ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1430

TrivialName: PA14_36070

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_36070

PAO1 Ortholog Locus: PA2215

Sequence Length: 1176

Protein Length: 391

Start: 3213824

Stop: 3212649

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05603.1|AE004648_2 (AE004648) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 390/391 (99%), Positives = 390/391 (99%)

Sequence:

ATGAAAATCAAATCCGTCCGTACCCGCGTCTTCGAATGGAAGGGCAAGGTCGTCCCGCCGCAGGCGCACTTC
TGCACCAATGCCAGCGACATCCTGTTCGAGAAAGGAGACGCCATGGGCTCGTTCCGCTTCCACGGCTGGCTG
GTGGTGGAGATCGAGACCGACGACGGCCTCGTCGGCATCGGCAACTGCGCCCTGGCGCCGCGCGTGGCGAAG
GAAATCGTCGACCTCTACCTGGCGCCGATCTGCATCGGCGAAGACCCGTTCGACAACGAGTACATCTGGCAG
AAGATGTATCGCCGCACCCACGCCTGGGGCCGCAAGGGCATCGGCATGGCAGCCATCTCGGCGGTCGACCTG
GCGATCTGGGACATCATGGGCAAGGCGGTGAACAAGCCGGTGTTCAAGCTGCTCGGCGGCCGCACCAAGGAG
AAGATCTGGACCTACGCCTCGAAGCTCTACGCCAACGACAACCTCGACGCCTTCCTCGAAGAGGCCCAGGGC
TACCTGAACCAGGGCTTCACCGCGCTGAAGATGCGCTTCGGCTATGGCCCCAAGGACGGCCCGGCGGGCATG
CGCAGGAACATCGAGCAGGTCCGCGCGCTACGCGAACTGGCCGGGCCGGACATCGACATCATGCTCGAATGC
TACATGGGCTGGACCCTGGAATACGCCCGGCGGATGCTGCCGAAGCTCGCCGAGTTCGAACCGCGCTGGCTG
GAGGAGCCGGTGATCGCCGATGACATCGAGGGCTACGTCGAGCTGAAGAAGATGGGGATCATGCCGATCTCC
GGCGGCGAGCACGAATTCACCGGCCACGGCTTCAAGGACCTGCTGGAGCGCCGCGCGGTGGACGTCATCCAG
TACGACACCAACCGCGTCGGCGGGATCACCGCCGCGCGCAAGATCAACGCCATGGCCGAGGCCTGGTCGGTG
CCGGTGATCCCGCACGCCGGACAGTTGCACAACTATCACCTGACCATGGCCAGCACCGCCTCGCCGATGGCC
GAGTTCTTCCCGGTGTTCGACGTCGAGGTCGGCAACGAGCTGTTCTACTACGTGTTCAAGGGCGAGCCGCAG
CCGGTCGACGGCTATATCCAGCTGGACGACCACAAGCCCGGTCTGGGCCTGGAGATATCCGAAGAGCACCTC
AAGGATTTCATCATCATCGAGTGA

Translation:

MKIKSVRTRVFEWKGKVVPPQAHFCTNASDILFEKGDAMGSFRFHGWLVVEIETDDGLVGIGNCALAPRVAK
EIVDLYLAPICIGEDPFDNEYIWQKMYRRTHAWGRKGIGMAAISAVDLAIWDIMGKAVNKPVFKLLGGRTKE
KIWTYASKLYANDNLDAFLEEAQGYLNQGFTALKMRFGYGPKDGPAGMRRNIEQVRALRELAGPDIDIMLEC
YMGWTLEYARRMLPKLAEFEPRWLEEPVIADDIEGYVELKKMGIMPISGGEHEFTGHGFKDLLERRAVDVIQ
YDTNRVGGITAARKINAMAEAWSVPVIPHAGQLHNYHLTMASTASPMAEFFPVFDVEVGNELFYYVFKGEPQ
PVDGYIQLDDHKPGLGLEISEEHLKDFIIIE*

AnnotationID:1439 GeneID:1430

AnnotatorUID: urbach

Modification Date/Time: 2004-03-08 11:11:13

Gene Name:

Confidence Code: 3

GeneProduct: putative enzyme

Cell Localization: ()

Synonyms: PA2215

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (20) Putative enzymes

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG4948,pfam01188,pfam02746

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

PSSMs producing significant alignments:   Score(bits)                                                                   
gnl|CDD|14081 COG4948, COG4948, L-alanine-DL-glutamate epimerase and related...291  2e-79
gnl|CDD|24520 pfam01188, MR_MLE, Mandelate

Genomic Context:

Comment:

ReferenceID:2863

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17055

Author/Investigator(s):

Title: CDD search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1439_CDD.cgi

URL:

ReferenceID:20008

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1430

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2590 PA2215_tr translation of PA2215 391 99.74 99.74 0 2083.0

81483 gb|AAG05603.1|AE004648_2 (AE004648) hypothetical protein PA2215 [Pseudomonas aeruginosa PAO1] 391 99.74 99.74 0 2083.0

GC ORFID: `44432`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2215`	Glimmer Score:
Start: `1740092`	Stop: `1741267`
Length: `1176`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2215 translation of PA2215`	Homolog Bit Score `806.0`
Other Homologs: `t_PA2215 (ORF: GLIMMER)`
GC ORF Sequence
ATGAAAATCAAATCCGTCCGTACCCGCGTCTTCGAATGGAAGGGCAAGGTCGTCCCGCCGCAGGCGCACTTC TGCACCAATGCCAGCGACATCCTGTTCGAGAAAGGAGACGCCATGGGCTCGTTCCGCTTCCACGGCTGGCTG GTGGTGGAGATCGAGACCGACGACGGCCTCGTCGGCATCGGCAACTGCGCCCTGGCGCCGCGCGTGGCGAAG GAAATCGTCGACCTCTACCTGGCGCCGATCTGCATCGGCGAAGACCCGTTCGACAACGAGTACATCTGGCAG AAGATGTATCGCCGCACCCACGCCTGGGGCCGCAAGGGCATCGGCATGGCAGCCATCTCGGCGGTCGACCTG GCGATCTGGGACATCATGGGCAAGGCGGTGAACAAGCCGGTGTTCAAGCTGCTCGGCGGCCGCACCAAGGAG AAGATCTGGACCTACGCCTCGAAGCTCTACGCCAACGACAACCTCGACGCCTTCCTCGAAGAGGCCCAGGGC TACCTGAACCAGGGCTTCACCGCGCTGAAGATGCGCTTCGGCTATGGCCCCAAGGACGGCCCGGCGGGCATG CGCAGGAACATCGAGCAGGTCCGCGCGCTACGCGAACTGGCCGGGCCGGACATCGACATCATGCTCGAATGC TACATGGGCTGGACCCTGGAATACGCCCGGCGGATGCTGCCGAAGCTCGCCGAGTTCGAACCGCGCTGGCTG GAGGAGCCGGTGATCGCCGATGACATCGAGGGCTACGTCGAGCTGAAGAAGATGGGGATCATGCCGATCTCC GGCGGCGAGCACGAATTCACCGGCCACGGCTTCAAGGACCTGCTGGAGCGCCGCGCGGTGGACGTCATCCAG TACGACACCAACCGCGTCGGCGGGATCACCGCCGCGCGCAAGATCAACGCCATGGCCGAGGCCTGGTCGGTG CCGGTGATCCCGCACGCCGGACAGTTGCACAACTATCACCTGACCATGGCCAGCACCGCCTCGCCGATGGCC GAGTTCTTCCCGGTGTTCGACGTCGAGGTCGGCAACGAGCTGTTCTACTACGTGTTCAAGGGCGAGCCGCAG CCGGTCGACGGCTATATCCAGCTGGACGACCACAAGCCCGGTCTGGGCCTGGAGATATCCGAAGAGCACCTC AAGGATTTCATCATCATCGAGTGA