ViewGene
Locus Name:
GeneID:
Location:

GeneID:1446
TrivialName: PA14_29160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29160
PAO1 Ortholog Locus:PA2705
Sequence Length:1182
Protein Length:393
Start: 2521753
Stop: 2522934
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06093.1|AE004698_9 (AE004698) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 392/393 (99%), Positives = 393/393 (100%)
Sequence:
ATGCTGCTCAACCTGTTCAACGAAATGCGCGCAGCCAAGGTGCCGGTGTCGGTGCGCGAGTTGCTCGACCTG
ATCGACGCCCTGAAGCACCGCGTGGTGTTCGCCGACATGGACGAGTTCTACTACCTGGCGCGCACCATCATG
GTCAAGGACGAGCGCCACTTCGACAAGTTCGACCGGGCCTTCGGCGCCTACTTCAAGGGCCTGGAGAAGCTC
GACGACCACCTCAAGGCGCTGATCCCCGAGGAATGGCTGCGCAAGGAATTCGAGCGCCTGCTGACCGACGAG
GAAAAGGCGCAGATCCAGTCCCTCGGCGGCCTGGACAAGCTGATCGAGGAGTTCAAGAAACGCCTCGAGGAA
CAGAAGGAGCGCCATGCCGGCGGTAACAAGTGGATCGGTACCGGCGGTACCAGTCCGTTTGGCTCCGGCGGC
TTCAACCCGGAGGGCGTCCGCGTCGGCGACGCCGGCAAGCGCCAGGGCAAGGCGGCCAAGGTCTGGGACCAG
CGCGAATACAAGAACCTCGACGACCAGGTCGAACTGGGTACGCGCAACATCAAGATCGCCCTGCGGCGCCTG
CGCAAGTTCGCCCGTGAGGGCGCGGCGGAGGAGCTGGACATCGACGGCACCATCGACCACACCGCGAAGGAC
GCCGGGCTGCTCAACATCCAGATGCGCCCGGAGCGGCGCAACACGGTGAAGCTGTTGCTGCTGCTGGACATC
GGCGGCTCGATGGACGCCCACGTCAAGGTCTGCGAGGAGCTGTTCTCGGCCTGCAAGACCGAGTTCAAGCAC
CTGGAGTATTTCTACTTCCACAACTTCATCTACGAGTCGGTGTGGAAGAACAACCTGCGCCGCAGCAGCGAA
CGCACCGCCACCTTCGACCTGCTGCACAAGTACGGTCCGGACTACAAGGTGGTGTTCGTCGGCGACGCGGCG
ATGGCGCCCTACGAAATCACCCAGGCCGGCGGCAGCGTCGAGCACTGGAACGAGGAAGCCGGTTACGTCTGG
ATGCAGCGCTTCATGGAGAAGTACAAGAAGCTCATCTGGATCAACCCCTATCCGAAGGACACCTGGAACTAC
ACGGCGTCCACCGGCCTGGTCCGCGAACTGGTCAAGGAACAGATGTATCCGTTGACCCTGAGCGGCCTGGAG
GAGGGTATGCGCTTCCTCTCGCGCGGTTGA
Translation:
MLLNLFNEMRAAKVPVSVRELLDLIDALKHRVVFADMDEFYYLARTIMVKDERHFDKFDRAFGAYFKGLEKL
DDHLKALIPEEWLRKEFERLLTDEEKAQIQSLGGLDKLIEEFKKRLEEQKERHAGGNKWIGTGGTSPFGSGG
FNPEGVRVGDAGKRQGKAAKVWDQREYKNLDDQVELGTRNIKIALRRLRKFAREGAAEELDIDGTIDHTAKD
AGLLNIQMRPERRNTVKLLLLLDIGGSMDAHVKVCEELFSACKTEFKHLEYFYFHNFIYESVWKNNLRRSSE
RTATFDLLHKYGPDYKVVFVGDAAMAPYEITQAGGSVEHWNEEAGYVWMQRFMEKYKKLIWINPYPKDTWNY
TASTGLVRELVKEQMYPLTLSGLEEGMRFLSRG*
AnnotationID:1455GeneID:1446
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 20:08:02
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2705
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2895




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20039




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36323




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1446_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1446
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2610
                           PA2705_tr
                           translation of PA2705
                           393
                           99.74
                           99.99
                           0
                           2070.0
     

     
     
81780
                           gb|AAG06093.1|AE004698_9
                           (AE004698) hypothetical protein PA2705 [Pseudomonas aeruginosa PAO1]
                           393
                           99.74
                           99.99
                           0
                           2070.0
     

     
     
81782
                           gb|AAN70147.1|AE016654_4
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           393
                           87.78
                           94.65
                           1
                           1861.0
     

     
     
81781
                           gb|AAO57372.1|
                           (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           393
                           86.00
                           95.92
                           1
                           1867.0
     

     
     
81783
                           gb|AAK24045.1|
                           (AE005881) hypothetical protein [Caulobacter crescentus CB15]
                           393
                           62.08
                           80.15
                           1
                           1340.0
     

     






      

          
GC ORFID: 44448How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2705Glimmer Score: 

          
Start: 2432173Stop: 2430992

          
Length: 1182


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2705 translation of PA2705Homolog Bit Score 801.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1531 (ORF: BLASTX 728.0), t_PA2705 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGCTCAACCTGTTCAACGAAATGCGCGCAGCCAAGGTGCCGGTGTCGGTGCGCGAGTTGCTCGACCTG 
ATCGACGCCCTGAAGCACCGCGTGGTGTTCGCCGACATGGACGAGTTCTACTACCTGGCGCGCACCATCATG 
GTCAAGGACGAGCGCCACTTCGACAAGTTCGACCGGGCCTTCGGCGCCTACTTCAAGGGCCTGGAGAAGCTC 
GACGACCACCTCAAGGCGCTGATCCCCGAGGAATGGCTGCGCAAGGAATTCGAGCGCCTGCTGACCGACGAG 
GAAAAGGCGCAGATCCAGTCCCTCGGCGGCCTGGACAAGCTGATCGAGGAGTTCAAGAAACGCCTCGAGGAA 
CAGAAGGAGCGCCATGCCGGCGGTAACAAGTGGATCGGTACCGGCGGTACCAGTCCGTTTGGCTCCGGCGGC 
TTCAACCCGGAGGGCGTCCGCGTCGGCGACGCCGGCAAGCGCCAGGGCAAGGCGGCCAAGGTCTGGGACCAG 
CGCGAATACAAGAACCTCGACGACCAGGTCGAACTGGGTACGCGCAACATCAAGATCGCCCTGCGGCGCCTG 
CGCAAGTTCGCCCGTGAGGGCGCGGCGGAGGAGCTGGACATCGACGGCACCATCGACCACACCGCGAAGGAC 
GCCGGGCTGCTCAACATCCAGATGCGCCCGGAGCGGCGCAACACGGTGAAGCTGTTGCTGCTGCTGGACATC 
GGCGGCTCGATGGACGCCCACGTCAAGGTCTGCGAGGAGCTGTTCTCGGCCTGCAAGACCGAGTTCAAGCAC 
CTGGAGTATTTCTACTTCCACAACTTCATCTACGAGTCGGTGTGGAAGAACAACCTGCGCCGCAGCAGCGAA 
CGCACCGCCACCTTCGACCTGCTGCACAAGTACGGTCCGGACTACAAGGTGGTGTTCGTCGGCGACGCGGCG 
ATGGCGCCCTACGAAATCACCCAGGCCGGCGGCAGCGTCGAGCACTGGAACGAGGAAGCCGGTTACGTCTGG 
ATGCAGCGCTTCATGGAGAAGTACAAGAAGCTCATCTGGATCAACCCCTATCCGAAGGACACCTGGAACTAC 
ACGGCGTCCACCGGCCTGGTCCGCGAACTGGTCAAGGAACAGATGTATCCGTTGACCCTGAGCGGCCTGGAG 
GAGGGTATGCGCTTCCTCTCGCGCGGTTGA