ViewGene
Locus Name:
GeneID:
Location:

GeneID:1445
TrivialName: PA14_73010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73010
PAO1 Ortholog Locus:PA5535
Sequence Length:1203
Protein Length:400
Start: 6502688
Stop: 6501486
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08920.1|AE004966_2 (AE004966) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 399/400 (99%), Positives = 399/400 (99%)
Sequence:
GTGAACCAACGCCTACCTGTCACCGTGCTGTCCGGCTTTCTCGGCGCCGGCAAGAGCACGCTGCTCAACCAT
GTGCTGAAGAACCGCGAGAACCGCCGGGTTGCGGTGATCGTCAACGATATGAGTGAAATCAATATCGATGGC
AGCGAAGTCCAGCGCGATGTCAGCCTGAACCGCGCTGAAGAGCGCCTGGTGGAGATGAGCAACGGCTGTATC
TGCTGCACCCTGCGCGAAGACCTGCTGGAAGAGGTCGGCCGTCTCGCCCGGGAAGGCCGCTTCGACTACCTG
CTGATCGAGTCCACCGGGATTTCCGAACCGATGCCGGTGGCCGAGACCTTCACCTTCCGCGACGAGCTGGAC
CGCAGCCTGTCCGACGTGGCGCGACTGGATACCATGGTCACGGTGGTCGACGGGATGAATTTCCTCCGCGAC
TACCAGGAGGCCGCCAGCCTGGCCAGCCGTGGCGAAACCCTCGGTGAGGAGGATCAGCGCTCGATCACCGAC
CTGCTGATCGACCAGGTCGAATTCGCCGATGTGATCCTGGTCAGCAAGATCGACCTGATCTCCAGCGAGCAG
CGCGAGGAACTGCTGGCGATCCTGCGCCAGCTCAATGCCGAGGCGGAGATCCTGCCGATGGTGATGGGTCAG
GTGCCGCTGGCGAAGATCCTCGATACCGGTCGCTTCGATTTCGATCGCGCGGCGTCCGCGCCGGGCTGGCTG
AAGGAACTGCGCGGCGAGCACCTGCCGGAAACCGAGGAATATGGCATCGCCTCCATGGCCTACCGGGCGCGC
CGTCCGTTCCACCCCGCGCGCTTCCACGCCTTCCTGCACAATCCGCTGAAGCAGGGGCGGCTGCTGCGCTCC
AAGGGCTTCTTCTGGCTCGCCAGCCGGCCCCGCGAGGCTGGCAGCTGGTCGCAGGCCGGCGGCCTGATGCGC
TACGGCCTGGCGGGCCGCTGGTGGCGCTTCGTGCCGACCGGACAGTGGCCACAGGACGAAGAGGGCCTGCGG
GCGATCATGCGGCACTGGGAGGAAGGCGTCGGCGACTGTCGCCAGGAGCTGGTTTTCATCGGCCAGAACCTG
GACTTCACGGCCCTGCGCGCAGCCCTCGATGCTTGCCTGCTGGATGATGCCGAGATGAACCTGGGCATTCCG
GGCTGGCAGGGCCTGGACGACCCCTTCGAGGACTGGGGGCACGCCGCATGA
Translation:
MNQRLPVTVLSGFLGAGKSTLLNHVLKNRENRRVAVIVNDMSEINIDGSEVQRDVSLNRAEERLVEMSNGCI
CCTLREDLLEEVGRLAREGRFDYLLIESTGISEPMPVAETFTFRDELDRSLSDVARLDTMVTVVDGMNFLRD
YQEAASLASRGETLGEEDQRSITDLLIDQVEFADVILVSKIDLISSEQREELLAILRQLNAEAEILPMVMGQ
VPLAKILDTGRFDFDRAASAPGWLKELRGEHLPETEEYGIASMAYRARRPFHPARFHAFLHNPLKQGRLLRS
KGFFWLASRPREAGSWSQAGGLMRYGLAGRWWRFVPTGQWPQDEEGLRAIMRHWEEGVGDCRQELVFIGQNL
DFTALRAALDACLLDDAEMNLGIPGWQGLDDPFEDWGHAA*
AnnotationID:1454GeneID:1445
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 07:07:27
Gene Name:
Confidence Code:3
GeneProduct:putative cobalamin synthesis protein/P47K family protein
Cell Localization:()
Synonyms:PA5535
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02492,COG0523
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70926.1|AE016736_9 (AE016794) CobW/P47K family protein [Pseudomonas putida KT2440]
          Length = 402

 Score =  631 bits (1628), Expect = e-180
 Identities = 311/400 (77%), Positives = 347/400 (86%)

>gb|AAO58945.1| (AE016876) cobalamin synthesis protein/P47K family protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 403

 Score =  609 bits (1570), Expect = e-173
 Identities = 295/396 (74%), Positives = 340/396 (85%)

>gb|AAN34280.1|AE014604_4 (AE014604) cobalamin synthesis protein/P47K family protein
           [Brucella suis 1330]
          Length = 400

 Score =  441 bits (1133), Expect = e-123
 Identities = 233/404 (57%), Positives = 287/404 (71%), Gaps = 8/404 (1%)






 
Structural Features:
pfam02492, cobW, Cobalamin synthesis protein/P47K. 
CD-Length = 328 residues, 100.0% aligned
Score =  376 bits (967), Expect = 2e-105
Identities = 172/371 (46%), Positives = 222/371 (59%), Gaps = 44/371 (11%)

COG0523, COG0523, Putative GTPases (G3E family) 
CD-Length = 323 residues,  99.7% aligned
Score =  325 bits (834), Expect = 6e-90
Identities = 150/375 (40%), Positives = 205/375 (54%), Gaps = 58/375 (15%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14353




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20037




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33317




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1445_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1445
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2609
                           PA5535_tr
                           translation of PA5535
                           400
                           99.75
                           99.75
                           0
                           2072.0
     

     
     
81731
                           gb|AAG08920.1|AE004966_2
                           (AE004966) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           400
                           99.50
                           99.75
                           0
                           2069.0
     

     
     
81732
                           gb|AAN70926.1|AE016736_9
                           (AE016794) CobW/P47K family protein [Pseudomonas putida KT2440]
                           402
                           77.11
                           86.31
                           2
                           1624.0
     

     
     
81733
                           gb|AAO58945.1|
                           (AE016876) cobalamin synthesis protein/P47K family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           403
                           73.44
                           84.86
                           3
                           1560.0
     

     
     
81737
                           emb|CAD36563.1|
                           (AJ490527) P44k [Rhodococcus erythropolis]
                           404
                           62.12
                           74.50
                           9
                           1277.0
     

     






      

          
GC ORFID: 44447How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5535Glimmer Score: 

          
Start: 5766377Stop: 5765175

          
Length: 1203


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5535 translation of PA5535Homolog Bit Score 802.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4168 (ORF: BLASTX 615.0), t_PA5535 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAACCAACGCCTACCTGTCACCGTGCTGTCCGGCTTTCTCGGCGCCGGCAAGAGCACGCTGCTCAACCAT 
GTGCTGAAGAACCGCGAGAACCGCCGGGTTGCGGTGATCGTCAACGATATGAGTGAAATCAATATCGATGGC 
AGCGAAGTCCAGCGCGATGTCAGCCTGAACCGCGCTGAAGAGCGCCTGGTGGAGATGAGCAACGGCTGTATC 
TGCTGCACCCTGCGCGAAGACCTGCTGGAAGAGGTCGGCCGTCTCGCCCGGGAAGGCCGCTTCGACTACCTG 
CTGATCGAGTCCACCGGGATTTCCGAACCGATGCCGGTGGCCGAGACCTTCACCTTCCGCGACGAGCTGGAC 
CGCAGCCTGTCCGACGTGGCGCGACTGGATACCATGGTCACGGTGGTCGACGGGATGAATTTCCTCCGCGAC 
TACCAGGAGGCCGCCAGCCTGGCCAGCCGTGGCGAAACCCTCGGTGAGGAGGATCAGCGCTCGATCACCGAC 
CTGCTGATCGACCAGGTCGAATTCGCCGATGTGATCCTGGTCAGCAAGATCGACCTGATCTCCAGCGAGCAG 
CGCGAGGAACTGCTGGCGATCCTGCGCCAGCTCAATGCCGAGGCGGAGATCCTGCCGATGGTGATGGGTCAG 
GTGCCGCTGGCGAAGATCCTCGATACCGGTCGCTTCGATTTCGATCGCGCGGCGTCCGCGCCGGGCTGGCTG 
AAGGAACTGCGCGGCGAGCACCTGCCGGAAACCGAGGAATATGGCATCGCCTCCATGGCCTACCGGGCGCGC 
CGTCCGTTCCACCCCGCGCGCTTCCACGCCTTCCTGCACAATCCGCTGAAGCAGGGGCGGCTGCTGCGCTCC 
AAGGGCTTCTTCTGGCTCGCCAGCCGGCCCCGCGAGGCTGGCAGCTGGTCGCAGGCCGGCGGCCTGATGCGC 
TACGGCCTGGCGGGCCGCTGGTGGCGCTTCGTGCCGACCGGACAGTGGCCACAGGACGAAGAGGGCCTGCGG 
GCGATCATGCGGCACTGGGAGGAAGGCGTCGGCGACTGTCGCCAGGAGCTGGTTTTCATCGGCCAGAACCTG 
GACTTCACGGCCCTGCGCGCAGCCCTCGATGCTTGCCTGCTGGATGATGCCGAGATGAACCTGGGCATTCCG 
GGCTGGCAGGGCCTGGACGACCCCTTCGAGGACTGGGGGCACGCCGCATGA