ViewGene
Locus Name:
GeneID:
Location:

GeneID:1431
TrivialName: PA14_35650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35650
PAO1 Ortholog Locus:PA2238
Sequence Length:1209
Protein Length:402
Start: 3170045
Stop: 3168837
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05626.1|AE004649_17 (AE004649) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 398/402 (99%), Positives = 400/402 (99%)
Sequence:
ATGCGTATTCTCTGGATCCTGCCCTACTCGCCCTGGCCCACCACCAGCGGCGGCAAGACCCGCCAGTACCAC
CTGCTGCGCAGCCTCGCGGCACGCGGCCACCGGATCACCGTGCTGCTGCACAGCAAGCAGCCGGTGAGCGCC
GAGGATCGCCAGGCCCTGGAGCCCTTCCTCGAACGCCTGGTCGTGCTGCCGCGCCGACCGCTGCGCAGCCTC
TCCACGCTGCTCGCCGCGCTGTTCGCGCCCTACCCGCTGCTGGCCAGCGTCAACGGCCTGTCGGCGGAGCTG
CAACGCACCGCCACGGAGTTGCTGCGCGAGCCCTGGGACGTGGTCCAGGTCGAGCACAGCTATAGCTTCCAG
CCCTACGAGCGACCGCTGCGCGACGCCGGCCAGCCGTTCGTGCTCACCGAGCACAACGTCGAGTCGTCCCTC
GGTGCCGCCACCTACGACCGCCTGCCGGGCTGGGCGCTGCCCTTCGTGCGCTACGACCAGTGGCGTTACCGC
CGCTGGGAACGCCGGGTGATGGGCCAGGCGGCAGCGGTCGTCGCCGTGACCGAGAAAGATGCGCGGCAGCTC
GGCGCGATGCTCGGGCGCCCGGTGCCAGTGGTGGTCAACGGGGTCGACTGCGAGCACTTCGCCGCCGCCCGG
CCGACGCCCGAAGCGCAGCGCGTGCTGTTCCTCGGCAACTACGAATACGCACCGAACGTCGATGCCGTGGAA
TGGATGCTCGACGAGATCCTGCCGCGGGTCTGGGCACACTGCCCCGaggCGCGCATGAGCGTCTGCGGCTAT
GCGCTGCCGGCGGAGTGGGCGCAACGCTGGAGCGATCCGCGCATCGAATGGCAAGGCTTCGTTCCCGACCTG
CTGCAACTGCAATCGAGCAGTTCGGTGTTCCTCGCCGCGCTGCGCCATGGCGGCGGTTCGAAGCTGAAGGTG
CTCGAGGCCCTGGCCGCCGGGCTGCCGCTGGCGAGTACCGCGCAGGGCGTTTCCGGCCTGGAACTGCGGGAC
GGCGAGGACTACCTGGGCGGCGAAACCGCCGAGCAGCTCGCCAACGCCGTGGTGCGCCTGTTGCAGGACCCC
GCGCAGGCCCGCTCGCTGGGCGAGAACGGCCGCGCCTACGTACGTCGCGCGCACGACTGGAGCGTCGCCGCC
AGCCAACTGGAACAGGTCTACGCCGGCCTCGCCGAAGGAGCGCCGGCATGCGCATAG
Translation:
MRILWILPYSPWPTTSGGKTRQYHLLRSLAARGHRITVLLHSKQPVSAEDRQALEPFLERLVVLPRRPLRSL
STLLAALFAPYPLLASVNGLSAELQRTATELLREPWDVVQVEHSYSFQPYERPLRDAGQPFVLTEHNVESSL
GAATYDRLPGWALPFVRYDQWRYRRWERRVMGQAAAVVAVTEKDARQLGAMLGRPVPVVVNGVDCEHFAAAR
PTPEAQRVLFLGNYEYAPNVDAVEWMLDEILPRVWAHCPEARMSVCGYALPAEWAQRWSDPRIEWQGFVPDL
LQLQSSSSVFLAALRHGGGSKLKVLEALAAGLPLASTAQGVSGLELRDGEDYLGGETAEQLANAVVRLLQDP
AQARSLGENGRAYVRRAHDWSVAASQLEQVYAGLAEGAPACA*
AnnotationID:1440GeneID:1431
AnnotatorUID: danlee
Modification Date/Time: 2005-10-10 16:04:34
Gene Name:pslH
Confidence Code:4
GeneProduct:possible glycosyltransferase
Cell Localization:()
Synonyms:PA2238
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|68345864|gb|AAY93470.1|  glycosyl transferase, group 1 family protein [Pseudomonas fluorescens Pf-5]
     Length=405
     Score =  543 bits (1398),  Expect = 5e-153
     Identities = 255/391 (65%), Positives = 310/391 (79%), Gaps = 0/391 (0%)

gi|63257243|gb|AAY38339.1|  Glycosyl transferase, group 1 [Pseudomonas syringae pv. syringae B728a]
     Length=405
     Score =  501 bits (1289),  Expect = 2e-140
     Identities = 233/391 (59%), Positives = 293/391 (74%), Gaps = 0/391 (0%)








 
Structural Features:
COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane].
             CD-Length = 381 residues,  99.7% aligned
             Score = 88.5 bits (217), Expect = 1e-18






   
Genomic Context:






   
Comment:


















    ReferenceID:2865




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20010




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32535




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1431_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1431
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2591
                           PA2238_tr
                           translation of PA2238
                           402
                           99.00
                           99.50
                           0
                           2081.0
     

     
     
81484
                           gb|AAG05626.1|AE004649_17
                           (AE004649) hypothetical protein PA2238 [Pseudomonas aeruginosa PAO1]
                           402
                           99.00
                           99.50
                           0
                           2081.0
     

     
     
81485
                           gb|AAO57010.1|
                           (AE016868) glycosyl transferase, group 1 family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           405
                           57.53
                           73.82
                           3
                           1288.0
     

     
     
81486
                           gb|AAN67737.1|AE016404_12
                           (AE016782) glycosyl transferase, putative [Pseudomonas putida KT2440]
                           415
                           52.28
                           69.39
                           13
                           1180.0
     

     






      

          
GC ORFID: 44433How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2238Glimmer Score: 

          
Start: 1783871Stop: 1785079

          
Length: 1209


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2238 translation of PA2238Homolog Bit Score 806.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6840 (ORF: BLASTX 501.0), t_PA2238 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTATTCTCTGGATCCTGCCCTACTCGCCCTGGCCCACCACCAGCGGCGGCAAGACCCGCCAGTACCAC 
CTGCTGCGCAGCCTCGCGGCACGCGGCCACCGGATCACCGTGCTGCTGCACAGCAAGCAGCCGGTGAGCGCC 
GAGGATCGCCAGGCCCTGGAGCCCTTCCTCGAACGCCTGGTCGTGCTGCCGCGCCGACCGCTGCGCAGCCTC 
TCCACGCTGCTCGCCGCGCTGTTCGCGCCCTACCCGCTGCTGGCCAGCGTCAACGGCCTGTCGGCGGAGCTG 
CAACGCACCGCCACGGAGTTGCTGCGCGAGCCCTGGGACGTGGTCCAGGTCGAGCACAGCTATAGCTTCCAG 
CCCTACGAGCGACCGCTGCGCGACGCCGGCCAGCCGTTCGTGCTCACCGAGCACAACGTCGAGTCGTCCCTC 
GGTGCCGCCACCTACGACCGCCTGCCGGGCTGGGCGCTGCCCTTCGTGCGCTACGACCAGTGGCGTTACCGC 
CGCTGGGAACGCCGGGTGATGGGCCAGGCGGCAGCGGTCGTCGCCGTGACCGAGAAAGATGCGCGGCAGCTC 
GGCGCGATGCTCGGGCGCCCGGTGCCAGTGGTGGTCAACGGGGTCGACTGCGAGCACTTCGCCGCCGCCCGG 
CCGACGCCCGAAGCGCAGCGCGTGCTGTTCCTCGGCAACTACGAATACGCACCGAACGTCGATGCCGTGGAA 
TGGATGCTCGACGAGATCCTGCCGCGGGTCTGGGCACACTGCCCCGaggCGCGCATGAGCGTCTGCGGCTAT 
GCGCTGCCGGCGGAGTGGGCGCAACGCTGGAGCGATCCGCGCATCGAATGGCAAGGCTTCGTTCCCGACCTG 
CTGCAACTGCAATCGAGCAGTTCGGTGTTCCTCGCCGCGCTGCGCCATGGCGGCGGTTCGAAGCTGAAGGTG 
CTCGAGGCCCTGGCCGCCGGGCTGCCGCTGGCGAGTACCGCGCAGGGCGTTTCCGGCCTGGAACTGCGGGAC 
GGCGAGGACTACCTGGGCGGCGAAACCGCCGAGCAGCTCGCCAACGCCGTGGTGCGCCTGTTGCAGGACCCC 
GCGCAGGCCCGCTCGCTGGGCGAGAACGGCCGCGCCTACGTACGTCGCGCGCACGACTGGAGCGTCGCCGCC 
AGCCAACTGGAACAGGTCTACGCCGGCCTCGCCGAAGGAGCGCCGGCATGCGCATAG