ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1443

TrivialName: PA14_01180

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_01180

PAO1 Ortholog Locus: PA0097

Sequence Length: 1200

Protein Length: 399

Start: 115913

Stop: 117112

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03487.1|AE004448_6 (AE004448) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 392/399 (98%), Positives = 392/399 (98%)

Sequence:

ATGGCGCCTACCTCTCCAGCCGCTCCACCGGGGTCAACCGGATCAAGGGCGGTTCGGTGCAGATCAACTGAG
CGCGGCGGGCCGGACATGGAACTGTTGAACGCCACCCCGCTGGCCGCCGCCTACAACCAGGGGCTCGACGCC
GAAGGCCGGGAGTCGCTGGTGGTGATCGCCAAGGGCAGTTTCGACCTGCCGCTGGACGGTCGCGAGGCGCGC
CTGCTGGACGAGCAGCAGGCGCTGCTGATGGTCGATGAATTCTATGGCGAGCCGGGGCTTTCCGCGCCGCGC
CGGGAGTGCGAGTTCGTTCCCTTCAAGCCGTTCTGCGATGTGCTGGTGCTGGGCAGCGCCCAGGCGCCCGGC
GGGCGGCCGGTACAGCAGTTGACCGCGGGCATCCGCGTCGGCCGGGTGAGCAAGGCGCTGGCGGTGCATGGG
CCGCGCCAGTGGGAACCGGGATTGCTCGGTGCCGGCGCGGGCGTCGCGCAGCCGTTCCAGCGCCAGGACATT
TCCTACGCCAGTGCCTTCGGCGGCAGCCATGCCTCGCCGGACAACCCTGATTTCATGGATTGCTACATGGCC
AATCCGGCCGGATGTGGCTGGTTTCCGCGCAGCGCCGACACCGCCGAGATCGTCGGCACGCCGATGCCGGCC
ACGGAAAAACTCGGCGAGCCGGTGGACAGCCCCCACGGCCGCTTCACGCCGATGGCGCTCGGCCCGCTCGGT
CGCCACTGGCAGGCCCGGGTCGGCTTTGCCGGCCGCTACGACGACGCCTGGCTGGCCGAGCGCTTCCCGTTC
CTGCCCGCCGATTTCGACGAGCGTTACTTCCAGTCCGCGCCGGCCGACCAGTGGACCGACCATCTGCGCGGC
GGCGAGGAGGTCCTGCTGCTCAACCTCACCGGCGAGGAGCGCGCGGCCTTCCGCGTGCCGCGCAGGGAGGTG
CCGGTTACCTtCTTcCTGAAAAAGGGTGGCCACGAAACCGCGCAGGCACGGATCGATACCCTGCTGGTGGAC
TGCGACGCCCGTCGCGTGGAAGTCACCTGGCGCATTCGCCGGCCGTTGAAGCGCAACCTGTTCGAGATCGCC
CAGGTGCTGGTCGGCAGCAAGTCCGCCGCCTGGTGGCGCGCCCGCGAGCTGGGCAAGGACTACTACCCCTCG
CTTGCCGCGTTGGCACGCAGCCGCCAGGCCGAGGAGGACGAGGCATGA

Translation:

MAPTSPAAPPGSTGSRAVRCRSTERGGPDMELLNATPLAAAYNQGLDAEGRESLVVIAKGSFDLPLDGREAR
LLDEQQALLMVDEFYGEPGLSAPRRECEFVPFKPFCDVLVLGSAQAPGGRPVQQLTAGIRVGRVSKALAVHG
PRQWEPGLLGAGAGVAQPFQRQDISYASAFGGSHASPDNPDFMDCYMANPAGCGWFPRSADTAEIVGTPMPA
TEKLGEPVDSPHGRFTPMALGPLGRHWQARVGFAGRYDDAWLAERFPFLPADFDERYFQSAPADQWTDHLRG
GEEVLLLNLTGEERAAFRVPRREVPVTFFLKKGGHETAQARIDTLLVDCDARRVEVTWRIRRPLKRNLFEIA
QVLVGSKSAAWWRARELGKDYYPSLAALARSRQAEEDEA*

AnnotationID:1452 GeneID:1443

AnnotatorUID: diggins

Modification Date/Time: 2005-03-22 18:06:53

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA0097

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:2889

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20033

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33445

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1443_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1443

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

81718 gb|AAG03487.1|AE004448_6 (AE004448) hypothetical protein PA0097 [Pseudomonas aeruginosa PAO1] 399 98.24 98.24 0 2078.0

2607 PA0097_tr translation of PA0097 399 97.99 98.24 0 2074.0

GC ORFID: `44445`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0097`	Glimmer Score:
Start: `5917252`	Stop: `5918451`
Length: `1200`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0097 translation of PA0097`	Homolog Bit Score `803.0`
Other Homologs: `t_PA0097 (ORF: GLIMMER)`
GC ORF Sequence
ATGGCGCCTACCTCTCCAGCCGCTCCACCGGGGTCAACCGGATCAAGGGCGGTTCGGTGCAGATCAACTGAG CGCGGCGGGCCGGACATGGAACTGTTGAACGCCACCCCGCTGGCCGCCGCCTACAACCAGGGGCTCGACGCC GAAGGCCGGGAGTCGCTGGTGGTGATCGCCAAGGGCAGTTTCGACCTGCCGCTGGACGGTCGCGAGGCGCGC CTGCTGGACGAGCAGCAGGCGCTGCTGATGGTCGATGAATTCTATGGCGAGCCGGGGCTTTCCGCGCCGCGC CGGGAGTGCGAGTTCGTTCCCTTCAAGCCGTTCTGCGATGTGCTGGTGCTGGGCAGCGCCCAGGCGCCCGGC GGGCGGCCGGTACAGCAGTTGACCGCGGGCATCCGCGTCGGCCGGGTGAGCAAGGCGCTGGCGGTGCATGGG CCGCGCCAGTGGGAACCGGGATTGCTCGGTGCCGGCGCGGGCGTCGCGCAGCCGTTCCAGCGCCAGGACATT TCCTACGCCAGTGCCTTCGGCGGCAGCCATGCCTCGCCGGACAACCCTGATTTCATGGATTGCTACATGGCC AATCCGGCCGGATGTGGCTGGTTTCCGCGCAGCGCCGACACCGCCGAGATCGTCGGCACGCCGATGCCGGCC ACGGAAAAACTCGGCGAGCCGGTGGACAGCCCCCACGGCCGCTTCACGCCGATGGCGCTCGGCCCGCTCGGT CGCCACTGGCAGGCCCGGGTCGGCTTTGCCGGCCGCTACGACGACGCCTGGCTGGCCGAGCGCTTCCCGTTC CTGCCCGCCGATTTCGACGAGCGTTACTTCCAGTCCGCGCCGGCCGACCAGTGGACCGACCATCTGCGCGGC GGCGAGGAGGTCCTGCTGCTCAACCTCACCGGCGAGGAGCGCGCGGCCTTCCGCGTGCCGCGCAGGGAGGTG CCGGTTACCTtCTTcCTGAAAAAGGGTGGCCACGAAACCGCGCAGGCACGGATCGATACCCTGCTGGTGGAC TGCGACGCCCGTCGCGTGGAAGTCACCTGGCGCATTCGCCGGCCGTTGAAGCGCAACCTGTTCGAGATCGCC CAGGTGCTGGTCGGCAGCAAGTCCGCCGCCTGGTGGCGCGCCCGCGAGCTGGGCAAGGACTACTACCCCTCG CTTGCCGCGTTGGCACGCAGCCGCCAGGCCGAGGAGGACGAGGCATGA