ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1441

TrivialName: PA14_45180

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_45180

PAO1 Ortholog Locus: PA1488

Sequence Length: 1239

Protein Length: 412

Start: 4028906

Stop: 4030144

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04877.1|AE004577_12 (AE004577) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 409/412 (99%), Positives = 409/412 (99%)

Sequence:

ATGAGCATCACTGAACAGGTCGACGTCGCCATCGTCGGCAGCGGTCCCGCCGGATTGGCGGCCGCCATCGAA
CTACGCCGCCAGGGCGTCGCCCGGGTCTGCGTGCTGGAGCGCGACGGCGAGGCCGGCGGTATACCCCGGCAT
TGCGCGCATCCGCCGTTCGGCCTGCGCGAGCACGGCCGCCTGTTGACCGGCCCGGCCTACGCGCTGCGTAAC
GTCGAACAGGCTGAACGGGCCGGGGTGGATATCCGCCTGCGCCATAGCGTGGTCGCTCTCGCCGCCGCCGGT
CTGCTGCAACTGGCCACCCCCGAAGGCCCGCGCAGTCTGCGCGCGACACGCGTGCTGCTGGCCACCGGCGCA
CGCGAGACGCCGCGCTCGGCGCGCCTGCTGGGCGGCGACCGGCCACTGGGCGTGATCAATACCGGCGCGCTG
CAAGCCTATCTCTATCTGCAAGGCCTGAAGCCGTTCGAACGGCCGCTGATCGTCGGCACCGAGCTGGTCAGC
CTGTCCGCCGTGATGAGCTGCCGGCGTGCCGGCATCCGCCCGGTGGCCATGCTCGAACGCAACGCACGGGCC
ACCGCGCGTTGGCCGCTATCGTTGTTTCCCAGGCTGTGCGGAGTGCCGATGCACTTCTCCAGCGAGCTGCTG
GAGATCGAAGGTCGCGGCCGGGTCGAGGCGGCGCGGGTACGCCTGGGCGACGGGCGGGTCGAACGGATCGCC
TGCGACGGCATCCTCCTCAGCGGACGCTTCGTTCCCGAATCGAGCCTGGTCCGCCTCAGCCACCTGGAACTG
GACCCGGCCAGCGGCGGCCCGCGCATCGATCAGTTCGGCCGCTGCTCCGACCCCGCCTATTTCGCCGCCGGC
AACCTGCTCCGGCCGATCGAGACCGCCGGCTGGTCGTTCCGCGAGGGACGAAGGATCGCCGGCCTGCTGGCC
GCCGACCTGCGGGCCGAACTGCCGGTCGCCGCGCCCGGTATCGCCATCGATTGCAGCGGTCCGCTCAAGCTG
TGCGTGCCGCAGCGGCTGCTGGACGATCCGACACCCGGCCTGGCGCATCTACAGCTACGCGTAAGCGAGGCC
GCCAGCGGACGCCTGCGGATACTGGCCGATGGTCGCCCGGTGTGGGAACGCGCCCTGTCCTGCCTGCCGGAA
CGCCGCCTGCTGGTGCCGCTGGCCGCCCTGCGCCTACCGCCGGACACCCGGCGCCTGGAAGTCGCCTTCCTC
ACCTCCGGCCACTGA

Translation:

MSITEQVDVAIVGSGPAGLAAAIELRRQGVARVCVLERDGEAGGIPRHCAHPPFGLREHGRLLTGPAYALRN
VEQAERAGVDIRLRHSVVALAAAGLLQLATPEGPRSLRATRVLLATGARETPRSARLLGGDRPLGVINTGAL
QAYLYLQGLKPFERPLIVGTELVSLSAVMSCRRAGIRPVAMLERNARATARWPLSLFPRLCGVPMHFSSELL
EIEGRGRVEAARVRLGDGRVERIACDGILLSGRFVPESSLVRLSHLELDPASGGPRIDQFGRCSDPAYFAAG
NLLRPIETAGWSFREGRRIAGLLAADLRAELPVAAPGIAIDCSGPLKLCVPQRLLDDPTPGLAHLQLRVSEA
ASGRLRILADGRPVWERALSCLPERRLLVPLAALRLPPDTRRLEVAFLTSGH*

AnnotationID:1450 GeneID:1441

AnnotatorUID: diggins

Modification Date/Time: 2005-02-24 18:06:50

Gene Name:

Confidence Code: 3

GeneProduct: putative oxidoreductase

Cell Localization: ()

Synonyms: PA1488

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (20) Putative enzymes

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: pfam00070

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase. 
CD-Length = 288 residues,  95.8% aligned
Score =  112 bits (280), Expect = 1e-25
Identities = 83/289 (28%), Positives = 134/289 (46%), Gaps = 21/289 (7%)

Genomic Context:

Comment:

ReferenceID:2885

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20029

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37341

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1441_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1441

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2604 PA1488_tr translation of PA1488 412 99.27 99.27 0 2075.0

81692 gb|AAG04877.1|AE004577_12 (AE004577) hypothetical protein PA1488 [Pseudomonas aeruginosa PAO1] 412 99.27 99.27 0 2075.0

81693 emb|CAB88983.1| (AL939130) putative oxidoreductase. [Streptomyces coelicolor A3(2)] 428 38.78 51.16 28 588.0

GC ORFID: `44443`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1488`	Glimmer Score:
Start: `925003`	Stop: `923765`
Length: `1239`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1488 translation of PA1488`	Homolog Bit Score `803.0`
Other Homologs: `t_PA1488 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCATCACTGAACAGGTCGACGTCGCCATCGTCGGCAGCGGTCCCGCCGGATTGGCGGCCGCCATCGAA CTACGCCGCCAGGGCGTCGCCCGGGTCTGCGTGCTGGAGCGCGACGGCGAGGCCGGCGGTATACCCCGGCAT TGCGCGCATCCGCCGTTCGGCCTGCGCGAGCACGGCCGCCTGTTGACCGGCCCGGCCTACGCGCTGCGTAAC GTCGAACAGGCTGAACGGGCCGGGGTGGATATCCGCCTGCGCCATAGCGTGGTCGCTCTCGCCGCCGCCGGT CTGCTGCAACTGGCCACCCCCGAAGGCCCGCGCAGTCTGCGCGCGACACGCGTGCTGCTGGCCACCGGCGCA CGCGAGACGCCGCGCTCGGCGCGCCTGCTGGGCGGCGACCGGCCACTGGGCGTGATCAATACCGGCGCGCTG CAAGCCTATCTCTATCTGCAAGGCCTGAAGCCGTTCGAACGGCCGCTGATCGTCGGCACCGAGCTGGTCAGC CTGTCCGCCGTGATGAGCTGCCGGCGTGCCGGCATCCGCCCGGTGGCCATGCTCGAACGCAACGCACGGGCC ACCGCGCGTTGGCCGCTATCGTTGTTTCCCAGGCTGTGCGGAGTGCCGATGCACTTCTCCAGCGAGCTGCTG GAGATCGAAGGTCGCGGCCGGGTCGAGGCGGCGCGGGTACGCCTGGGCGACGGGCGGGTCGAACGGATCGCC TGCGACGGCATCCTCCTCAGCGGACGCTTCGTTCCCGAATCGAGCCTGGTCCGCCTCAGCCACCTGGAACTG GACCCGGCCAGCGGCGGCCCGCGCATCGATCAGTTCGGCCGCTGCTCCGACCCCGCCTATTTCGCCGCCGGC AACCTGCTCCGGCCGATCGAGACCGCCGGCTGGTCGTTCCGCGAGGGACGAAGGATCGCCGGCCTGCTGGCC GCCGACCTGCGGGCCGAACTGCCGGTCGCCGCGCCCGGTATCGCCATCGATTGCAGCGGTCCGCTCAAGCTG TGCGTGCCGCAGCGGCTGCTGGACGATCCGACACCCGGCCTGGCGCATCTACAGCTACGCGTAAGCGAGGCC GCCAGCGGACGCCTGCGGATACTGGCCGATGGTCGCCCGGTGTGGGAACGCGCCCTGTCCTGCCTGCCGGAA CGCCGCCTGCTGGTGCCGCTGGCCGCCCTGCGCCTACCGCCGGACACCCGGCGCCTGGAAGTCGCCTTCCTC ACCTCCGGCCACTGA