ViewGene

Locus Name:
GeneID:
Location:

GeneID:1433
TrivialName: PA14_39000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39000
PAO1 Ortholog Locus:PA1974
Sequence Length:1200
Protein Length:399
Start: 3476224
Stop: 3475025
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05362.1|AE004624_1 (AE004624) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 398/399 (99%), Positives = 399/399 (100%)
Sequence:
ATGAACAAGAACAACACCGCCGTTCGCCGAATCCTGCCGCTGACCCTGGCCTCGCTGGGTGCCCTGGGCGGC
CTGCAACCGGCCGCCGCCGATATCCTGCTGTACGACAAGGACGAGACCACCTTTTCCACCGACGGCTACTTC
AATGCCTTCTACGTCAACAGCGACGTCGACCGCCAGGGCGAGACCTACGATCGCCGCCAGTCGCGGGTGAAG
ATGGGATTCCTGCCGAACTACATCGGCTTCAACTTCGGCAGGAAGGTCGACGAGCTGAGCCTCGGTGGTCGC
GCTTCCTTCTGGGTGACCATCAACGACAGCGAGACCGACGGCACCGATACCGCCATCGACGTCCGTCAGTTC
TACGGCACGGTCGCCGGCGACTGGGGCGAGGTGCTGATCGGCAAGGACTTCGGCCTGTTCTCGCGCTCGAAC
ATCTTCCTCGACGAACTGCTGGCCGGTTTCGGCAACCCCAGCGACACCCTCGGCCTGGTGGACGGCAAGGGC
GTCTCCTTCGGCAACATCGGCACCGGCTATCCGTATCCGTTCCCCACCTCGCAGATCACCTACCGCAACAAC
GACCTGCTGCCCGGCCTGCGCATCGCCGTGGGCATCCTCGACCCGATCGACTCCAACCAGATCGACAAAGAT
GCCAGCGACGGCCTCGACGACAAGGCCTACCAGGACAACCCGCGCTACGAGAGCGAGGTCAGCTACCAGTTC
GACCTGGCTGGGGCGCAGGTCTACAGCTGGATCAACGGCGGCTACCAGACTTCGAAGAACACCAGCGACAGC
GTCGACAGCGTGACTTCCAAGGGGGTCGGCTATGGCTTGCAGGTGAAGATGGGCGGTTTCTCCGTGACCGGT
TCGGGGTTCACCGCCAAGGGCATCAATCCCTTCTTCACCAACAACGCCGGCGAAGCCGCGCTGCGCGAGGTG
GACAGCCGCGGCGCATTGCTGCAGGGCTCGTATTCATGGGGCAAGAACCGCCTGGCGCTGTCCTACGGCAAG
ACCGTCGACGACGGCAACGGCCTGGGTTCCGCGGCCGACTACGAGAGTCGCGGCATCGCCTATTTCCGCACG
ATCAACGACAACCTCAAGCTGGTCGCCGAGCTGAACCGCTACCGGATCGACGGGCGCGACGGTGCCGCGCTC
GACGAGGACACCGACACCGTGGCCCTCGGCGCCGTACTGAACTGGTGA
Translation:
MNKNNTAVRRILPLTLASLGALGGLQPAAADILLYDKDETTFSTDGYFNAFYVNSDVDRQGETYDRRQSRVK
MGFLPNYIGFNFGRKVDELSLGGRASFWVTINDSETDGTDTAIDVRQFYGTVAGDWGEVLIGKDFGLFSRSN
IFLDELLAGFGNPSDTLGLVDGKGVSFGNIGTGYPYPFPTSQITYRNNDLLPGLRIAVGILDPIDSNQIDKD
ASDGLDDKAYQDNPRYESEVSYQFDLAGAQVYSWINGGYQTSKNTSDSVDSVTSKGVGYGLQVKMGGFSVTG
SGFTAKGINPFFTNNAGEAALREVDSRGALLQGSYSWGKNRLALSYGKTVDDGNGLGSAADYESRGIAYFRT
INDNLKLVAELNRYRIDGRDGAALDEDTDTVALGAVLNW*
AnnotationID:1442GeneID:1433
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 16:04:47
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1974
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits at any threshold.
Genomic Context:
Comment:
ReferenceID:2869
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20013
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1433

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2593 PA1974_tr translation of PA1974 399 99.74 99.99 0 2078.0
81488 gb|AAG05362.1|AE004624_1 (AE004624) hypothetical protein PA1974 [Pseudomonas aeruginosa PAO1] 399 99.74 99.99 0 2078.0
81489 gb|AAN68270.1|AE016461_6 (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440] 402 71.64 83.33 10 1497.0
GC ORFID: 44435How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1974Glimmer Score:
Start: 1477687Stop: 1478886
Length: 1200
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1974 translation of PA1974Homolog Bit Score 805.0
Other Homologs: t_PA1974 (ORF: GLIMMER)
GC ORF Sequence
ATGAACAAGAACAACACCGCCGTTCGCCGAATCCTGCCGCTGACCCTGGCCTCGCTGGGTGCCCTGGGCGGC
CTGCAACCGGCCGCCGCCGATATCCTGCTGTACGACAAGGACGAGACCACCTTTTCCACCGACGGCTACTTC
AATGCCTTCTACGTCAACAGCGACGTCGACCGCCAGGGCGAGACCTACGATCGCCGCCAGTCGCGGGTGAAG
ATGGGATTCCTGCCGAACTACATCGGCTTCAACTTCGGCAGGAAGGTCGACGAGCTGAGCCTCGGTGGTCGC
GCTTCCTTCTGGGTGACCATCAACGACAGCGAGACCGACGGCACCGATACCGCCATCGACGTCCGTCAGTTC
TACGGCACGGTCGCCGGCGACTGGGGCGAGGTGCTGATCGGCAAGGACTTCGGCCTGTTCTCGCGCTCGAAC
ATCTTCCTCGACGAACTGCTGGCCGGTTTCGGCAACCCCAGCGACACCCTCGGCCTGGTGGACGGCAAGGGC
GTCTCCTTCGGCAACATCGGCACCGGCTATCCGTATCCGTTCCCCACCTCGCAGATCACCTACCGCAACAAC
GACCTGCTGCCCGGCCTGCGCATCGCCGTGGGCATCCTCGACCCGATCGACTCCAACCAGATCGACAAAGAT
GCCAGCGACGGCCTCGACGACAAGGCCTACCAGGACAACCCGCGCTACGAGAGCGAGGTCAGCTACCAGTTC
GACCTGGCTGGGGCGCAGGTCTACAGCTGGATCAACGGCGGCTACCAGACTTCGAAGAACACCAGCGACAGC
GTCGACAGCGTGACTTCCAAGGGGGTCGGCTATGGCTTGCAGGTGAAGATGGGCGGTTTCTCCGTGACCGGT
TCGGGGTTCACCGCCAAGGGCATCAATCCCTTCTTCACCAACAACGCCGGCGAAGCCGCGCTGCGCGAGGTG
GACAGCCGCGGCGCATTGCTGCAGGGCTCGTATTCATGGGGCAAGAACCGCCTGGCGCTGTCCTACGGCAAG
ACCGTCGACGACGGCAACGGCCTGGGTTCCGCGGCCGACTACGAGAGTCGCGGCATCGCCTATTTCCGCACG
ATCAACGACAACCTCAAGCTGGTCGCCGAGCTGAACCGCTACCGGATCGACGGGCGCGACGGTGCCGCGCTC
GACGAGGACACCGACACCGTGGCCCTCGGCGCCGTACTGAACTGGTGA