ViewGene
Locus Name:
GeneID:
Location:

GeneID:1447
TrivialName: PA14_71670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71670
PAO1 Ortholog Locus:PA5430
Sequence Length:1215
Protein Length:404
Start: 6385185
Stop: 6383971
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08815.1|AE004955_9 (AE004955) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 403/404 (99%), Positives = 403/404 (99%)
Sequence:
ATGAGTGTCGCCCTTTCCGCCGCGCCCGAGCGCAAGCTCGCCGCCCCCCTGATCGCCTTCGCCCTGCTGGTG
CTCGGCGGGCTGTTCCTGTTCAACGCGGTCAGCGCGCGCCAGGCCATCCTCTTCATCGTCGGCGGCGCCCTG
GGCCTGACCCTCTACCACGCCGCCTTCGGCTTCACCTCCGCCTGGCGGGTATTCATCCGCGAACGGCGTGGC
GCCGGGCTGCGCGCGCAGATGGTGATGCTGGCGCTGGCGGTGCTGCTGTTCTTCCCGGCGCTGGCGGCGGGC
AGCCTGTTCGGCCAGCCGGTGAGCGGTTTCGTCTCGCCGGTCGGCACTTCGGTGATCGTCGGCGCCTTCATT
TTCGGCATCGGCATGCAACTGGGCGGCGGCTGCGCCTCCGGCACCCTGTTCACCGTCGGCGGCGGCAACGCG
CGGATGCTGGTGACCCTGCTGTTCTTCATCCTCGGCTCGCTGATCGCCACCCAGCATGTCGGCTGGTGGTTC
GCCCTGCCGTCGCTGCCGCCGATCTCGCTGGTCGCCGAACTGGGCCTGGCACCGGCGCTGGTGTTGAGCCTG
GCGGTGTTCATCGGCATCGCCGGGGTCACGGTACGCATGGAGAAGGCCCGCCACGGCACCCTGGAAACCCCG
CCGAGCGCCGAATGGCGCGGCTGGCGGCGCTTCCTCCGCGGCCCCTGGCCGCTGGTCTGGGGCGCGCTGGCG
CTGGCGCTGCTCAACTTCCTCACCCTGTACCTCGCCGGACGCCCCTGGGGCATCACGTCGGCCTTCGCCCTG
TGGGGCGCGAAGATCGCCCAGGGCGTGGGCCTGGACGTCGGCGCCTGGGCCTTCTGGCAGACGCCGGCGAAC
GCCAAGGCGCTGGCCGCGCCGCTGTGGGAAGACATCACCAGCGTGATGGACATCGGCATCGTCCTCGGCGCG
CTGCTCGCCGCCGGCCTGGCCGGACGCTTCGCGCCGAACCTGGACATCCCGCGCCGTTCGCTGGCGGCGGCG
GTGATCGGCGGGCTGCTGCTCGGCTACGGCGCGCGCCTGGCCTATGGCTGCAACATCGGCGCGTATTTCAGC
GGGATCGCTTCCGGCAGCCTGCATGGCTGGTTGTGGTTGGTGGCGGCGTTTGCCGGCAACAGCGTCGGGGTA
CGGGTATTGAGGCCTTATTTCTTCCCGGAGGAGCGGCGGGAGCAAGGGTTGACGGGGTGTTGA
Translation:
MSVALSAAPERKLAAPLIAFALLVLGGLFLFNAVSARQAILFIVGGALGLTLYHAAFGFTSAWRVFIRERRG
AGLRAQMVMLALAVLLFFPALAAGSLFGQPVSGFVSPVGTSVIVGAFIFGIGMQLGGGCASGTLFTVGGGNA
RMLVTLLFFILGSLIATQHVGWWFALPSLPPISLVAELGLAPALVLSLAVFIGIAGVTVRMEKARHGTLETP
PSAEWRGWRRFLRGPWPLVWGALALALLNFLTLYLAGRPWGITSAFALWGAKIAQGVGLDVGAWAFWQTPAN
AKALAAPLWEDITSVMDIGIVLGALLAAGLAGRFAPNLDIPRRSLAAAVIGGLLLGYGARLAYGCNIGAYFS
GIASGSLHGWLWLVAAFAGNSVGVRVLRPYFFPEERREQGLTGC*
AnnotationID:1456GeneID:1447
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 15:03:49
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA5430
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58922.1| (AE016876) YeeE/YedE family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 403

 Score =  618 bits (1593), Expect = e-176
 Identities = 308/404 (76%), Positives = 346/404 (85%), Gaps = 1/404 (0%)

>emb|CAE32468.1| (BX640443) putative membrane protein [Bordetella bronchiseptica]
          Length = 435

 Score =  489 bits (1260), Expect = e-138
 Identities = 251/377 (66%), Positives = 294/377 (77%), Gaps = 5/377 (1%)

>emb|CAE43781.1| (BX640421) putative membrane protein [Bordetella pertussis]
          Length = 435

 Score =  487 bits (1254), Expect = e-137
 Identities = 251/377 (66%), Positives = 294/377 (77%), Gaps = 5/377 (1%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2897




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20041




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34680




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1447_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1447
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2611
                           PA5430_tr
                           translation of PA5430
                           404
                           99.75
                           99.75
                           0
                           2070.0
     

     
     
81792
                           gb|AAG08815.1|AE004955_9
                           (AE004955) hypothetical protein PA5430 [Pseudomonas aeruginosa PAO1]
                           404
                           99.75
                           99.75
                           0
                           2070.0
     

     
     
81793
                           gb|AAO58922.1|
                           (AE016876) YeeE/YedE family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           404
                           76.23
                           85.64
                           1
                           1595.0
     

     
     
81794
                           gb|AAN69207.1|AE016555_5
                           (AE016787) conserved hypothetical protein [Pseudomonas putida KT2440]
                           405
                           74.07
                           83.20
                           2
                           1551.0
     

     
     
81796
                           emb|CAE43781.1|
                           (BX640421) putative membrane protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           447
                           57.04
                           67.56
                           55
                           1264.0
     

     






      

          
GC ORFID: 44449How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5430Glimmer Score: 

          
Start: 5648874Stop: 5647660

          
Length: 1215


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5430 translation of PA5430Homolog Bit Score 801.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4184 (ORF: BLASTX 617.0), t_PA5430 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGTCGCCCTTTCCGCCGCGCCCGAGCGCAAGCTCGCCGCCCCCCTGATCGCCTTCGCCCTGCTGGTG 
CTCGGCGGGCTGTTCCTGTTCAACGCGGTCAGCGCGCGCCAGGCCATCCTCTTCATCGTCGGCGGCGCCCTG 
GGCCTGACCCTCTACCACGCCGCCTTCGGCTTCACCTCCGCCTGGCGGGTATTCATCCGCGAACGGCGTGGC 
GCCGGGCTGCGCGCGCAGATGGTGATGCTGGCGCTGGCGGTGCTGCTGTTCTTCCCGGCGCTGGCGGCGGGC 
AGCCTGTTCGGCCAGCCGGTGAGCGGTTTCGTCTCGCCGGTCGGCACTTCGGTGATCGTCGGCGCCTTCATT 
TTCGGCATCGGCATGCAACTGGGCGGCGGCTGCGCCTCCGGCACCCTGTTCACCGTCGGCGGCGGCAACGCG 
CGGATGCTGGTGACCCTGCTGTTCTTCATCCTCGGCTCGCTGATCGCCACCCAGCATGTCGGCTGGTGGTTC 
GCCCTGCCGTCGCTGCCGCCGATCTCGCTGGTCGCCGAACTGGGCCTGGCACCGGCGCTGGTGTTGAGCCTG 
GCGGTGTTCATCGGCATCGCCGGGGTCACGGTACGCATGGAGAAGGCCCGCCACGGCACCCTGGAAACCCCG 
CCGAGCGCCGAATGGCGCGGCTGGCGGCGCTTCCTCCGCGGCCCCTGGCCGCTGGTCTGGGGCGCGCTGGCG 
CTGGCGCTGCTCAACTTCCTCACCCTGTACCTCGCCGGACGCCCCTGGGGCATCACGTCGGCCTTCGCCCTG 
TGGGGCGCGAAGATCGCCCAGGGCGTGGGCCTGGACGTCGGCGCCTGGGCCTTCTGGCAGACGCCGGCGAAC 
GCCAAGGCGCTGGCCGCGCCGCTGTGGGAAGACATCACCAGCGTGATGGACATCGGCATCGTCCTCGGCGCG 
CTGCTCGCCGCCGGCCTGGCCGGACGCTTCGCGCCGAACCTGGACATCCCGCGCCGTTCGCTGGCGGCGGCG 
GTGATCGGCGGGCTGCTGCTCGGCTACGGCGCGCGCCTGGCCTATGGCTGCAACATCGGCGCGTATTTCAGC 
GGGATCGCTTCCGGCAGCCTGCATGGCTGGTTGTGGTTGGTGGCGGCGTTTGCCGGCAACAGCGTCGGGGTA 
CGGGTATTGAGGCCTTATTTCTTCCCGGAGGAGCGGCGGGAGCAAGGGTTGACGGGGTGTTGA