ViewGene

Locus Name:
GeneID:
Location:

GeneID:1444
TrivialName: PA14_03730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03730
PAO1 Ortholog Locus:PA0286
Sequence Length:1179
Protein Length:392
Start: 334920
Stop: 336098
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03675.1|AE004466_9 (AE004466) probable fatty acid desaturase [Pseudomonas aeruginosa PAO1]
Identities = 391/392 (99%), Positives = 391/392 (99%)
Sequence:
ATGTGGTTCAACGGTTTTCTCGACCTGTCGCCCTGGCAACTGGTGGCAGTTACCCTGGTGCTGACGCATATC
ACCATCGTCAGCGTGACCGTCTACCTGCATCGCTATTCCGCCCACCGTGCACTCGACCTGCACCCTGCGTTG
CAGCACTTCTTCCGTTTCTGGTTGTGGTTGACCACAGGGATGAACACGCGCGAATGGACCGCGATCCACCGT
AAGCACCATGCCAAGTGCGAGACCGTCGAGGATCCGCACAGCCCGGTGCACAAGGGCCTGTTCACCGTCCTG
CGCGCAGGCGCGGAGCTGTACAAGGCCGAGGCGAAGAACCAGGACACCCTGCGCATCTACGGCAAGAACTGC
CCGGACGACTGGATCGAGCGCAATCTCTACTCGCGCTTCCCGATCGGCGGCGTGGTGCTGATGGCGCTCATC
GACCTGGCCCTGTTCGGCGCCCTTGGCCTGACCGTCTGGGCCGTGCAGATGGCATGGATTCCGTTCTGGGCC
GCCGGCGTGGTCAACGGCCTCGGCCACGCGGTCGGCTATCGCAACTTCGAATGCCGCGACGCCGCCACCAAC
CTGGTGCCCTGGGGCATCCTCATCGGTGGCGAAGAGCTGCACAACAACCACCACACCTACCCGAACTCGGCC
AAGCTGTCGGTGAAGAAGTGGGAATTCGACCTGGGCTGGGCCTGGATCAAGCTGTTCAGTTTCCTGCGCCTG
GCCAGGGTCGCCCGGGTTGCGCCGATCGCCCATCGGGTCGAAGGCAAGCACAGCCTGGACATGGATACCGCC
ATGGCGATCCTCAACAACCGCTTCCAGATCATGGCGCAGTACCGCAAGCTGGTGATCGCGCCGTTGGTCAAA
CAGGAAGTGGCCAAGGCCGACGAGTCGGTGCGCCACCTGTTCCGCCGCGCCAAGCGCCTGCTGTCGCGCGAG
ACCAGCCTGCTGCAGGACCGCCACCATGTGCGCATCGACTCGATGCTCGCCCACAGCCAGGCGCTGAAGGTG
ATCTACGAGAAGCGCCTGGCGTTGCAGCAGATCTGGGCCAAGACCAGCGCCAACGGCCACGACATGCTGGCG
GCGATCAAGGACTGGGTGCATGAGGCGGAAGCCAGCGGTATCCAGTCGCTGAAGGAGTTCGCCGCGCAACTG
AAGACCTACTCGCTGCGTCCCGCCTGA
Translation:
MWFNGFLDLSPWQLVAVTLVLTHITIVSVTVYLHRYSAHRALDLHPALQHFFRFWLWLTTGMNTREWTAIHR
KHHAKCETVEDPHSPVHKGLFTVLRAGAELYKAEAKNQDTLRIYGKNCPDDWIERNLYSRFPIGGVVLMALI
DLALFGALGLTVWAVQMAWIPFWAAGVVNGLGHAVGYRNFECRDAATNLVPWGILIGGEELHNNHHTYPNSA
KLSVKKWEFDLGWAWIKLFSFLRLARVARVAPIAHRVEGKHSLDMDTAMAILNNRFQIMAQYRKLVIAPLVK
QEVAKADESVRHLFRRAKRLLSRETSLLQDRHHVRIDSMLAHSQALKVIYEKRLALQQIWAKTSANGHDMLA
AIKDWVHEAEASGIQSLKEFAAQLKTYSLRPA*
AnnotationID:1453GeneID:1444
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 06:06:33
Gene Name:
Confidence Code:3
GeneProduct:putative fatty acid desaturase
Cell Localization:()
Synonyms:PA0286
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:putative stearoyl-CoA desaturase
Functional Category Confidence Code:5
COGs:COG1398
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN65849.1|AE016213_5 (AE016774) fatty acid desaturase family protein [Pseudomonas putida
           KT2440]
          Length = 394

 Score =  704 bits (1816), Expect = 0.0
 Identities = 328/391 (83%), Positives = 364/391 (93%)

>gb|AAO53850.1| (AE016857) fatty acid desaturase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 412

 Score =  702 bits (1812), Expect = 0.0
 Identities = 330/391 (84%), Positives = 364/391 (93%)

>gb|AAA96021.1| (U37517) stearoyl-CoA desaturase [Azotobacter vinelandii]
          Length = 367

 Score =  560 bits (1444), Expect = e-159
 Identities = 263/347 (75%), Positives = 297/347 (85%)

Structural Features:
COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]
CD-Length = 289 residues,  90.3% aligned
Score =  316 bits (811), Expect = 3e-87
Identities = 107/261 (40%), Positives = 138/261 (52%), Gaps = 5/261 (1%)
Genomic Context:
Comment:
ReferenceID:2891
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20035
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33637
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1444_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1444

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2608 PA0286_tr translation of PA0286 392 99.74 99.74 0 2075.0
81719 gb|AAG03675.1|AE004466_9 (AE004466) probable fatty acid desaturase [Pseudomonas aeruginosa PAO1] 392 99.74 99.74 0 2075.0
81720 gb|AAN65849.1|AE016213_5 (AE016774) fatty acid desaturase family protein [Pseudomonas putida KT2440] 394 83.24 92.38 2 1816.0
81721 gb|AAO53850.1| (AE016857) fatty acid desaturase [Pseudomonas syringae pv. tomato str. DC3000] 412 80.09 88.34 20 1812.0
81722 gb|AAA96021.1| (U37517) stearoyl-CoA desaturase [Azotobacter vinelandii] 406 65.02 73.64 53 1434.0
GC ORFID: 44446How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0286Glimmer Score:
Start: 6136261Stop: 6137439
Length: 1179
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0286 translation of PA0286Homolog Bit Score 803.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3020 (ORF: BLASTX 697.0), t_PA0286 (ORF: GLIMMER)
GC ORF Sequence
ATGTGGTTCAACGGTTTTCTCGACCTGTCGCCCTGGCAACTGGTGGCAGTTACCCTGGTGCTGACGCATATC
ACCATCGTCAGCGTGACCGTCTACCTGCATCGCTATTCCGCCCACCGTGCACTCGACCTGCACCCTGCGTTG
CAGCACTTCTTCCGTTTCTGGTTGTGGTTGACCACAGGGATGAACACGCGCGAATGGACCGCGATCCACCGT
AAGCACCATGCCAAGTGCGAGACCGTCGAGGATCCGCACAGCCCGGTGCACAAGGGCCTGTTCACCGTCCTG
CGCGCAGGCGCGGAGCTGTACAAGGCCGAGGCGAAGAACCAGGACACCCTGCGCATCTACGGCAAGAACTGC
CCGGACGACTGGATCGAGCGCAATCTCTACTCGCGCTTCCCGATCGGCGGCGTGGTGCTGATGGCGCTCATC
GACCTGGCCCTGTTCGGCGCCCTTGGCCTGACCGTCTGGGCCGTGCAGATGGCATGGATTCCGTTCTGGGCC
GCCGGCGTGGTCAACGGCCTCGGCCACGCGGTCGGCTATCGCAACTTCGAATGCCGCGACGCCGCCACCAAC
CTGGTGCCCTGGGGCATCCTCATCGGTGGCGAAGAGCTGCACAACAACCACCACACCTACCCGAACTCGGCC
AAGCTGTCGGTGAAGAAGTGGGAATTCGACCTGGGCTGGGCCTGGATCAAGCTGTTCAGTTTCCTGCGCCTG
GCCAGGGTCGCCCGGGTTGCGCCGATCGCCCATCGGGTCGAAGGCAAGCACAGCCTGGACATGGATACCGCC
ATGGCGATCCTCAACAACCGCTTCCAGATCATGGCGCAGTACCGCAAGCTGGTGATCGCGCCGTTGGTCAAA
CAGGAAGTGGCCAAGGCCGACGAGTCGGTGCGCCACCTGTTCCGCCGCGCCAAGCGCCTGCTGTCGCGCGAG
ACCAGCCTGCTGCAGGACCGCCACCATGTGCGCATCGACTCGATGCTCGCCCACAGCCAGGCGCTGAAGGTG
ATCTACGAGAAGCGCCTGGCGTTGCAGCAGATCTGGGCCAAGACCAGCGCCAACGGCCACGACATGCTGGCG
GCGATCAAGGACTGGGTGCATGAGGCGGAAGCCAGCGGTATCCAGTCGCTGAAGGAGTTCGCCGCGCAACTG
AAGACCTACTCGCTGCGTCCCGCCTGA