ViewGene
Locus Name:
GeneID:
Location:

GeneID:143
TrivialName: PA14_52350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52350
PAO1 Ortholog Locus:PA0920
Sequence Length:2646
Protein Length:881
Start: 4644946
Stop: 4647591
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04309.1|AE004526_4 (AE004526) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 875/881 (99%), Positives = 877/881 (99%)
Sequence:
ATGCGCACCGACGCTCCCGTTCCAGAACATCCCGCTCCACCCAGCTCTCCCGCGTCCCCACAACGCATCCGG
CTGATCGATCGGATTACCGCCTACCGCCAGCCCATCGGCCTGGTCTTCACCTTGCTGCTGTTCGGCCTGGCG
CTGGTGGCCTGCTACCACCTGCTACGGGAGATCGATCCCGGCGCCCTCCACGATGCCATCGCCGACGTGCCC
AGGCCGGCGCTGCTCGGCGCCCTGGGCGCGACCGCCCTCGGCTTCGTCATCCTGCTCGGCTACGAGTGGTCG
GCCAGCCGCTTCGCTGGCGTCACGCTGCCCATGCGCAGCCTGGCCACCGGTGGCTTCAGCGCCTTCGCCATC
GGCAATGCGGTAGGCCTGTCGCTGCTTTCCGGCGGCTCCGTACGCTACCGACTGTATTCCCGGCATGGCATC
GGCGCTGCCGAAATTGCCCGGATGACGCTATTTGCCAGCCTTTCCCTGGGCTGCGCACTGCCGGTGCTGGCG
GCACTCGCCGCACTCTGCGACCTCGACGATGCGGCATCGGCGCTGCACCTGCCCCACGCCCTGGTCGCCGTC
ATCGCGATCGCCGTCCTGTTGCTGGCTGTCGGCCTGGTGGCGTTCCTGGCCCGGCACCGCCTGCCGGGAGAA
CGGCCGTCCCCCGACAGCCTGCTGGTCCGCCTCGGCCGCCGCAGCCTGCGCCTGCCGGGCCTGCGCCTGTCG
CTGCTGCAACTGCTGATCACCGCCCTCGACGTCGCCGCCGCCGCTACCGTCCTTTATCTGTTGCTGCCGGAA
ACCCCACCCTTCGCGGCGTTCCTGCTGGTCTACCTGCTCGCCCTGGCCGCCGGCGTACTCAGCCACGTACCG
GGCGGAGTCGGGGTGTTCGAGGCGGTGCTGCTGGCCGCGTTCGCCGGCCAACTGGGCGCCGCGCCGCTGGCC
GCGGCCCTGCTCTTGTACCGCTTGATTTATGTGGTACTGCCGCTGCTGCTGGCCTGCCTGTTGTTGCTGTTC
CTCGAAGCGCGCCGGTTGTGGGTGACGCGCCAGGCGATCCGCGTCGCCTCGGGTTTCGCCGCACCGATCCTG
GCGATCCTGGTCTTCCTCTCCGGTGTCGTGCTGCTGTTTTCCGGCGCCACGCCGGCGATCGACACCCGCCTG
GAGCACCTCGGCTTCCTCATTCCACATCGCCTGATCGATGCCTCGCACCTGGTCGCCAGCCTGATCGGCGTG
CTCTGCCTGCTGCTCGCGCAGGGTTTGCGCCGACGGCTGTCGGCCGCCTGGGCCCTGACCCTGGTGCTGTTG
CTGGTGGGCGCCCTGCTTTCGCTGCTGAAAGGCTTCGACTGGGAAGAAGCCAGCCTGCTGAGCCTGACCGCC
GCGCTGCTCGCCATGTTCCGCCGCTCCTTCTACCGTCCCAGCCGGCTGATGGAAGTACCCTTCTCGCCGCTT
TACGTAGGCGCCAGCATCTGCGTGGTCGGCGCCTCGGTCTGGCTGCTGCTGTTCGCCAACCAGGACGTGCAT
TACAGCAACCAGCTCTGGTGGCAGTTCGCCCTGGACGCCGACGCCCCGCGCGCCCTGCGCGCCGCCCTCGGC
AGTTGCCTGCTGCTCCTGGCCCTGGCCCTTGGCTGGCTGCTGCGCGCGGCACCGCCGGCGATCCGCGAGCCG
GACGCGGAAGAGCTGCAGCGCGCGGCGCGGATCATCCGCCACTCGGACCAGCCGGATGGCGGCCTGGCCCTG
ACCGGCGACAAGGCCCTGCTCTTCCATGAGGGCGACGACGCTTTCCTCATGTACGCCCGCCGCGGTCGCAGC
ATGATCGCCCTGTACGACCCGATCGGCCCGGCCATGCAGCGCGCCGAACTGATCTGGCAGTTCCGCGACCTC
TGCGACCTGCACCATGCCCGCCCGGTGTTCTACCAGGTGCGTGCCGAGAACCTGCCGTTCTACATGGACATC
GGCCTGACCGCCCTCAAGCTCGGCGAAGAAGCGCGAGTCGACCTGCTGCGCTTCGACCTGGAGAACAAGGGC
AAGGAAATGAAAGACCTGCGCTACACCTGGAACCGCGGCCAGCGCGACGGGCTGGCCCTGGAGTTCCATGAA
CCGGGCCAGGCTCCGCTGGACGAGCTGAAGGCGATATCGGACGCCTGGCTGGGCGGCAAGCAGGTGCGCGAG
AAAGGCTTCTCCCTGGGCCGCTTCACCCCGGCGTACCTGAACTTCTTCCGCATCGCCATCGTCCGCCACCAG
GGCAAGCCGGTGGCCTTCGCCAACCTGCTGGAAACCGACAGCCGCGAACTGGCGAGCCTCGACCTGATGCGC
GTGCACCCGGAGGCGCCGAAGCTGACCATGGAGTTCCTCATGCTCGGCCTCATCCTCCACTACAAGGCCCAG
GGCCACGCGCGCTTCAGCCTCGGCATGGTGCCGCTGGCCGGGCTCCAGCCAAGGCGCGGCGCGCCGTTGACC
CAGCGCCTGGGCGCACTGGTCTTCCGGCGGGGCGAACAGTTCTACAATTTCCAGGGGCTGCGACGCTTCAAG
GACAAGTTCCAGCCCGACTGGGAACCCCGCTACCTGGCCGTGCCAGCCGGGCTCGACCCGCTGGTGGCCCTG
GCCGATACCGCCGCGCTGATCGCCGGCGGCCTGACTGGATTGGTGAAACGCTGA
Translation:
MRTDAPVPEHPAPPSSPASPQRIRLIDRITAYRQPIGLVFTLLLFGLALVACYHLLREIDPGALHDAIADVP
RPALLGALGATALGFVILLGYEWSASRFAGVTLPMRSLATGGFSAFAIGNAVGLSLLSGGSVRYRLYSRHGI
GAAEIARMTLFASLSLGCALPVLAALAALCDLDDAASALHLPHALVAVIAIAVLLLAVGLVAFLARHRLPGE
RPSPDSLLVRLGRRSLRLPGLRLSLLQLLITALDVAAAATVLYLLLPETPPFAAFLLVYLLALAAGVLSHVP
GGVGVFEAVLLAAFAGQLGAAPLAAALLLYRLIYVVLPLLLACLLLLFLEARRLWVTRQAIRVASGFAAPIL
AILVFLSGVVLLFSGATPAIDTRLEHLGFLIPHRLIDASHLVASLIGVLCLLLAQGLRRRLSAAWALTLVLL
LVGALLSLLKGFDWEEASLLSLTAALLAMFRRSFYRPSRLMEVPFSPLYVGASICVVGASVWLLLFANQDVH
YSNQLWWQFALDADAPRALRAALGSCLLLLALALGWLLRAAPPAIREPDAEELQRAARIIRHSDQPDGGLAL
TGDKALLFHEGDDAFLMYARRGRSMIALYDPIGPAMQRAELIWQFRDLCDLHHARPVFYQVRAENLPFYMDI
GLTALKLGEEARVDLLRFDLENKGKEMKDLRYTWNRGQRDGLALEFHEPGQAPLDELKAISDAWLGGKQVRE
KGFSLGRFTPAYLNFFRIAIVRHQGKPVAFANLLETDSRELASLDLMRVHPEAPKLTMEFLMLGLILHYKAQ
GHARFSLGMVPLAGLQPRRGAPLTQRLGALVFRRGEQFYNFQGLRRFKDKFQPDWEPRYLAVPAGLDPLVAL
ADTAALIAGGLTGLVKR*
AnnotationID:153GeneID:143
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 16:04:55
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0920
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2898, pfam04329, COG0392
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2898, Uncharacterized conserved protein. Score: 557, 1e-159
pfam04329, DUF470, Family of unknown function (DUF470). Score: 168, 3e-42
COG0392, Predicted integral membrane protein. Score: 134, 3e-32






   
Genomic Context:






   
Comment:


















    ReferenceID:289




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17431




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:143
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
260
                           PA0920_tr
                           translation of PA0920
                           881
                           99.31
                           99.54
                           0
                           4410.0
     

     
     
17613
                           gb|AAG04309.1|AE004526_4
                           (AE004526) hypothetical protein PA0920 [Pseudomonas aeruginosa PAO1]
                           881
                           99.31
                           99.54
                           0
                           4410.0
     

     
     
17614
                           gb|AAN66826.1|AE016311_6
                           (AE016778) membrane protein, putative [Pseudomonas putida KT2440]
                           881
                           78.88
                           87.28
                           1
                           3502.0
     

     
     
17615
                           gb|AAO57450.1|
                           (AE016870) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           881
                           75.36
                           86.03
                           1
                           3370.0
     

     
     
17616
                           emb|CAD18673.1|
                           (AL646085) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           905
                           41.87
                           56.57
                           46
                           1625.0
     

     






      

          
GC ORFID: 43145How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0920Glimmer Score: 

          
Start: 308961Stop: 306316

          
Length: 2646


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0920 translation of PA0920Homolog Bit Score 1703.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4766 (ORF: BLASTX 1303.0), t_PA0920 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCACCGACGCTCCCGTTCCAGAACATCCCGCTCCACCCAGCTCTCCCGCGTCCCCACAACGCATCCGG 
CTGATCGATCGGATTACCGCCTACCGCCAGCCCATCGGCCTGGTCTTCACCTTGCTGCTGTTCGGCCTGGCG 
CTGGTGGCCTGCTACCACCTGCTACGGGAGATCGATCCCGGCGCCCTCCACGATGCCATCGCCGACGTGCCC 
AGGCCGGCGCTGCTCGGCGCCCTGGGCGCGACCGCCCTCGGCTTCGTCATCCTGCTCGGCTACGAGTGGTCG 
GCCAGCCGCTTCGCTGGCGTCACGCTGCCCATGCGCAGCCTGGCCACCGGTGGCTTCAGCGCCTTCGCCATC 
GGCAATGCGGTAGGCCTGTCGCTGCTTTCCGGCGGCTCCGTACGCTACCGACTGTATTCCCGGCATGGCATC 
GGCGCTGCCGAAATTGCCCGGATGACGCTATTTGCCAGCCTTTCCCTGGGCTGCGCACTGCCGGTGCTGGCG 
GCACTCGCCGCACTCTGCGACCTCGACGATGCGGCATCGGCGCTGCACCTGCCCCACGCCCTGGTCGCCGTC 
ATCGCGATCGCCGTCCTGTTGCTGGCTGTCGGCCTGGTGGCGTTCCTGGCCCGGCACCGCCTGCCGGGAGAA 
CGGCCGTCCCCCGACAGCCTGCTGGTCCGCCTCGGCCGCCGCAGCCTGCGCCTGCCGGGCCTGCGCCTGTCG 
CTGCTGCAACTGCTGATCACCGCCCTCGACGTCGCCGCCGCCGCTACCGTCCTTTATCTGTTGCTGCCGGAA 
ACCCCACCCTTCGCGGCGTTCCTGCTGGTCTACCTGCTCGCCCTGGCCGCCGGCGTACTCAGCCACGTACCG 
GGCGGAGTCGGGGTGTTCGAGGCGGTGCTGCTGGCCGCGTTCGCCGGCCAACTGGGCGCCGCGCCGCTGGCC 
GCGGCCCTGCTCTTGTACCGCTTGATTTATGTGGTACTGCCGCTGCTGCTGGCCTGCCTGTTGTTGCTGTTC 
CTCGAAGCGCGCCGGTTGTGGGTGACGCGCCAGGCGATCCGCGTCGCCTCGGGTTTCGCCGCACCGATCCTG 
GCGATCCTGGTCTTCCTCTCCGGTGTCGTGCTGCTGTTTTCCGGCGCCACGCCGGCGATCGACACCCGCCTG 
GAGCACCTCGGCTTCCTCATTCCACATCGCCTGATCGATGCCTCGCACCTGGTCGCCAGCCTGATCGGCGTG 
CTCTGCCTGCTGCTCGCGCAGGGTTTGCGCCGACGGCTGTCGGCCGCCTGGGCCCTGACCCTGGTGCTGTTG 
CTGGTGGGCGCCCTGCTTTCGCTGCTGAAAGGCTTCGACTGGGAAGAAGCCAGCCTGCTGAGCCTGACCGCC 
GCGCTGCTCGCCATGTTCCGCCGCTCCTTCTACCGTCCCAGCCGGCTGATGGAAGTACCCTTCTCGCCGCTT 
TACGTAGGCGCCAGCATCTGCGTGGTCGGCGCCTCGGTCTGGCTGCTGCTGTTCGCCAACCAGGACGTGCAT 
TACAGCAACCAGCTCTGGTGGCAGTTCGCCCTGGACGCCGACGCCCCGCGCGCCCTGCGCGCCGCCCTCGGC 
AGTTGCCTGCTGCTCCTGGCCCTGGCCCTTGGCTGGCTGCTGCGCGCGGCACCGCCGGCGATCCGCGAGCCG 
GACGCGGAAGAGCTGCAGCGCGCGGCGCGGATCATCCGCCACTCGGACCAGCCGGATGGCGGCCTGGCCCTG 
ACCGGCGACAAGGCCCTGCTCTTCCATGAGGGCGACGACGCTTTCCTCATGTACGCCCGCCGCGGTCGCAGC 
ATGATCGCCCTGTACGACCCGATCGGCCCGGCCATGCAGCGCGCCGAACTGATCTGGCAGTTCCGCGACCTC 
TGCGACCTGCACCATGCCCGCCCGGTGTTCTACCAGGTGCGTGCCGAGAACCTGCCGTTCTACATGGACATC 
GGCCTGACCGCCCTCAAGCTCGGCGAAGAAGCGCGAGTCGACCTGCTGCGCTTCGACCTGGAGAACAAGGGC 
AAGGAAATGAAAGACCTGCGCTACACCTGGAACCGCGGCCAGCGCGACGGGCTGGCCCTGGAGTTCCATGAA 
CCGGGCCAGGCTCCGCTGGACGAGCTGAAGGCGATATCGGACGCCTGGCTGGGCGGCAAGCAGGTGCGCGAG 
AAAGGCTTCTCCCTGGGCCGCTTCACCCCGGCGTACCTGAACTTCTTCCGCATCGCCATCGTCCGCCACCAG 
GGCAAGCCGGTGGCCTTCGCCAACCTGCTGGAAACCGACAGCCGCGAACTGGCGAGCCTCGACCTGATGCGC 
GTGCACCCGGAGGCGCCGAAGCTGACCATGGAGTTCCTCATGCTCGGCCTCATCCTCCACTACAAGGCCCAG 
GGCCACGCGCGCTTCAGCCTCGGCATGGTGCCGCTGGCCGGGCTCCAGCCAAGGCGCGGCGCGCCGTTGACC 
CAGCGCCTGGGCGCACTGGTCTTCCGGCGGGGCGAACAGTTCTACAATTTCCAGGGGCTGCGACGCTTCAAG 
GACAAGTTCCAGCCCGACTGGGAACCCCGCTACCTGGCCGTGCCAGCCGGGCTCGACCCGCTGGTGGCCCTG 
GCCGATACCGCCGCGCTGATCGCCGGCGGCCTGACTGGATTGGTGAAACGCTGA