ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1440

TrivialName: PA14_60760

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_60760

PAO1 Ortholog Locus: PA4591

Sequence Length: 1278

Protein Length: 425

Start: 5415532

Stop: 5414255

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07979.1|AE004873_1 (AE004873) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 422/425 (99%), Positives = 422/425 (99%)

Sequence:

ATGACCACTGACCGGTTTTCCTTCCTGCGCCGGCCCGCATTGCCGCTCGCCGCCGGCCTGGCGGTTGTCGCG
GCGCTGGCCTGGCTGGTCCTCGCCGGCGGCACCGCGAAACGCACGGAAGGGGAGCGCTGGGTCGCCGTACGG
GCGGCCCCGCTGGTGCATCAGATCGGCCTGGTCGGACGCCTGGAACCGGGGCGCGTGGTGACCCTGGCGGCG
CCCTTCGCCGGCAATGTCGAGGCGCTGCTGGTGGAGCCGGGACAGCGGGTCGCGGAAGGACAGGAGCTGCTG
CGCATGGACACCCGCGAGATCGCCGTGCAGGTGCGCGAGGCACAGTCGGCGTTGCTCAAGGCCCGTCGCACC
CTGCAGGACCTGCGCGACTGGGAGCGTGGCGAGGACATGGCGCGGGTCCGTCGTGCCCTGCGCAGCGCGCAG
CTGGCGCAGAGCAGCACCGAGCGCAAGTTGCGCGAGACCCGCGAGCTGTTCCAGCGCGGGATCGTCCCGCGC
AACGAACTCGACGATCTCGAACAACAGGCCAGCCAGCAGCGCATGGACCTGGAGGCGGCCCGGCGGGAAGTG
GAGTCGACCCGCGCCAAGGGGCAGGGCGAGAATCGCCAGATCGCCGAAATGGACCTGGCCAACGCCAGCGTG
AAATACGAGACGCTGCAGGCCCAGCTGGATGGCCGTACGGTGCGCGCGCCCTTTGCCGGTATCGTCGTCGCG
GCGCCCGGCCTGGCTGGCGAGCAGGGCAGCCGCGAACCGGTGCAGGCCGGTAGCAAGCTGGGGCAGGGCCAG
GCGTTGTTCGGCCTGGCCAGCGTCGAGCGGCTGAAGGTATCTGCGAAGGTTTCCGAACTGGATATCAACCAG
TTACGCGAAGGGCAGGCGGTGGAAATCAGTGGCGACGGCTTCGAGGGCACCACGCTGGCGGGCGTCATCGCC
GCCCTCGGTGGTCAGGCTCTGCCCGGCATGGCCCAGGGAGGTAGCCCGCAGTTCGAGGTGACGGTATCGGTA
GCGCCGCTCGATCCCCGCCAGTTGCAGAAGATTCGTCTGGGAATGAGCGCAAAGCTGACGGTCACCACCTAT
CGCAACGAACAGGCCATCGTCGTGCCGCCGGAGGCGATACGCCACGAGGGTGACCGGCTGTTCGTGGACTTT
CGCCAGGCTCCCGGCGCCAGCGTGATGGCGCAACAGGTCAAGATCGGACGCTCCACGCCGGAGGGCGTGGAG
GTGTTCGAGTTGCAGCCGGGTCTCGTTCGCGTGCCGTCATCGTCCGACCGATAG

Translation:

MTTDRFSFLRRPALPLAAGLAVVAALAWLVLAGGTAKRTEGERWVAVRAAPLVHQIGLVGRLEPGRVVTLAA
PFAGNVEALLVEPGQRVAEGQELLRMDTREIAVQVREAQSALLKARRTLQDLRDWERGEDMARVRRALRSAQ
LAQSSTERKLRETRELFQRGIVPRNELDDLEQQASQQRMDLEAARREVESTRAKGQGENRQIAEMDLANASV
KYETLQAQLDGRTVRAPFAGIVVAAPGLAGEQGSREPVQAGSKLGQGQALFGLASVERLKVSAKVSELDINQ
LREGQAVEISGDGFEGTTLAGVIAALGGQALPGMAQGGSPQFEVTVSVAPLDPRQLQKIRLGMSAKLTVTTY
RNEQAIVVPPEAIRHEGDRLFVDFRQAPGASVMAQQVKIGRSTPEGVEVFELQPGLVRVPSSSDR*

AnnotationID:1449 GeneID:1440

AnnotatorUID: diggins

Modification Date/Time: 2005-05-06 06:06:30

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>emb|CAD18614.1| (AL646085) PUTATIVE ATP-BINDING ABC TRANSPORTER PROTEIN [Ralstonia
           solanacearum]
          Length = 417

 Score =  133 bits (334), Expect = 2e-30
 Identities = 96/376 (25%), Positives = 177/376 (47%), Gaps = 7/376 (1%)

>gb|AAO91303.1| (AE016965) lipoprotein, putative [Coxiella burnetii RSA 493]
          Length = 391

 Score =  105 bits (262), Expect = 5e-22
 Identities = 86/395 (21%), Positives = 166/395 (42%), Gaps = 30/395 (7%)

Structural Features:

Genomic Context:

Comment:

ReferenceID:2883

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20027

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31630

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1440_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1440

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2603 PA4591_tr translation of PA4591 425 99.29 99.29 0 2076.0

81690 gb|AAG07979.1|AE004873_1 (AE004873) hypothetical protein PA4591 [Pseudomonas aeruginosa PAO1] 425 99.29 99.29 0 2076.0

81691 emb|CAE15019.1| (BX571867) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] 431 42.69 61.71 12 834.0

GC ORFID: `44442`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4591`	Glimmer Score:
Start: `4679212`	Stop: `4677935`
Length: `1278`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA4591 translation of PA4591`	Homolog Bit Score `804.0`
Other Homologs: `t_PA4591 (ORF: GLIMMER)`
GC ORF Sequence
ATGACCACTGACCGGTTTTCCTTCCTGCGCCGGCCCGCATTGCCGCTCGCCGCCGGCCTGGCGGTTGTCGCG GCGCTGGCCTGGCTGGTCCTCGCCGGCGGCACCGCGAAACGCACGGAAGGGGAGCGCTGGGTCGCCGTACGG GCGGCCCCGCTGGTGCATCAGATCGGCCTGGTCGGACGCCTGGAACCGGGGCGCGTGGTGACCCTGGCGGCG CCCTTCGCCGGCAATGTCGAGGCGCTGCTGGTGGAGCCGGGACAGCGGGTCGCGGAAGGACAGGAGCTGCTG CGCATGGACACCCGCGAGATCGCCGTGCAGGTGCGCGAGGCACAGTCGGCGTTGCTCAAGGCCCGTCGCACC CTGCAGGACCTGCGCGACTGGGAGCGTGGCGAGGACATGGCGCGGGTCCGTCGTGCCCTGCGCAGCGCGCAG CTGGCGCAGAGCAGCACCGAGCGCAAGTTGCGCGAGACCCGCGAGCTGTTCCAGCGCGGGATCGTCCCGCGC AACGAACTCGACGATCTCGAACAACAGGCCAGCCAGCAGCGCATGGACCTGGAGGCGGCCCGGCGGGAAGTG GAGTCGACCCGCGCCAAGGGGCAGGGCGAGAATCGCCAGATCGCCGAAATGGACCTGGCCAACGCCAGCGTG AAATACGAGACGCTGCAGGCCCAGCTGGATGGCCGTACGGTGCGCGCGCCCTTTGCCGGTATCGTCGTCGCG GCGCCCGGCCTGGCTGGCGAGCAGGGCAGCCGCGAACCGGTGCAGGCCGGTAGCAAGCTGGGGCAGGGCCAG GCGTTGTTCGGCCTGGCCAGCGTCGAGCGGCTGAAGGTATCTGCGAAGGTTTCCGAACTGGATATCAACCAG TTACGCGAAGGGCAGGCGGTGGAAATCAGTGGCGACGGCTTCGAGGGCACCACGCTGGCGGGCGTCATCGCC GCCCTCGGTGGTCAGGCTCTGCCCGGCATGGCCCAGGGAGGTAGCCCGCAGTTCGAGGTGACGGTATCGGTA GCGCCGCTCGATCCCCGCCAGTTGCAGAAGATTCGTCTGGGAATGAGCGCAAAGCTGACGGTCACCACCTAT CGCAACGAACAGGCCATCGTCGTGCCGCCGGAGGCGATACGCCACGAGGGTGACCGGCTGTTCGTGGACTTT CGCCAGGCTCCCGGCGCCAGCGTGATGGCGCAACAGGTCAAGATCGGACGCTCCACGCCGGAGGGCGTGGAG GTGTTCGAGTTGCAGCCGGGTCTCGTTCGCGTGCCGTCATCGTCCGACCGATAG