ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1432

TrivialName: PA14_19020

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_19020

PAO1 Ortholog Locus: PA3484

Sequence Length: 1227

Protein Length: 408

Start: 1643358

Stop: 1642132

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06872.1|AE004769_5 (AE004769) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 407/408 (99%), Positives = 407/408 (99%)

Sequence:

ATGACCGCCACCAGCGACCTGATCGAGTCACTGATTTCCTATAGCTGGGACGACTGGCAGGTGACCCGCCAG
GAAGCCCGCCGGGTGATCGCCGCGATCCGCAACGACAACGTGCCCGATGCGACCATCGCCGCACTCGACAAG
AGCGGCTCGCTGATCAAGCTGTTCCAGCGGGTGGGCCCGCCGGAACTGGCGCGCTCGCTGATCGCCAGCATC
GCCGGGCGCACCACCATGCAGCGCTACCAGGCACGCAATGCCTTGATCCGCAGCCTGATCAACAATCCCCTG
GGCACCCAGACCGACAACTGGATCTACTTCCCCACCATCACCTTCTTCGACATCTGCGCCGACCTCGCCGAC
GCCGCTGGCCGCCTGGGCTTCGCCGCGGCCGGCGCCACCGGGGTGGCCAGCCAGGCGATCCAGGGTCCGTTC
AGCGGGGTCGGCGCCACCGGCGTCAATCCGGCCGACCTGCCGTCCATTGCCTTCGGCGACCAGCTCAAGCTG
CTCAACAAGGACCCGGCGACCGTCACCAAGTACAGCAACCCGCTCGGCGACCTGGGCGCCTACCTGAGCCAG
CTTTCGCCGCAAGACAAGCTGAACCAGGCACAGACGCTGGTCGGCCAGCCGATCAGCACGCTGTTCCCCGAC
GCCTATCCGGGCAACCCGCCGTCGCGGGCCAAGGTCATGTCCGCGGCTGCGCGCAAGTACGACCTGACGCCG
CAACTGATCGGCGCGATCATCCTCGCCGAGCAGCGTGACCAGACCCGCGACGAAGACGCCAAGGACTATCAG
GCGGCAGTCAGCATCAAGAGCGCCAACACCTCCATCGGCCTCGGCCAGGTGGTGGTCTCCACCGCGATCAAG
TACGAGCTGTTCACCGACCTGCTCGGCCAGCCGGTGCGCCGCGGCCTGTCGCGCAAGGCGGTCGCCACCCTG
CTGGCTTCCGACGAATTCAACATCTTCGCCACCGCCCGTTACATCCGCTACGTCGCCAACCTGGCGTCGCAA
CAGGACCTGCGCAAGTTGCCGAAGACCCGCGGTGCATTTCCCTCCATCGATCTCCGCGCCTACGCCGGCAAT
CCGCGCAACTGGCCGCGGGACAATGTCCGCGCGCTGGCCTCGGAATACACCTCGCGTCCCTGGGACGACAAC
CTGTCGCCGGGCTGGCCGATGTTCGTCGACGATGCCTACGCCACCTTCCTCGACCCTGGAATGAGGTTCCCA
TGA

Translation:

MTATSDLIESLISYSWDDWQVTRQEARRVIAAIRNDNVPDATIAALDKSGSLIKLFQRVGPPELARSLIASI
AGRTTMQRYQARNALIRSLINNPLGTQTDNWIYFPTITFFDICADLADAAGRLGFAAAGATGVASQAIQGPF
SGVGATGVNPADLPSIAFGDQLKLLNKDPATVTKYSNPLGDLGAYLSQLSPQDKLNQAQTLVGQPISTLFPD
AYPGNPPSRAKVMSAAARKYDLTPQLIGAIILAEQRDQTRDEDAKDYQAAVSIKSANTSIGLGQVVVSTAIK
YELFTDLLGQPVRRGLSRKAVATLLASDEFNIFATARYIRYVANLASQQDLRKLPKTRGAFPSIDLRAYAGN
PRNWPRDNVRALASEYTSRPWDDNLSPGWPMFVDDAYATFLDPGMRFP*

AnnotationID:1441 GeneID:1432

AnnotatorUID: diggins

Modification Date/Time: 2005-04-19 11:11:03

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA3484

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:2867

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20012

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1432

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2592 PA3484_tr translation of PA3484 408 99.75 99.75 0 2081.0

81487 gb|AAG06872.1|AE004769_5 (AE004769) hypothetical protein PA3484 [Pseudomonas aeruginosa PAO1] 408 99.75 99.75 0 2081.0

GC ORFID: `44434`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA3484`	Glimmer Score:
Start: `3310574`	Stop: `3311800`
Length: `1227`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA3484 translation of PA3484`	Homolog Bit Score `806.0`
Other Homologs: `t_PA3484 (ORF: GLIMMER)`
GC ORF Sequence
ATGACCGCCACCAGCGACCTGATCGAGTCACTGATTTCCTATAGCTGGGACGACTGGCAGGTGACCCGCCAG GAAGCCCGCCGGGTGATCGCCGCGATCCGCAACGACAACGTGCCCGATGCGACCATCGCCGCACTCGACAAG AGCGGCTCGCTGATCAAGCTGTTCCAGCGGGTGGGCCCGCCGGAACTGGCGCGCTCGCTGATCGCCAGCATC GCCGGGCGCACCACCATGCAGCGCTACCAGGCACGCAATGCCTTGATCCGCAGCCTGATCAACAATCCCCTG GGCACCCAGACCGACAACTGGATCTACTTCCCCACCATCACCTTCTTCGACATCTGCGCCGACCTCGCCGAC GCCGCTGGCCGCCTGGGCTTCGCCGCGGCCGGCGCCACCGGGGTGGCCAGCCAGGCGATCCAGGGTCCGTTC AGCGGGGTCGGCGCCACCGGCGTCAATCCGGCCGACCTGCCGTCCATTGCCTTCGGCGACCAGCTCAAGCTG CTCAACAAGGACCCGGCGACCGTCACCAAGTACAGCAACCCGCTCGGCGACCTGGGCGCCTACCTGAGCCAG CTTTCGCCGCAAGACAAGCTGAACCAGGCACAGACGCTGGTCGGCCAGCCGATCAGCACGCTGTTCCCCGAC GCCTATCCGGGCAACCCGCCGTCGCGGGCCAAGGTCATGTCCGCGGCTGCGCGCAAGTACGACCTGACGCCG CAACTGATCGGCGCGATCATCCTCGCCGAGCAGCGTGACCAGACCCGCGACGAAGACGCCAAGGACTATCAG GCGGCAGTCAGCATCAAGAGCGCCAACACCTCCATCGGCCTCGGCCAGGTGGTGGTCTCCACCGCGATCAAG TACGAGCTGTTCACCGACCTGCTCGGCCAGCCGGTGCGCCGCGGCCTGTCGCGCAAGGCGGTCGCCACCCTG CTGGCTTCCGACGAATTCAACATCTTCGCCACCGCCCGTTACATCCGCTACGTCGCCAACCTGGCGTCGCAA CAGGACCTGCGCAAGTTGCCGAAGACCCGCGGTGCATTTCCCTCCATCGATCTCCGCGCCTACGCCGGCAAT CCGCGCAACTGGCCGCGGGACAATGTCCGCGCGCTGGCCTCGGAATACACCTCGCGTCCCTGGGACGACAAC CTGTCGCCGGGCTGGCCGATGTTCGTCGACGATGCCTACGCCACCTTCCTCGACCCTGGAATGAGGTTCCCA TGA