ViewGene
Locus Name:
GeneID:
Location:

GeneID:1434
TrivialName: PA14_36690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36690
PAO1 Ortholog Locus:PA2155
Sequence Length:1206
Protein Length:401
Start: 3267587
Stop: 3268792
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05543.1|AE004642_10 (AE004642) probable phospholipase [Pseudomonas aeruginosa PAO1]
Identities = 397/401 (99%), Positives = 399/401 (99%)
Sequence:
ATGAACTTCCCCTGGCGCGACGGCAACCGCGTAGAACTGCTGATCAACGGCGAAGAGTACTTTCCGCGCCTG
TTCCAGTGCATCGCCGAGGCGCGCCGGGAGATCCTCCTGGAAACCTTCATCATCTTCGAGGACGAGGTCGGC
CGGCAGTTGCAGGAAGCCCTCAGCGCCGCCGCCGAGCGCGGTGTCGAGGTACAGGTCACGGTGGACGGCTAC
GGCACCGCCTCGCTCAGCACGGACTACCTGGCCAGGCTCACCGCCGCCGGGGTTCGCGTGCACCTGTTCGAC
CCGCGCCCGCGCCTGCTCGGCATGCGTACCAACCTGTTTCGCCGGTTGCACCGCAAGCTGGTGGTGATCGAT
CGCCAGCAGGCCTTCGTCGGCGGCATCAACTACGGCGAGGACCACCTGGTGCGTCGCGGCAACATGGCCAAG
CAGGACTACGCGGTGCGCGTCGAGGGCCCGGTGGTGCGCGATATCCGCCAGGCCTGCCTGGCGCTGCTCGAA
CCGGACGCCGACTACCCGCCGTTGCGGCCGTCGGGCGCCGGGCAGCCGGCGCGTGTGCGCCTGGTGATCCGC
GACAACGACCAGTCCAGCGACGACATCGAGCGCGAGTACCTGCAAGCGATCCGCCAGGCGCGGCGGCGCCTG
CTGATCGCCAACGCCTATTTCTTCCCCGGCTACCGCCTGCTTCGCGAGCTGCGCGATGCGGCGCGCCGCGGC
GTGCGCGTCGACCTGGTACTACAGGGCATGCCGGACATGCCGCTGGTGCGCCTGTGCAGCCGGCTGCTCTAC
GACTACCTGCTGCGCGAGGGCGTGCGTATCCACGAATACTGCCAGCGTCCGCTGCACGGCAAGGTCGCGGTG
ATCGACGACGACTGGTCGACCATCGGTTCGAGCAATCTCGATCCCCTCAGCCTGTCGCTGAACCTGGAGGCC
AACCTGGTGATCCACGACGTCGCCTTCAACGGCCAGCTCTACCAGCACCTGCGCGAGCTGGCGCGCCGCCAC
TGCCGGCGCATCAGCCGCCGCCACGCCAGGCGCGGCTACTGGTGGCGGGCGCCGCTGATCTTCCTCGGCTTC
CACTTTTCCCGGCATTTCCCGGCCATCGCCGGTTGGGTACCCGCCCATCTGCCGCGCCTGAAATCGCTGGAG
CCGCGTCCGTCGCGGCGCTGGCAGGAACGCCAGGGCCAGCGGGGCAACCCATGA
Translation:
MNFPWRDGNRVELLINGEEYFPRLFQCIAEARREILLETFIIFEDEVGRQLQEALSAAAERGVEVQVTVDGY
GTASLSTDYLARLTAAGVRVHLFDPRPRLLGMRTNLFRRLHRKLVVIDRQQAFVGGINYGEDHLVRRGNMAK
QDYAVRVEGPVVRDIRQACLALLEPDADYPPLRPSGAGQPARVRLVIRDNDQSSDDIEREYLQAIRQARRRL
LIANAYFFPGYRLLRELRDAARRGVRVDLVLQGMPDMPLVRLCSRLLYDYLLREGVRIHEYCQRPLHGKVAV
IDDDWSTIGSSNLDPLSLSLNLEANLVIHDVAFNGQLYQHLRELARRHCRRISRRHARRGYWWRAPLIFLGF
HFSRHFPAIAGWVPAHLPRLKSLEPRPSRRWQERQGQRGNP*
AnnotationID:1443GeneID:1434
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 12:12:17
Gene Name:
Confidence Code:3
GeneProduct:putative phospholipase
Cell Localization:()
Synonyms:ybhO
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:putative synthetase
Functional Category Confidence Code:5
COGs:COG1502
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68871.1|AE016519_4 (AE016786) phospholipase family protein [Pseudomonas putida KT2440]
          Length = 400

 Score =  503 bits (1294), Expect = e-141
 Identities = 247/401 (61%), Positives = 300/401 (74%), Gaps = 8/401 (1%)

>gb|AAC73876.1| (AE000181) putative synthetase [Escherichia coli K12]
          Length = 413

 Score =  433 bits (1114), Expect = e-121
 Identities = 214/403 (53%), Positives = 286/403 (70%), Gaps = 9/403 (2%)

>gb|AAN42374.1|AE015102_11 (AE015102) putative synthetase [Shigella flexneri 2a str. 301]
          Length = 413

 Score =  431 bits (1109), Expect = e-120
 Identities = 213/403 (52%), Positives = 285/403 (70%), Gaps = 9/403 (2%)








 
Structural Features:
COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin 
synthases and related enzymes 
[Lipid metabolism]
CD-Length = 438 residues,  84.0% aligned
Score =  228 bits (583), Expect = 7e-61
Identities = 134/368 (36%), Positives = 183/368 (49%), Gaps = 22/368 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2871




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20015




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32573




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1434_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1434
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2594
                           PA2155_tr
                           translation of PA2155
                           401
                           99.00
                           99.50
                           0
                           2080.0
     

     
     
81490
                           gb|AAG05543.1|AE004642_10
                           (AE004642) probable phospholipase [Pseudomonas aeruginosa PAO1]
                           401
                           99.00
                           99.50
                           0
                           2080.0
     

     
     
81491
                           gb|AAN68871.1|AE016519_4
                           (AE016786) phospholipase family protein [Pseudomonas putida KT2440]
                           408
                           61.51
                           74.01
                           15
                           1301.0
     

     
     
81492
                           gb|AAO56978.1|
                           (AE016868) cardiolipin synthetase 2 [Pseudomonas syringae pv. tomato str. DC3000]
                           422
                           56.16
                           68.72
                           27
                           1160.0
     

     
     
81501
                           emb|CAE41631.1|
                           (BX640415) probable phospholipase [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           421
                           55.10
                           66.74
                           41
                           1125.0
     

     






      

          
GC ORFID: 44436How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2155Glimmer Score: 

          
Start: 1686327Stop: 1685122

          
Length: 1206


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2155 translation of PA2155Homolog Bit Score 805.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3033 (ORF: BLASTX 201.0), t_PA2155 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACTTCCCCTGGCGCGACGGCAACCGCGTAGAACTGCTGATCAACGGCGAAGAGTACTTTCCGCGCCTG 
TTCCAGTGCATCGCCGAGGCGCGCCGGGAGATCCTCCTGGAAACCTTCATCATCTTCGAGGACGAGGTCGGC 
CGGCAGTTGCAGGAAGCCCTCAGCGCCGCCGCCGAGCGCGGTGTCGAGGTACAGGTCACGGTGGACGGCTAC 
GGCACCGCCTCGCTCAGCACGGACTACCTGGCCAGGCTCACCGCCGCCGGGGTTCGCGTGCACCTGTTCGAC 
CCGCGCCCGCGCCTGCTCGGCATGCGTACCAACCTGTTTCGCCGGTTGCACCGCAAGCTGGTGGTGATCGAT 
CGCCAGCAGGCCTTCGTCGGCGGCATCAACTACGGCGAGGACCACCTGGTGCGTCGCGGCAACATGGCCAAG 
CAGGACTACGCGGTGCGCGTCGAGGGCCCGGTGGTGCGCGATATCCGCCAGGCCTGCCTGGCGCTGCTCGAA 
CCGGACGCCGACTACCCGCCGTTGCGGCCGTCGGGCGCCGGGCAGCCGGCGCGTGTGCGCCTGGTGATCCGC 
GACAACGACCAGTCCAGCGACGACATCGAGCGCGAGTACCTGCAAGCGATCCGCCAGGCGCGGCGGCGCCTG 
CTGATCGCCAACGCCTATTTCTTCCCCGGCTACCGCCTGCTTCGCGAGCTGCGCGATGCGGCGCGCCGCGGC 
GTGCGCGTCGACCTGGTACTACAGGGCATGCCGGACATGCCGCTGGTGCGCCTGTGCAGCCGGCTGCTCTAC 
GACTACCTGCTGCGCGAGGGCGTGCGTATCCACGAATACTGCCAGCGTCCGCTGCACGGCAAGGTCGCGGTG 
ATCGACGACGACTGGTCGACCATCGGTTCGAGCAATCTCGATCCCCTCAGCCTGTCGCTGAACCTGGAGGCC 
AACCTGGTGATCCACGACGTCGCCTTCAACGGCCAGCTCTACCAGCACCTGCGCGAGCTGGCGCGCCGCCAC 
TGCCGGCGCATCAGCCGCCGCCACGCCAGGCGCGGCTACTGGTGGCGGGCGCCGCTGATCTTCCTCGGCTTC 
CACTTTTCCCGGCATTTCCCGGCCATCGCCGGTTGGGTACCCGCCCATCTGCCGCGCCTGAAATCGCTGGAG 
CCGCGTCCGTCGCGGCGCTGGCAGGAACGCCAGGGCCAGCGGGGCAACCCATGA