAG04984.1|AE004587_8 (AE004587) hypothetical protein PA1595 [Pseudomonas aeruginosa PAO1] 409 99.02 99.26 0 2067.0

GC ORFID: `44451`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1595`	Glimmer Score:
Start: `1046590`	Stop: `1047819`
Length: `1230`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA1595 translation of PA1595`	Homolog Bit Score `800.0`
Other Homologs: `t_PA1595 (ORF: GLIMMER)`
GC ORF Sequence
ATGGATGCCTTGCTGATTCTGGGCGGCCTGCTGCTGATGGTCGCCGGCTATATCTGGGTCATCGTCCTGGCC TTCGGTACCGGTCTGCTGTGGGGTTACGGCAGCCTTTTCCCGCCGGTGGCGCTGGCCTATATCGGCGTGCAC TGGCGTACGGCGCGCAAGGGCGTCGGGCTGGCCGCGCTGGGTTGCATCCCGCTGGTGGTCGGCCTGGCGCTG CTGGCCAGTCACGACGCTGCGCGACTGGAGGCGATCCTCAGCCTGCGCTGGCTGAAGCCGGAGGCCAGGCCG CCGGCGGAACTGGCCATCGCGCTCAGCGGGGAGTTCAACGGCAAGCCTTTCGCGCCGCAGAGCGGCGAGTTG ATCGGCGGCGTGCTGAGCCTGCGCCAGGGGCACGATTTCTACGCCCAGCGCGAGCTGCAGATCCGCCTTCCG GCACAGCCGCTCGGGGCGCTGCGCCTGGACGTGCTGCCCGAGGACGGCGGCGCGTTGCCAGAAGTCGAGCTG AGCTGGCTGCAACCGGAGCAGGACCTGCCCGAGGCGCGTCGTCTCCTGCGTCGCTATACCTTGCACCTGGAC CTGCGGCCCAAGGCGCCGAACCGCCTGGAGGGCGAGTTCCACCTGAGCCTGCCGAGCGACTACCGGACCACC CTCAGCGGCCACGTCGAGCTATATACCGACCGGCTGCGCTATCGGCACGGCAAGGTCGACCTGGGCTACGAC TCCGACGATACCCTGGCCCTGGTCTTGCGCGACTATCTGCAGCGGCGCTTCGCCAGCCGCGACGTCAGCCTC GTGCGGGCGCCGTCCTGGCGCGCGGCCAGCCATGCGCGGCCGCTGCGTATCGAGGCCCTGGTGGCCGGCCAG ACTCAGGTGCTGGAGCTGACGCTGGAGAAGAACGCCCGGCGGGAGTGGACGGTGCGCGGCGACGCGTTCCCC GCCTTGCCGGCGGAGCCTGCGACCGTGGCCGCGGCGGCGCCGCCCGAGCCGCAGGCGCTGCCGGCGCCGGGC AACGCCACCCTCGACCTGGAGCTGGTCCAGGTCGAACCGCAGCGCTACAGCCAGCGCCTGGTCAAGGCCACT ACGGTACGCGGGCGTATCGCCGAGGGCCGTTTCACCGGCCTCGACAGCGAGGGGCGCCTGGTGATCCGCCGG GAAATGCCCGGTGCGGGGGAGGCGAGCTACCTGTTGCACCCGGCGGAGATCGCCCGTCTCGAACTGCTCGAA CGCTAG