ViewGene
Locus Name:
GeneID:
Location:

GeneID:1427
TrivialName: PA14_01230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01230
PAO1 Ortholog Locus:PA0101
Sequence Length:1233
Protein Length:410
Start: 120178
Stop: 121410
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03491.1|AE004448_10 (AE004448) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 399/407 (98%), Positives = 404/407 (99%)
Sequence:
ATGCTGACTTCCGTGGTGCTCGACCAGCACGCCGAGGAAGCCGCCTTCCTTGCCCTGCTCCGCGACTACGCC
GTGCGTGCGCCCCATTACGACCTGGAGGAGCTCGCCGAGCTCGATCAGCGCATCGAGGCGCACCTGGACGGC
CTGGCGATCGCCGGCCAGGCCGGCCATGACGCCCTGCTCGAGCAACTCGACGCGCACGCCCAGGGCGAGGCG
TTCGCCCTCGCGGTGCTGGCCATGCAGGCAGGAGACGATGCGTTGATCGGACGGATGCGCGCCTGTCTTGCG
GCGTCTCCGGAAGCCCGGCGCGGTTTCGCCGCAGCCCTCGGCTGGCTCGACTGGGGCCAGGCGCGGCCCTGG
GTGGAGCGCCTGCTGGCCTCGCCCGAGCCGCTGTTCCGCGCCATTGGCCTGGCCGCCTGCGGCATGCACCGG
CATGACCCGGGGCCGGCGCTGCTGTCCGCCCTTGGCCACGCCGACCCGGCGGTGCTGGCGCGCGCCGCGCGC
ACCGCCGGCGAACTGCGTCGGCGCGACCTGATGGCGAATATCCGCGCCTACCGCGCCCACGACGACCCGAGC
CTGCGCTTCTGGGCCAACTGGGCCACCGCGCAGATGGGCGACGAGGAGGCGTTAGGGCCATTGCGTGCGTTC
GCCGGGCAGCCCGGCCCGTTCCAGCTGCCGGCGACCATGGTGCTGCTCGCCTGGCAGCCGCGTGACACCAGC
ATGGCCTGGATTCGCCAACTGATGCAGGCGGCGGACACGCGGCGGATCGGCATCCAGGCCACCGGCCTGTTC
GGCGATCCGGTGGCGGTGCCCTGGCTGATCCAGCAGATGCGCGACGAGAGTCTGGCGCGGGTCGCCGGCGAG
GCCTTCAGCCTGATCACCGGCGCCGACCTGGCGTTGCTCGACCTGGAGCTGGAGGCCTTGCCCGACTACGAC
CCAGGCCCCAACGACGATCCCGACGACGACAACGTCGCCCTCGACGACGACGAGAACCTTACCTGGCCGGAG
GCGGAGCGAGTCTCCGCCTGGTGGCGTGACAACGGCGCGCGCTTCGTCGCCGGGCGCGCCTACCTGCTCGGC
GAACCTCTGGGCGAGGCGCGCTGCCGCCAGGTCCTGCGCAACGGCCAGCAACGCCAGCGAATGGCTGCGGCG
TGCCTGCTGGCGCGCTTCGTGCCGAACCTGCCGCTGTTCCCCACCGGTGCGCCGGTGCGCCGCCAACTGGAC
CTGTTCTGA
Translation:
MLTSVVLDQHAEEAAFLALLRDYAVRAPHYDLEELAELDQRIEAHLDGLAIAGQAGHDALLEQLDAHAQGEA
FALAVLAMQAGDDALIGRMRACLAASPEARRGFAAALGWLDWGQARPWVERLLASPEPLFRAIGLAACGMHR
HDPGPALLSALGHADPAVLARAARTAGELRRRDLMANIRAYRAHDDPSLRFWANWATAQMGDEEALGPLRAF
AGQPGPFQLPATMVLLAWQPRDTSMAWIRQLMQAADTRRIGIQATGLFGDPVAVPWLIQQMRDESLARVAGE
AFSLITGADLALLDLELEALPDYDPGPNDDPDDDNVALDDDENLTWPEAERVSAWWRDNGARFVAGRAYLLG
EPLGEARCRQVLRNGQQRQRMAAACLLARFVPNLPLFPTGAPVRRQLDLF*
AnnotationID:1436GeneID:1427
AnnotatorUID: ericdeziel
Modification Date/Time: 2004-03-08 18:06:30
Gene Name:
Confidence Code:4
GeneProduct:Hypothetical protein
Cell Localization:()
Synonyms:PA0101
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:
Identical to PA010 except for a few nucleotides at beginning and the end


















    ReferenceID:2857




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20002




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1427
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2587
                           PA0101_tr
                           translation of PA0101
                           415
                           96.14
                           97.59
                           5
                           2087.0
     

     
     
81464
                           gb|AAG03491.1|AE004448_10
                           (AE004448) hypothetical protein PA0101 [Pseudomonas aeruginosa PAO1]
                           415
                           96.14
                           97.59
                           5
                           2087.0
     

     
     
81465
                           gb|AAR36571.1|
                           (AE017218) conserved hypothetical protein [Geobacter sulfurreducens PCA]
                           422
                           40.04
                           54.50
                           17
                           764.0
     

     






      

          
GC ORFID: 44429How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0101Glimmer Score: 

          
Start: 5921517Stop: 5922749

          
Length: 1233


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0101 translation of PA0101Homolog Bit Score 808.0

          
Other Homologs:  t_PA0101 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGACTTCCGTGGTGCTCGACCAGCACGCCGAGGAAGCCGCCTTCCTTGCCCTGCTCCGCGACTACGCC 
GTGCGTGCGCCCCATTACGACCTGGAGGAGCTCGCCGAGCTCGATCAGCGCATCGAGGCGCACCTGGACGGC 
CTGGCGATCGCCGGCCAGGCCGGCCATGACGCCCTGCTCGAGCAACTCGACGCGCACGCCCAGGGCGAGGCG 
TTCGCCCTCGCGGTGCTGGCCATGCAGGCAGGAGACGATGCGTTGATCGGACGGATGCGCGCCTGTCTTGCG 
GCGTCTCCGGAAGCCCGGCGCGGTTTCGCCGCAGCCCTCGGCTGGCTCGACTGGGGCCAGGCGCGGCCCTGG 
GTGGAGCGCCTGCTGGCCTCGCCCGAGCCGCTGTTCCGCGCCATTGGCCTGGCCGCCTGCGGCATGCACCGG 
CATGACCCGGGGCCGGCGCTGCTGTCCGCCCTTGGCCACGCCGACCCGGCGGTGCTGGCGCGCGCCGCGCGC 
ACCGCCGGCGAACTGCGTCGGCGCGACCTGATGGCGAATATCCGCGCCTACCGCGCCCACGACGACCCGAGC 
CTGCGCTTCTGGGCCAACTGGGCCACCGCGCAGATGGGCGACGAGGAGGCGTTAGGGCCATTGCGTGCGTTC 
GCCGGGCAGCCCGGCCCGTTCCAGCTGCCGGCGACCATGGTGCTGCTCGCCTGGCAGCCGCGTGACACCAGC 
ATGGCCTGGATTCGCCAACTGATGCAGGCGGCGGACACGCGGCGGATCGGCATCCAGGCCACCGGCCTGTTC 
GGCGATCCGGTGGCGGTGCCCTGGCTGATCCAGCAGATGCGCGACGAGAGTCTGGCGCGGGTCGCCGGCGAG 
GCCTTCAGCCTGATCACCGGCGCCGACCTGGCGTTGCTCGACCTGGAGCTGGAGGCCTTGCCCGACTACGAC 
CCAGGCCCCAACGACGATCCCGACGACGACAACGTCGCCCTCGACGACGACGAGAACCTTACCTGGCCGGAG 
GCGGAGCGAGTCTCCGCCTGGTGGCGTGACAACGGCGCGCGCTTCGTCGCCGGGCGCGCCTACCTGCTCGGC 
GAACCTCTGGGCGAGGCGCGCTGCCGCCAGGTCCTGCGCAACGGCCAGCAACGCCAGCGAATGGCTGCGGCG 
TGCCTGCTGGCGCGCTTCGTGCCGAACCTGCCGCTGTTCCCCACCGGTGCGCCGGTGCGCCGCCAACTGGAC 
CTGTTCTGA