ViewGene

Locus Name:
GeneID:
Location:

GeneID:1436
TrivialName: PA14_56340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56340
PAO1 Ortholog Locus:PA4334
Sequence Length:1257
Protein Length:418
Start: 5028078
Stop: 5026822
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07722.1|AE004849_9 (AE004849) probable transport protein [Pseudomonas aeruginosa PAO1]
Identities = 416/418 (99%), Positives = 416/418 (99%)
Sequence:
GTGGCGGTGCCGGCCGACgccTcGCCGCTGCGCAAGCTGGCGCTGTTCGTCGGCCCCGGCCTGCTGGTCTCG
GTCGGCTACATGGACCCCGGCAACTGGGCCACCGCCATCGAGGCGGGCTCGCGCTTCGGCTACGCGCTGCTG
TTCGTGGTGGTGCTGGCGAGCTTTTCCGGGATGCTCCTGCAAAGCCTCTGTTCGCGCCTGGGGATCGCCACC
GGCCGCGACCTCGCGCAGCTCTCCCGGGAGCGCTATCGCCCTGGCGTGGCGCGTGGCCAATGGCTGCTGGCG
GAACTGTCGATCGTCGCCACCGACCTTGCCGAGGTGCTCGGCGCGGCGCTGGCCTTCCACCTGCTGCTGGGC
GTCTCGATTACCACCGGGGTGGTCCTCACCGCCTTCGATACCCTGATCGTGCTGGCCCTGCAGGGCGCCAAC
TTCCGCCGCCTGGAGGCCATAGTGCTGGGGCTGATCGCGACCATCGGCGCGTGTTTCTTCGTCGAACTGGTG
CTGATCGGCCCCTACTGGCCGGATGTCGCCGCCGGCCTGCGGCCATCCTGGGACACCCTGAGCAGCCAGGAG
CCGCTGTACCTGGCGATCGGCATCCTCGGCGCGACGGTGATGCCGCACAACCTCTACCTGCATTCGTCCGTG
GTGCAGACCCGGGTCAGCGGCGACGACGCGGCGAGCAAACGCTCGGCGATCCGCTTTTCCCGGCTCGACACC
ATCGGCTCGCTGTCCCTGGCGCTGCTGGTCAATGCGGCGATCCTGATCCTCGCCGCCGCGGCTTTCCACGGC
AGCGGCCATACCGAGGTGGTGGAGATCCAGGACGCCTACCACCTGCTCGACCCGCTGGTGGGCGGCGCCCTG
GCCAGCTTCCTGTTCGGCTTCGCCCTGCTGGCGGCGGGGCAAAGCTCGACCTTCACCGGCACCATTGCCGGG
CAGGTGGTGATGGAGGGTTTCCTCCGGGCGAAGATTCCCTGCTGGCAGCGGCGCCTGATCACCCGCGGCCTG
GCCCTGGTGCCGGCCTTGATCGGCGTGCTCTGGCTGGGCGAAGGCGCGGTAGGCAAGCTGCTGGTGCTCAGC
CAGGTGGTGCTCAGCCTGCAATTGCCGTTCGCCCTGTGGCCGCTGATTCGCTTCAGCAGCGACCGGAACCTG
ATGGGGGAGTTCGTCAACCCGCGCTGGGTCAGCGCGCTGGCCTGGTCGTTGTTCGGCCTGATCTCGGCGGCG
AACCTGACCTTGCTGTATTTCTGGTTCGGCTGA
Translation:
MAVPADASPLRKLALFVGPGLLVSVGYMDPGNWATAIEAGSRFGYALLFVVVLASFSGMLLQSLCSRLGIAT
GRDLAQLSRERYRPGVARGQWLLAELSIVATDLAEVLGAALAFHLLLGVSITTGVVLTAFDTLIVLALQGAN
FRRLEAIVLGLIATIGACFFVELVLIGPYWPDVAAGLRPSWDTLSSQEPLYLAIGILGATVMPHNLYLHSSV
VQTRVSGDDAASKRSAIRFSRLDTIGSLSLALLVNAAILILAAAAFHGSGHTEVVEIQDAYHLLDPLVGGAL
ASFLFGFALLAAGQSSTFTGTIAGQVVMEGFLRAKIPCWQRRLITRGLALVPALIGVLWLGEGAVGKLLVLS
QVVLSLQLPFALWPLIRFSSDRNLMGEFVNPRWVSALAWSLFGLISAANLTLLYFWFG*
AnnotationID:1445GeneID:1436
AnnotatorUID: danlee
Modification Date/Time: 2004-04-20 16:04:14
Gene Name:mntH1
Confidence Code:2
GeneProduct:NRAMP protein MntH1
Cell Localization:()
Synonyms:PA4334, yfeP
Cell Localization Confidence Code:5
MolecularFunction:possible pH-stimulated Mn2+ transporter
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG1291, pfam01566, COG1914
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
93.06 % identical to mntH1 of P. aeruginosa PAO1024.
Structural Features:
KOG1291, Mn2+ and Fe2+ transporters of the NRAMP family. Score: 347, 3e-96
pfam01566, Nramp, Natural resistance-associated macrophage protein. Score: 330, 4e-91
COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family.  Score: 323, 6e-89
Genomic Context:
Comment:
ReferenceID:14349
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20019
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31759
Author/Investigator(s): ntH2 of P. aeruginosa PAO1024.
Title: Title: The NRAMP proteins of Salmonella typhimurium and Escherichia coli are selective manganese transporters involved in the response to reactive oxygen.
PubMed: 10844693
MedLine: 20305051
Source:
Reference Type:PDF (text/plain)
Data:j.1365-2958.2000.01922.x.pdf
URL:
Homologs By Global Alignment
Gene ID:1436

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2596 PA4334_tr translation of PA4334 418 99.52 99.52 0 2078.0
81512 gb|AAG07722.1|AE004849_9 (AE004849) probable transport protein [Pseudomonas aeruginosa PAO1] 418 99.28 99.52 0 2075.0
81513 gb|AAD46618.1|AF161319_1 (AF161319) NRAMP protein MntH1 [Pseudomonas aeruginosa] 418 93.06 93.06 27 1946.0
81514 gb|AAO56006.1| (AE016864) manganese transport protein MntH [Pseudomonas syringae pv. tomato str. DC3000] 418 83.01 89.71 8 1759.0
81515 emb|CAD17671.1| (AL646079) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Ralstonia solanacearum] 442 66.06 76.47 24 1471.0
GC ORFID: 44438How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4334Glimmer Score:
Start: 4291754Stop: 4290498
Length: 1257
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4334 translation of PA4334Homolog Bit Score 805.0
Other Homologs: t_PA4334 (ORF: GLIMMER)
GC ORF Sequence
GTGGCGGTGCCGGCCGACgccTcGCCGCTGCGCAAGCTGGCGCTGTTCGTCGGCCCCGGCCTGCTGGTCTCG
GTCGGCTACATGGACCCCGGCAACTGGGCCACCGCCATCGAGGCGGGCTCGCGCTTCGGCTACGCGCTGCTG
TTCGTGGTGGTGCTGGCGAGCTTTTCCGGGATGCTCCTGCAAAGCCTCTGTTCGCGCCTGGGGATCGCCACC
GGCCGCGACCTCGCGCAGCTCTCCCGGGAGCGCTATCGCCCTGGCGTGGCGCGTGGCCAATGGCTGCTGGCG
GAACTGTCGATCGTCGCCACCGACCTTGCCGAGGTGCTCGGCGCGGCGCTGGCCTTCCACCTGCTGCTGGGC
GTCTCGATTACCACCGGGGTGGTCCTCACCGCCTTCGATACCCTGATCGTGCTGGCCCTGCAGGGCGCCAAC
TTCCGCCGCCTGGAGGCCATAGTGCTGGGGCTGATCGCGACCATCGGCGCGTGTTTCTTCGTCGAACTGGTG
CTGATCGGCCCCTACTGGCCGGATGTCGCCGCCGGCCTGCGGCCATCCTGGGACACCCTGAGCAGCCAGGAG
CCGCTGTACCTGGCGATCGGCATCCTCGGCGCGACGGTGATGCCGCACAACCTCTACCTGCATTCGTCCGTG
GTGCAGACCCGGGTCAGCGGCGACGACGCGGCGAGCAAACGCTCGGCGATCCGCTTTTCCCGGCTCGACACC
ATCGGCTCGCTGTCCCTGGCGCTGCTGGTCAATGCGGCGATCCTGATCCTCGCCGCCGCGGCTTTCCACGGC
AGCGGCCATACCGAGGTGGTGGAGATCCAGGACGCCTACCACCTGCTCGACCCGCTGGTGGGCGGCGCCCTG
GCCAGCTTCCTGTTCGGCTTCGCCCTGCTGGCGGCGGGGCAAAGCTCGACCTTCACCGGCACCATTGCCGGG
CAGGTGGTGATGGAGGGTTTCCTCCGGGCGAAGATTCCCTGCTGGCAGCGGCGCCTGATCACCCGCGGCCTG
GCCCTGGTGCCGGCCTTGATCGGCGTGCTCTGGCTGGGCGAAGGCGCGGTAGGCAAGCTGCTGGTGCTCAGC
CAGGTGGTGCTCAGCCTGCAATTGCCGTTCGCCCTGTGGCCGCTGATTCGCTTCAGCAGCGACCGGAACCTG
ATGGGGGAGTTCGTCAACCCGCGCTGGGTCAGCGCGCTGGCCTGGTCGTTGTTCGGCCTGATCTCGGCGGCG
AACCTGACCTTGCTGTATTTCTGGTTCGGCTGA