ViewGene

Locus Name:
GeneID:
Location:

GeneID:1448
TrivialName: PA14_52720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52720
PAO1 Ortholog Locus:PA0895
Sequence Length:1221
Protein Length:406
Start: 4673681
Stop: 4672461
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04284.1|AE004524_1 (AE004524) N-succinylglutamate 5-semialdehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 404/406 (99%), Positives = 405/406 (99%)
Sequence:
ATGTCCGCTCCCCATGCGCAGGTAGAACGTGCCGATTTCGACCGGTATATGGTCCCCAACTACGCCCCCGCC
GCCTTCATTCCGGTGCGAGGCGAGGGATCGCGCGTCTGGGACCAGAGCGGCCGCGAACTGATCGATTTCGCC
GGCGGCATCGCCGTGACCTCCCTGGGCCACGCGCATCCGGCGCTGGTCAAGGCGCTCACCGAGCAGGCCCAG
CGCATCTGGCACGTTTCCAACGTCTTCACCAACGAGCCGGCCCTGCGCCTGGCGCGCAAGCTGGTGGACGCC
ACCTTCGCCGAGCGGGTGTTCCTCGCCAACTCCGGCGCCGAAGCCAACGAGGCGGCCTTCAAGCTGGCTCGC
CGCTACGCCAACGATGTCTACGGCCCGCAGAAGTACGAGATCATCGCGGCCAGCAACAGCTTCCACGGGCGC
ACCCTGTTCACCGTCAACGTCGGCGGCCAGCCGAAGTATTCCGATGGCTTCGGGCCCAAGTTCGAGGGTATC
ACCCACGTTCCCTACAACGACCTGGAAGCGCTGAAGGCGGCGATCTCCGACAAGACCTGCGCCGTGGTGCTG
GAACCGATCCAGGGCGAGGGCGGCGTGCTGCCGGCGCAGCAGGCCTACCTGGAAGGGGCGCGCAAGCTGTGC
AACGAGCACAACGCGCTGCTGGTCTTCGACGAGGTCCAGAGCGGCATGGGCCGGGTCGGCGAGCTGTTCGCC
TACATGCACTACGGCGTGGTCCCGGACATCCTCTCCAGCGCCAAGAGCCTGGGCGGCGGCTTCCCTATCGGT
GCGATGCTGACCACCGGCGAGATCGCCAAGCACCTGTCGGTCGGCACCCACGGCACCACCTACGGCGGCAAC
CCGCTGGCCTCGGCGGTGGCCGAGGCGGCGCTGGACGTGATCAATACCCCGGAAGTGCTGGATGGCGTGAAG
GCCAAGCATGAGCGCTTCAAGTCCCGCCTGCAGAAGATCGGCCAGGAGTACGGCATCTTCGGCGAGATTCGC
GGCATGGGCCTGCTGATCGGCGCGGCGCTGACCGACGAGTGGAAGGGCAAGGCCAGGGATGTGCTCAACGCC
GCCGAGAAAGAGGCGGTCATGGTGCTCCAGGCCAGCCCGGACGTGGTGCGCTTCGCGCCGAGCCTGGTGATC
GACGACGCCGAGATCGACGAAGGCCTGGAGCGCTTCGAGCGCGCCGTGGCCAAGCTGGTCCGCGGCTGA
Translation:
MSAPHAQVERADFDRYMVPNYAPAAFIPVRGEGSRVWDQSGRELIDFAGGIAVTSLGHAHPALVKALTEQAQ
RIWHVSNVFTNEPALRLARKLVDATFAERVFLANSGAEANEAAFKLARRYANDVYGPQKYEIIAASNSFHGR
TLFTVNVGGQPKYSDGFGPKFEGITHVPYNDLEALKAAISDKTCAVVLEPIQGEGGVLPAQQAYLEGARKLC
NEHNALLVFDEVQSGMGRVGELFAYMHYGVVPDILSSAKSLGGGFPIGAMLTTGEIAKHLSVGTHGTTYGGN
PLASAVAEAALDVINTPEVLDGVKAKHERFKSRLQKIGQEYGIFGEIRGMGLLIGAALTDEWKGKARDVLNA
AEKEAVMVLQASPDVVRFAPSLVIDDAEIDEGLERFERAVAKLVRG*
AnnotationID:1457GeneID:1448
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 11:11:07
Gene Name:aruC
Confidence Code:1
GeneProduct:N-succinylglutamate 5-semialdehyde dehydrogenase
Cell Localization:()
Synonyms: astC argD dapC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4992, pfam00202, COG0160
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Urea cycle and metabolism of amino groups 
Homology:
Structural Features:
COG4992, ArgD, Ornithine/acetylornithine aminotransferase. Score: 556, 4e-159
pfam00202, Aminotran_3, Aminotransferase class-III.  Score: 406, 7e-114
COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases. Score: 334, 2e-92
Genomic Context:
Comment:
ReferenceID:2899
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:16988
Author/Investigator(s):
Title:
PubMed:
MedLine:
Source:
NCBI Conserved Domain Search.
Reference Type:Blast (text/plain)
Data:PA0895_CDS.cgi
URL:
ReferenceID:20043
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32003
Author/Investigator(s): Itoh Y.
Title: Cloning and characterization of the aru genes encoding enzymes of the catabolic arginine succinyltransferase pathway in Pseudomonas aeruginosa.
PubMed: 98053840
MedLine:
Source:
J Bacteriol. 1997 Dec;179(23):7280-90.
Reference Type:Journal
Data:
URL:
Homologs By Global Alignment
Gene ID:1448

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2612 PA0895_tr translation of PA0895 406 99.50 99.75 0 2067.0
81801 gb|AAG04284.1|AE004524_1 (AE004524) N-succinylglutamate 5-semialdehyde dehydrogenase [Pseudomonas aeruginosa PAO1] 406 99.50 99.75 0 2067.0
81802 gb|AAC46009.1| (AF011922) succinylornithine aminotransferase [Pseudomonas aeruginosa] 406 99.50 99.75 0 2067.0
81803 gb|AAN70056.1|AE016645_2 (AE016790) acetylornithine aminotransferase [Pseudomonas putida KT2440] 406 79.55 89.90 0 1729.0
81804 gb|AAO55351.1| (AE016862) acetylornithine delta-aminotransferase [Pseudomonas syringae pv. tomato str. DC3000] 406 77.58 88.42 1 1699.0
GC ORFID: 44450How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0895Glimmer Score:
Start: 280226Stop: 281446
Length: 1221
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0895 translation of PA0895Homolog Bit Score 800.0
Other Homologs: t_PA0895 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCGCTCCCCATGCGCAGGTAGAACGTGCCGATTTCGACCGGTATATGGTCCCCAACTACGCCCCCGCC
GCCTTCATTCCGGTGCGAGGCGAGGGATCGCGCGTCTGGGACCAGAGCGGCCGCGAACTGATCGATTTCGCC
GGCGGCATCGCCGTGACCTCCCTGGGCCACGCGCATCCGGCGCTGGTCAAGGCGCTCACCGAGCAGGCCCAG
CGCATCTGGCACGTTTCCAACGTCTTCACCAACGAGCCGGCCCTGCGCCTGGCGCGCAAGCTGGTGGACGCC
ACCTTCGCCGAGCGGGTGTTCCTCGCCAACTCCGGCGCCGAAGCCAACGAGGCGGCCTTCAAGCTGGCTCGC
CGCTACGCCAACGATGTCTACGGCCCGCAGAAGTACGAGATCATCGCGGCCAGCAACAGCTTCCACGGGCGC
ACCCTGTTCACCGTCAACGTCGGCGGCCAGCCGAAGTATTCCGATGGCTTCGGGCCCAAGTTCGAGGGTATC
ACCCACGTTCCCTACAACGACCTGGAAGCGCTGAAGGCGGCGATCTCCGACAAGACCTGCGCCGTGGTGCTG
GAACCGATCCAGGGCGAGGGCGGCGTGCTGCCGGCGCAGCAGGCCTACCTGGAAGGGGCGCGCAAGCTGTGC
AACGAGCACAACGCGCTGCTGGTCTTCGACGAGGTCCAGAGCGGCATGGGCCGGGTCGGCGAGCTGTTCGCC
TACATGCACTACGGCGTGGTCCCGGACATCCTCTCCAGCGCCAAGAGCCTGGGCGGCGGCTTCCCTATCGGT
GCGATGCTGACCACCGGCGAGATCGCCAAGCACCTGTCGGTCGGCACCCACGGCACCACCTACGGCGGCAAC
CCGCTGGCCTCGGCGGTGGCCGAGGCGGCGCTGGACGTGATCAATACCCCGGAAGTGCTGGATGGCGTGAAG
GCCAAGCATGAGCGCTTCAAGTCCCGCCTGCAGAAGATCGGCCAGGAGTACGGCATCTTCGGCGAGATTCGC
GGCATGGGCCTGCTGATCGGCGCGGCGCTGACCGACGAGTGGAAGGGCAAGGCCAGGGATGTGCTCAACGCC
GCCGAGAAAGAGGCGGTCATGGTGCTCCAGGCCAGCCCGGACGTGGTGCGCTTCGCGCCGAGCCTGGTGATC
GACGACGCCGAGATCGACGAAGGCCTGGAGCGCTTCGAGCGCGCCGTGGCCAAGCTGGTCCGCGGCTGA