ViewGene
Locus Name:
GeneID:
Location:

GeneID:144
TrivialName: PA14_42980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42980
PAO1 Ortholog Locus:PA1662
Sequence Length:2634
Protein Length:877
Start: 3824064
Stop: 3821431
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05051.1|AE004594_3 (AE004594) probable ClpA/B-type protease [Pseudomonas aeruginosa PAO1]
Identities = 874/877 (99%), Positives = 875/877 (99%)
Sequence:
ATGAGCATGATCAACGTAGACCTGCAACAACTGATTCAGGCGCTGGATGCCGACACCCGGCGCGACCTCGAA
GGCTCGGCCGAGCGCTGCGTAGCCCGTGGCGGCAGCAAGGTACTGGTGGAGGACCTGTTGCTGGGCCTGCTG
GAGCGTCCCCAGGGACTGCTGGCGCGCGCCCTGCAGGATGCCGCGGTGGACGCCGGCGAACTCAACGCCGCG
TTGCAAGCGCGGGGCGAGCACAGCGCCTCGCGCAATCCGGTGTTCGCGCCCGAGCTGGTGCAGTGGCTGCAG
GATGCGCTGTTGCTGGCCAACCTCGAACTGGGCCGTAGCCAGATCGACCAGGCGGCATTGATCCTGGCCCTG
CTACGCAACCCGTTGCGCTATGCCGGCAGCCGCTACCAGCCGCTGCTGGCGCGGCTCGACATCGAGCGGTTG
AAGGATTTCGCGCTCTCGCAGCCGCTGGAGGGCGCGCCCAGCGGCAAGCCGGGCGGCGGCGAGTCCCTGTTG
CAGCGTTTCACCCACAACCTTACCCAGCAGGCGCGCGACGGCAAGCTCGATCCGGTGCTCTGTCGCGACGGG
GCTATTCGCCAGATGGTCGACATCCTGGCCCGTCGGCGGAAAAACAACCCCATCGTGGTCGGCGAGGCTGGC
GTCGGCAAGACCGCCATCGTCGAAGGCCTGGCCTCGCGGATCGCCGCAGGGGAAGTGCCGCCGGCGCTGAGG
GACGTCGAGCTGTTGTCCCTCGACATGGGCCTGTTGCAGGCCGGTGCCAGCGTGAAGGGCGAGTTCGAGCGG
CGCCTGAAAGGCGTCATCGACGAAGTGAAGGCAGCGCCCAGGCCGACCATCCTGTTCATCGACGAGGCCCAT
ACGCTGATCGGCGCGGGCGGTCAGGCCGGCGGCTCGGATGCCGCCAACCTGCTCAAGCCGGCCCTGGCACGT
GGCGAGTTGCGCACCATCGCGGCGACGACCTGGGCCGAATACAAGAAGTATTTCGAGAAGGACCCGGCGCTG
GCCCGGCGCTTCCAGCCCGTGCAGTTGCATGAGCCGAGCGTTGCCGAGGCGGTGACGATCCTGCGTGGCCTG
GCCCGGGTTTACGAGGAAAGCCACGGTATCTACCTGCGCGACGACGCGGTGGTGGCCGCCGCCGAACTGTCC
GCCCGCTACCTGGCGGGTCGCCAGTTGCCGGACAAGGCCGTCGACGTCCTCGACACCGCCTGTGCGCGGGTG
CGCATCAGCCTGGCGGCGGCGCCGGAGAGCCTCGAGCGCCTGCGCGGCGAGCTGGCCGAAGGTGAGCGCCAG
CGCCAGGCCCTGCGCCGCGATGCCGAGGCAGGCCTGCCGATCGACCACGATGCCCTGCAGGCGCTGGAGGAG
CGTCTGGCCCAGGCGGAAAGCGAGCGGCACGTACAGGAGGACCAGTGGAGCCGCCAGCGCGAACTCGCCGAG
CGCCTGCTCGCCCTGCGCCAGCAATTGGCCAGGGCCCGCGAGGCGAACCGGGAAGAGCAGGGCAGCGAGGCG
GATGCGGAGGCTTTCCCGGCCGACGAGCATGGCGGTGTCGAAGCCCTGGAAAAGGCCCTTCACGAAACCCGC
CAGGCGCTCGCCGATGCCCAGGCCCAGGGGCGGCTGGTCAGCTTCGAGGTCTGCCCGCGCCTGGTTGCCGAG
GTGATCGGCGCCTGGACCGGCGTACCGGTGGAACAACTGGCGCGGGAACACAACGCCAAGGTGATGGGGTTC
GCTGACGACCTGCGGGCGCGGATCCGTGGCCAGGAACAGGCGGTCAGCGCCCTGGACCGCGCGATGCGCGCC
ACCGCGGCCGGGCTGAACAAGCCCGATGCGCCGGTCGGCGTGTTCCTGCTGGTGGGCCCGAGCGGGGTGGGC
AAGACCGAGACCGCGCTGGCGCTGGCCGACCTGCTGTATGGCGGCGAGCGTTTCATCACCACCATCAACATG
TCCGAGTTCCAGGAGAAGCACACCGTCTCGCGCCTGATCGGCGCGCCGCCCGGCTATGTCGGCTATGGCGAG
GGTGGCATGCTCACCGAGGCGGTACGCCAGAAGCCCTATTCGGTGATATTGCTGGACGAGGTGGAGAAGGCC
GATCCGGACGTGCTCAACCTGTTCTACCAGATCTTCGACAAGGGCGTGGCCAACGATGGCGAAGGGCGCGAG
ATCGATTTCCGCAATACCTTGATCCTGATGACCTCCAACCTCGCCAGCGAGCACATCGCCGCGCTTTGCCAG
GACGGCGCGCGGCCTTCCGCCGAACTCCTGGAGGAAACCATCCGGCCGGCGCTCAGCCGGCATTTCAAGCCG
GCGCTGCTGGCGCGCATGCGCGTGGTGCCTTACTACCCGGTGGGCGGCCCGGTACTGCGCGAGCTGATCGAG
ATCAAGCTGGAACGCCTCGGCGAGCGTCTGGCGCGCCGTCAACTGGCTTTCGACTACAGCCAGGCGCTGGTG
GACCACCTGGCCGAGCGTTGCACCCAGAGCGACAGCGGCGCACGGTTGATCGACCACCTGCTGGACACGCAC
CTGCTGCCGCTGGTGGCCGACCGTTTGCTGGAAGCGATGGCGCGCGACGAGCGTCTCGAGCGGGTCCATGCG
ACGCTGGGCGAGCACGGCCGCGTGCTCTGCGAGTTCGCCTGA
Translation:
MSMINVDLQQLIQALDADTRRDLEGSAERCVARGGSKVLVEDLLLGLLERPQGLLARALQDAAVDAGELNAA
LQARGEHSASRNPVFAPELVQWLQDALLLANLELGRSQIDQAALILALLRNPLRYAGSRYQPLLARLDIERL
KDFALSQPLEGAPSGKPGGGESLLQRFTHNLTQQARDGKLDPVLCRDGAIRQMVDILARRRKNNPIVVGEAG
VGKTAIVEGLASRIAAGEVPPALRDVELLSLDMGLLQAGASVKGEFERRLKGVIDEVKAAPRPTILFIDEAH
TLIGAGGQAGGSDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALARRFQPVQLHEPSVAEAVTILRGL
ARVYEESHGIYLRDDAVVAAAELSARYLAGRQLPDKAVDVLDTACARVRISLAAAPESLERLRGELAEGERQ
RQALRRDAEAGLPIDHDALQALEERLAQAESERHVQEDQWSRQRELAERLLALRQQLARAREANREEQGSEA
DAEAFPADEHGGVEALEKALHETRQALADAQAQGRLVSFEVCPRLVAEVIGAWTGVPVEQLAREHNAKVMGF
ADDLRARIRGQEQAVSALDRAMRATAAGLNKPDAPVGVFLLVGPSGVGKTETALALADLLYGGERFITTINM
SEFQEKHTVSRLIGAPPGYVGYGEGGMLTEAVRQKPYSVILLDEVEKADPDVLNLFYQIFDKGVANDGEGRE
IDFRNTLILMTSNLASEHIAALCQDGARPSAELLEETIRPALSRHFKPALLARMRVVPYYPVGGPVLRELIE
IKLERLGERLARRQLAFDYSQALVDHLAERCTQSDSGARLIDHLLDTHLLPLVADRLLEAMARDERLERVHA
TLGEHGRVLCEFA*
AnnotationID:154GeneID:144
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 17:05:39
Gene Name:
Confidence Code:3
GeneProduct:putative ClpA/B-type protease
Cell Localization:()
Synonyms:PA1662
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(9) Chaperones & heat shock proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0542
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58847.1| (AE016875) clpB protein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 882

 Score = 1416 bits (3666), Expect = 0.0
 Identities = 744/884 (84%), Positives = 796/884 (90%), Gaps = 11/884 (1%)

>dbj|BAC59655.1| (AP005077) putative ClpA/B-type protease [Vibrio parahaemolyticus]
          Length = 890

 Score =  822 bits (2124), Expect = 0.0
 Identities = 456/894 (51%), Positives = 600/894 (67%), Gaps = 23/894 (2%)

>emb|CAD17900.1| (AL646080) PUTATIVE CLPA/B-TYPE CHAPERONE PROTEIN [Ralstonia
           solanacearum]
          Length = 905

 Score =  757 bits (1955), Expect = 0.0
 Identities = 445/911 (48%), Positives = 593/911 (65%), Gaps = 65/911 (7%)








 
Structural Features:
COG0542, ClpA, ATPases with chaperone activity, ATP-binding subunit 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 786 residues,  97.3% aligned
Score =  764 bits (1974), Expect = 0.0
Identities = 346/848 (40%), Positives = 471/848 (55%), Gaps = 89/848 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:291




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17433




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37226




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:144_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:144
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
261
                           PA1662_tr
                           translation of PA1662
                           877
                           99.65
                           99.77
                           0
                           4366.0
     

     
     
17620
                           gb|AAG05051.1|AE004594_3
                           (AE004594) probable ClpA/B-type protease [Pseudomonas aeruginosa PAO1]
                           877
                           99.65
                           99.77
                           0
                           4366.0
     

     
     
17621
                           gb|AAO58847.1|
                           (AE016875) clpB protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           889
                           83.91
                           89.76
                           19
                           3675.0
     

     
     
17622
                           gb|AAO56053.1|
                           (AE016864) clpB protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           877
                           67.84
                           79.47
                           10
                           2997.0
     

     
     
17623
                           gb|AAR33765.1|
                           (AE017208) clpB protein, putative [Geobacter sulfurreducens PCA]
                           904
                           51.99
                           65.15
                           56
                           2190.0
     

     






      

          
GC ORFID: 43146How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1662Glimmer Score: 

          
Start: 1129845Stop: 1132478

          
Length: 2634


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1662 translation of PA1662Homolog Bit Score 1686.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2306 (ORF: BLASTX 719.0), t_PA0090 (ORF: BLASTX 684.0), t_PA4542 (ORF: BLASTX 548.0), t_PA1662 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCATGATCAACGTAGACCTGCAACAACTGATTCAGGCGCTGGATGCCGACACCCGGCGCGACCTCGAA 
GGCTCGGCCGAGCGCTGCGTAGCCCGTGGCGGCAGCAAGGTACTGGTGGAGGACCTGTTGCTGGGCCTGCTG 
GAGCGTCCCCAGGGACTGCTGGCGCGCGCCCTGCAGGATGCCGCGGTGGACGCCGGCGAACTCAACGCCGCG 
TTGCAAGCGCGGGGCGAGCACAGCGCCTCGCGCAATCCGGTGTTCGCGCCCGAGCTGGTGCAGTGGCTGCAG 
GATGCGCTGTTGCTGGCCAACCTCGAACTGGGCCGTAGCCAGATCGACCAGGCGGCATTGATCCTGGCCCTG 
CTACGCAACCCGTTGCGCTATGCCGGCAGCCGCTACCAGCCGCTGCTGGCGCGGCTCGACATCGAGCGGTTG 
AAGGATTTCGCGCTCTCGCAGCCGCTGGAGGGCGCGCCCAGCGGCAAGCCGGGCGGCGGCGAGTCCCTGTTG 
CAGCGTTTCACCCACAACCTTACCCAGCAGGCGCGCGACGGCAAGCTCGATCCGGTGCTCTGTCGCGACGGG 
GCTATTCGCCAGATGGTCGACATCCTGGCCCGTCGGCGGAAAAACAACCCCATCGTGGTCGGCGAGGCTGGC 
GTCGGCAAGACCGCCATCGTCGAAGGCCTGGCCTCGCGGATCGCCGCAGGGGAAGTGCCGCCGGCGCTGAGG 
GACGTCGAGCTGTTGTCCCTCGACATGGGCCTGTTGCAGGCCGGTGCCAGCGTGAAGGGCGAGTTCGAGCGG 
CGCCTGAAAGGCGTCATCGACGAAGTGAAGGCAGCGCCCAGGCCGACCATCCTGTTCATCGACGAGGCCCAT 
ACGCTGATCGGCGCGGGCGGTCAGGCCGGCGGCTCGGATGCCGCCAACCTGCTCAAGCCGGCCCTGGCACGT 
GGCGAGTTGCGCACCATCGCGGCGACGACCTGGGCCGAATACAAGAAGTATTTCGAGAAGGACCCGGCGCTG 
GCCCGGCGCTTCCAGCCCGTGCAGTTGCATGAGCCGAGCGTTGCCGAGGCGGTGACGATCCTGCGTGGCCTG 
GCCCGGGTTTACGAGGAAAGCCACGGTATCTACCTGCGCGACGACGCGGTGGTGGCCGCCGCCGAACTGTCC 
GCCCGCTACCTGGCGGGTCGCCAGTTGCCGGACAAGGCCGTCGACGTCCTCGACACCGCCTGTGCGCGGGTG 
CGCATCAGCCTGGCGGCGGCGCCGGAGAGCCTCGAGCGCCTGCGCGGCGAGCTGGCCGAAGGTGAGCGCCAG 
CGCCAGGCCCTGCGCCGCGATGCCGAGGCAGGCCTGCCGATCGACCACGATGCCCTGCAGGCGCTGGAGGAG 
CGTCTGGCCCAGGCGGAAAGCGAGCGGCACGTACAGGAGGACCAGTGGAGCCGCCAGCGCGAACTCGCCGAG 
CGCCTGCTCGCCCTGCGCCAGCAATTGGCCAGGGCCCGCGAGGCGAACCGGGAAGAGCAGGGCAGCGAGGCG 
GATGCGGAGGCTTTCCCGGCCGACGAGCATGGCGGTGTCGAAGCCCTGGAAAAGGCCCTTCACGAAACCCGC 
CAGGCGCTCGCCGATGCCCAGGCCCAGGGGCGGCTGGTCAGCTTCGAGGTCTGCCCGCGCCTGGTTGCCGAG 
GTGATCGGCGCCTGGACCGGCGTACCGGTGGAACAACTGGCGCGGGAACACAACGCCAAGGTGATGGGGTTC 
GCTGACGACCTGCGGGCGCGGATCCGTGGCCAGGAACAGGCGGTCAGCGCCCTGGACCGCGCGATGCGCGCC 
ACCGCGGCCGGGCTGAACAAGCCCGATGCGCCGGTCGGCGTGTTCCTGCTGGTGGGCCCGAGCGGGGTGGGC 
AAGACCGAGACCGCGCTGGCGCTGGCCGACCTGCTGTATGGCGGCGAGCGTTTCATCACCACCATCAACATG 
TCCGAGTTCCAGGAGAAGCACACCGTCTCGCGCCTGATCGGCGCGCCGCCCGGCTATGTCGGCTATGGCGAG 
GGTGGCATGCTCACCGAGGCGGTACGCCAGAAGCCCTATTCGGTGATATTGCTGGACGAGGTGGAGAAGGCC 
GATCCGGACGTGCTCAACCTGTTCTACCAGATCTTCGACAAGGGCGTGGCCAACGATGGCGAAGGGCGCGAG 
ATCGATTTCCGCAATACCTTGATCCTGATGACCTCCAACCTCGCCAGCGAGCACATCGCCGCGCTTTGCCAG 
GACGGCGCGCGGCCTTCCGCCGAACTCCTGGAGGAAACCATCCGGCCGGCGCTCAGCCGGCATTTCAAGCCG 
GCGCTGCTGGCGCGCATGCGCGTGGTGCCTTACTACCCGGTGGGCGGCCCGGTACTGCGCGAGCTGATCGAG 
ATCAAGCTGGAACGCCTCGGCGAGCGTCTGGCGCGCCGTCAACTGGCTTTCGACTACAGCCAGGCGCTGGTG 
GACCACCTGGCCGAGCGTTGCACCCAGAGCGACAGCGGCGCACGGTTGATCGACCACCTGCTGGACACGCAC 
CTGCTGCCGCTGGTGGCCGACCGTTTGCTGGAAGCGATGGCGCGCGACGAGCGTCTCGAGCGGGTCCATGCG 
ACGCTGGGCGAGCACGGCCGCGTGCTCTGCGAGTTCGCCTGA