ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1438

TrivialName: PA14_68290

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_68290

PAO1 Ortholog Locus: PA5169

Sequence Length: 1284

Protein Length: 427

Start: 6091005

Stop: 6092288

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08554.1|AE004929_9 (AE004929) probable C4-dicarboxylate transporter [Pseudomonas aeruginosa PAO1] Identities = 420/427 (98%), Positives = 426/427 (99%)

Sequence:

ATGACCATCCTGTTCCTCTTCCTGCTGCTGTTCCTGCTGATGTTCATCGGCGTGCCGATCGCCGTCTCCCTG
GGGCTCTCCGGTGCGCTGACGATCCTCCTGTTCAGCCCGGACTCGGTACGCTCGCTGGCGATCAAGCTGTTC
GAGACCTCCGAGCACTACACCCTGCTGGCGATCCCGTTCTTCCTGCTCTCCGGCGCGTTCATGACCACCGGC
GGGGTGGCGCGGCGCCTGATCGACTTCGCCAACGCCTGCGTCGGGCATATTCGCGGCGGCCTTGCGATCGCC
GCGGTGCTCGCCTGCATGCTCTTCGCCGCGCTGTCCGGTTCCTCGCCGGCGACGGTGGCGGCGGTCGGCTCG
ATCGCCATCGCCGGCATGGTCCGTTCGGGCTACCCACAGGCGTTCGGCGCCGGGATCGTCTGCAACGCCGGC
ACCCTGGGCATCCTCATCCCACCGTCGATCGTCATGGTGGTCTATGCCGCGGCGACCGAAACCTCGGTCGGC
AAGCTGTTCATGGCCGGCGTGGTCCCCGGACTATTGCTGGGCCTGATCCTGATGGTGGTGATCTACATCGTC
GCGCGGGTCAAGAAGCTGCCGGCCATGCCGAGAGTCAGCCTTCGCGAATGGATCGCCAGCGCGCGCAAGGCG
CTCTGGGGCCTGCTGCTGATGGTGATCATTCTCGGCGGCATCTATTCGGGCGCCTTCACCCCAACCGAGGCT
GCCGCCGTCGCGGCCGTGTACTCGGCGTTCGTGGCGCTGTTCGTGTACAAGGACATGCGCCTGAAAGAGTGC
CCGAAGGTGCTGCTGGAGTCCGGCAAGCTGACCATCATGCTGATGTTCATCATCGCCAACGCCATGCTCTTC
GCCCATGTGCTGACCACCGAGCAGATTCCGCAGAGTATCGCCGCCTGGGTCACCGACCTCGGGCTGTCGCCG
TGGATGTTCCTGCTGGTGGTGAACATCGTGCTGCTGATCGCCGGCAACTTCATGGAGCCCTCGGCGATCATC
CTGATCCTGGCACCGATCTTCTTCCCCATCGCCATGGAGCTGGGTATCGATCCGATCCACCTCGGCATCATC
ATGGTGGTGAACATGGAGATCGGCCTGATCACCCCGCCGGTCGGCCTCAACCTGTTCGTCACCTCGGCGGTC
ACCGGCATGCCGCTGGGCGCGACCATCCGCGCGGCGCTGCCGTGGCTGATGATCCTGCTGGTGTTCCTGATC
ATCGTGACCTACATCCCGGCGGTATCCATGGCATTGCCGAACTGGCTGGGGATGAGCTGA

Translation:

MTILFLFLLLFLLMFIGVPIAVSLGLSGALTILLFSPDSVRSLAIKLFETSEHYTLLAIPFFLLSGAFMTTG
GVARRLIDFANACVGHIRGGLAIAAVLACMLFAALSGSSPATVAAVGSIAIAGMVRSGYPQAFGAGIVCNAG
TLGILIPPSIVMVVYAAATETSVGKLFMAGVVPGLLLGLILMVVIYIVARVKKLPAMPRVSLREWIASARKA
LWGLLLMVIILGGIYSGAFTPTEAAAVAAVYSAFVALFVYKDMRLKECPKVLLESGKLTIMLMFIIANAMLF
AHVLTTEQIPQSIAAWVTDLGLSPWMFLLVVNIVLLIAGNFMEPSAIILILAPIFFPIAMELGIDPIHLGII
MVVNMEIGLITPPVGLNLFVTSAVTGMPLGATIRAALPWLMILLVFLIIVTYIPAVSMALPNWLGMS*

AnnotationID:1447 GeneID:1438

AnnotatorUID: danlee

Modification Date/Time: 2004-02-04 14:02:11

Gene Name:

Confidence Code: 3

GeneProduct: probable C4-dicarboxylate transporter

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (15) Membrane proteins

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG1593, COG4664

Secondary Functional Category(ies): Transport of small molecules

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Fifth of five ORF cluster.

Comment:

ReferenceID:2879

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:16999

Author/Investigator(s):

Title:

PubMed:

MedLine:

Source:

NCBI - Conserved Domain Search.

Reference Type: Blast (text/plain)

Data: PA5169_CDS.cgi

URL:

ReferenceID:20023

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1438

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2599 PA5169_tr translation of PA5169 427 98.36 99.76 0 2080.0

81623 gb|AAG08554.1|AE004929_9 (AE004929) probable C4-dicarboxylate transporter [Pseudomonas aeruginosa PAO1] 427 98.36 99.76 0 2080.0

2600 PA0886_tr translation of PA0886 427 88.29 95.08 0 1898.0

81624 gb|AAG04275.1|AE004523_3 (AE004523) probable C4-dicarboxylate transporter [Pseudomonas aeruginosa PAO1] 427 88.29 95.08 0 1898.0

81625 emb|CAC44173.1| (AJ313422) probable C4-dicarboxylate transporter [Pseudomonas stutzeri] 427 84.54 92.27 1 1846.0

GC ORFID: `44440`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA5169`	Glimmer Score:
Start: `5354691`	Stop: `5355974`
Length: `1284`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA5169 translation of PA5169`	Homolog Bit Score `805.0`
Other Homologs: `t_PA0886 (ORF: BLASTX 735.0), psyr_15may02_Scaffold3_revised_gene5129 (ORF: BLASTX 330.0), t_PA5169 (ORF: GLIMMER)`
GC ORF Sequence
ATGACCATCCTGTTCCTCTTCCTGCTGCTGTTCCTGCTGATGTTCATCGGCGTGCCGATCGCCGTCTCCCTG GGGCTCTCCGGTGCGCTGACGATCCTCCTGTTCAGCCCGGACTCGGTACGCTCGCTGGCGATCAAGCTGTTC GAGACCTCCGAGCACTACACCCTGCTGGCGATCCCGTTCTTCCTGCTCTCCGGCGCGTTCATGACCACCGGC GGGGTGGCGCGGCGCCTGATCGACTTCGCCAACGCCTGCGTCGGGCATATTCGCGGCGGCCTTGCGATCGCC GCGGTGCTCGCCTGCATGCTCTTCGCCGCGCTGTCCGGTTCCTCGCCGGCGACGGTGGCGGCGGTCGGCTCG ATCGCCATCGCCGGCATGGTCCGTTCGGGCTACCCACAGGCGTTCGGCGCCGGGATCGTCTGCAACGCCGGC ACCCTGGGCATCCTCATCCCACCGTCGATCGTCATGGTGGTCTATGCCGCGGCGACCGAAACCTCGGTCGGC AAGCTGTTCATGGCCGGCGTGGTCCCCGGACTATTGCTGGGCCTGATCCTGATGGTGGTGATCTACATCGTC GCGCGGGTCAAGAAGCTGCCGGCCATGCCGAGAGTCAGCCTTCGCGAATGGATCGCCAGCGCGCGCAAGGCG CTCTGGGGCCTGCTGCTGATGGTGATCATTCTCGGCGGCATCTATTCGGGCGCCTTCACCCCAACCGAGGCT GCCGCCGTCGCGGCCGTGTACTCGGCGTTCGTGGCGCTGTTCGTGTACAAGGACATGCGCCTGAAAGAGTGC CCGAAGGTGCTGCTGGAGTCCGGCAAGCTGACCATCATGCTGATGTTCATCATCGCCAACGCCATGCTCTTC GCCCATGTGCTGACCACCGAGCAGATTCCGCAGAGTATCGCCGCCTGGGTCACCGACCTCGGGCTGTCGCCG TGGATGTTCCTGCTGGTGGTGAACATCGTGCTGCTGATCGCCGGCAACTTCATGGAGCCCTCGGCGATCATC CTGATCCTGGCACCGATCTTCTTCCCCATCGCCATGGAGCTGGGTATCGATCCGATCCACCTCGGCATCATC ATGGTGGTGAACATGGAGATCGGCCTGATCACCCCGCCGGTCGGCCTCAACCTGTTCGTCACCTCGGCGGTC ACCGGCATGCCGCTGGGCGCGACCATCCGCGCGGCGCTGCCGTGGCTGATGATCCTGCTGGTGTTCCTGATC ATCGTGACCTACATCCCGGCGGTATCCATGGCATTGCCGAACTGGCTGGGGATGAGCTGA