ViewGene
Locus Name:
GeneID:
Location:

GeneID:1426
TrivialName: PA14_57290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57290
PAO1 Ortholog Locus:PA4408
Sequence Length:1254
Protein Length:417
Start: 5105346
Stop: 5104093
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07796.1|AE004856_7 (AE004856) cell division protein FtsA [Pseudomonas aeruginosa PAO1]
Identities = 417/417 (100%), Positives = 417/417 (100%)
Sequence:
ATGGCAAGCGTGCAGAGCGGCAAGATGATCGTCGGCCTCGACATCGGTACCTCCAAGGTGGTGGCGCTGGTG
GGCGAGGTGACGGCCGATGGCCAGCTGGAGGTCGTTGGCATCGGTACTCATCCGTCCCGCGGCCTGAAGAAG
GGCGTGGTGGTGAACATCGAGTCCACCGTGCAGTCGATCCAGCGCGCCATCGACGAGGCCCAGCAGATGGCC
GGTTGCCGTATCCACTCGGCGTTCGTCGGCATCGCCGGCAACCACATCCGCAGCCTCAATTCCCACGGCATC
GTGGCGATCCGCGATCGCGAGGTGAACCCGGCGGATATCGAACGGGTACTGGATGCCGCCCAGGCGGTGGCG
ATCCCGGCGGACCAGCGGGTGCTGCATACCCTGGCCCAGGATTACGTGATCGATAACCAGGAAGGCGTGCGC
GAGCCGCTGGGCATGTCCGGGGTGCGCCTGGAAGCCAAGGTGCACGTGGTGACCTGCGCGGTGAATGCCTCG
CAGAACATCGAGAAGTGCGTGCGCCGCTGCGGCCTCGAGGTCGACGACATCATCCTCGAGCAGTTGGCCTCG
GCCTATTCGGTGCTGACCGAGGACGAGAAGGAACTGGGCGTGTGCCTGGTGGATATCGGCGGCGGCACCACC
GATATCGCGATCTTCACCGAAGGCGCGATCCGCCATACCGCGGTGATCCCGATCGCCGGCGACCAGGTCACC
AATGACATCGCCATGGCCCTGCGGACGCCGACCCAGTACGCGGAAGAGATCAAGATCCGCTACGCCTGCGCC
CTGGCCAAGCTGGCCGGTGCCGGCGAGACCATCAAGGTGCCCAGCGTCGGCGACCGGCCGCCGCGCGAACTG
TCGCGCCAGGCCCTGGCCGAAGTGGTCGAGCCTCGTTACGACGAGCTGTTCACCCTGGTCCAGGCCGAGCTG
CGCCGCAGCGGCTACGAGGACCTGATCCCGGCCGGGATCGTCCTCACCGGCGGCACCTCGAAGATGGAAGGC
GCGGTCGAGCTGGCCGAGGAAATCTTCCACATGCCGGTACGCCTCGGCGTGCCGTATAGCGTGAAGGGCCTC
ACCGACGTGGTGCGCAACCCGATCTATTCGACGGGCGTCGGCCTGCTGATGTACGGACTGCAGAAGCAGTCC
GATGGCATGTCGATGTCTGTGTCAGGCAGCAGCTACAGCAGCGACGAACCCAAGGCACCTGTCCTGGAGCGG
CTCAAACGCTGGGTCCAGGGCAATTTCTGA
Translation:
MASVQSGKMIVGLDIGTSKVVALVGEVTADGQLEVVGIGTHPSRGLKKGVVVNIESTVQSIQRAIDEAQQMA
GCRIHSAFVGIAGNHIRSLNSHGIVAIRDREVNPADIERVLDAAQAVAIPADQRVLHTLAQDYVIDNQEGVR
EPLGMSGVRLEAKVHVVTCAVNASQNIEKCVRRCGLEVDDIILEQLASAYSVLTEDEKELGVCLVDIGGGTT
DIAIFTEGAIRHTAVIPIAGDQVTNDIAMALRTPTQYAEEIKIRYACALAKLAGAGETIKVPSVGDRPPREL
SRQALAEVVEPRYDELFTLVQAELRRSGYEDLIPAGIVLTGGTSKMEGAVELAEEIFHMPVRLGVPYSVKGL
TDVVRNPIYSTGVGLLMYGLQKQSDGMSMSVSGSSYSSDEPKAPVLERLKRWVQGNF*
AnnotationID:1435GeneID:1426
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 17:05:55
Gene Name:ftsA
Confidence Code:2
GeneProduct:ATP-binding cell division protein FtsA
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs: COG0849,pfam02491
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57853.1| (AE016871) cell division protein FtsA [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 418

 Score =  759 bits (1959), Expect = 0.0
 Identities = 389/418 (93%), Positives = 407/418 (97%), Gaps = 1/418 (0%)

>gb|AAN66964.1|AE016324_14 (AE016779) cell division protein FtsA [Pseudomonas putida KT2440]
          Length = 443

 Score =  739 bits (1909), Expect = 0.0
 Identities = 377/420 (89%), Positives = 402/420 (95%), Gaps = 3/420 (0%)






 
Structural Features:
COG0849, FtsA, Actin-like ATPase involved in cell division 
[Cell division and chromosome partitioning]
CD-Length = 418 residues,  99.5% aligned
Score =  496 bits (1278), Expect = 5e-141
Identities = 224/416 (53%), Positives = 311/416 (74%), Gaps = 3/416 (0%)

pfam02491, FtsA, Cell division protein FtsA
CD-Length = 189 residues, 100.0% aligned
Score =  165 bits (419), Expect = 2e-41
Identities = 72/189 (38%), Positives = 104/189 (55%), Gaps = 1/189 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2855




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20000




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:29361




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1426_cdd.html


    		




 
URL:

















    ReferenceID:32791




  
Author/Investigator(s):
        Azzolina BA, Yuan X, Anderson MS, El-Sherbeini M.





  
Title:
        The cell wall and cell division gene cluster in the Mra operon of Pseudomonas aeruginosa: cloning, production, and purification of active enzymes.




  
PubMed:
        11281713


MedLine:
        




    
Source:
Protein Expr Purif. 2001 Apr;21(3):393-400.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11281713

















    ReferenceID:32792




  
Author/Investigator(s):
        Liao X, Charlebois I, Ouellet C, Morency MJ, Dewar K, Lightfoot J, Foster J, Siehnel R, Schweizer H, Lam JS, Hancock RE, Levesque RC.





  
Title:
        Physical mapping of 32 genetic markers on the Pseudomonas aeruginosa PAO1 chromosome.




  
PubMed:
        8581173


MedLine:
        




    
Source:
Microbiology. 1996 Jan;142 ( Pt 1):79-86.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8581173

















    ReferenceID:32793




  
Author/Investigator(s):
        Martin PR, Watson AA, McCaul TF, Mattick JS.





  
Title:
        Characterization of a five-gene cluster required for the biogenesis of type 4 fimbriae in Pseudomonas aeruginosa.




  
PubMed:
        7565110


MedLine:
        




    
Source:
Mol Microbiol. 1995 May;16(3):497-508.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7565110









           
Homologs By Global Alignment 

           

       



     
Gene ID:1426
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2586
                           PA4408_tr
                           translation of PA4408
                           417
                           99.99
                           99.99
                           0
                           2087.0
     

     
     
81409
                           gb|AAG07796.1|AE004856_7
                           (AE004856) cell division protein FtsA [Pseudomonas aeruginosa PAO1]
                           417
                           99.99
                           99.99
                           0
                           2087.0
     

     
     
81410
                           gb|AAA95992.2|
                           (U19797) FtsA [Pseudomonas aeruginosa]
                           417
                           99.99
                           99.99
                           0
                           2087.0
     

     
     
81411
                           gb|AAO57853.1|
                           (AE016871) cell division protein FtsA [Pseudomonas syringae pv. tomato str. DC3000]
                           419
                           93.31
                           97.13
                           3
                           1961.0
     

     
     
81413
                           gb|AAB92376.1|
                           (AF038380) FtsA [Pseudomonas putida]
                           420
                           89.52
                           95.47
                           3
                           1908.0
     

     






      

          
GC ORFID: 44428How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4408Glimmer Score: 

          
Start: 4369024Stop: 4367771

          
Length: 1254


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4408 translation of PA4408Homolog Bit Score 808.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1132 (ORF: BLASTX 760.0), t_PA4408 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAAGCGTGCAGAGCGGCAAGATGATCGTCGGCCTCGACATCGGTACCTCCAAGGTGGTGGCGCTGGTG 
GGCGAGGTGACGGCCGATGGCCAGCTGGAGGTCGTTGGCATCGGTACTCATCCGTCCCGCGGCCTGAAGAAG 
GGCGTGGTGGTGAACATCGAGTCCACCGTGCAGTCGATCCAGCGCGCCATCGACGAGGCCCAGCAGATGGCC 
GGTTGCCGTATCCACTCGGCGTTCGTCGGCATCGCCGGCAACCACATCCGCAGCCTCAATTCCCACGGCATC 
GTGGCGATCCGCGATCGCGAGGTGAACCCGGCGGATATCGAACGGGTACTGGATGCCGCCCAGGCGGTGGCG 
ATCCCGGCGGACCAGCGGGTGCTGCATACCCTGGCCCAGGATTACGTGATCGATAACCAGGAAGGCGTGCGC 
GAGCCGCTGGGCATGTCCGGGGTGCGCCTGGAAGCCAAGGTGCACGTGGTGACCTGCGCGGTGAATGCCTCG 
CAGAACATCGAGAAGTGCGTGCGCCGCTGCGGCCTCGAGGTCGACGACATCATCCTCGAGCAGTTGGCCTCG 
GCCTATTCGGTGCTGACCGAGGACGAGAAGGAACTGGGCGTGTGCCTGGTGGATATCGGCGGCGGCACCACC 
GATATCGCGATCTTCACCGAAGGCGCGATCCGCCATACCGCGGTGATCCCGATCGCCGGCGACCAGGTCACC 
AATGACATCGCCATGGCCCTGCGGACGCCGACCCAGTACGCGGAAGAGATCAAGATCCGCTACGCCTGCGCC 
CTGGCCAAGCTGGCCGGTGCCGGCGAGACCATCAAGGTGCCCAGCGTCGGCGACCGGCCGCCGCGCGAACTG 
TCGCGCCAGGCCCTGGCCGAAGTGGTCGAGCCTCGTTACGACGAGCTGTTCACCCTGGTCCAGGCCGAGCTG 
CGCCGCAGCGGCTACGAGGACCTGATCCCGGCCGGGATCGTCCTCACCGGCGGCACCTCGAAGATGGAAGGC 
GCGGTCGAGCTGGCCGAGGAAATCTTCCACATGCCGGTACGCCTCGGCGTGCCGTATAGCGTGAAGGGCCTC 
ACCGACGTGGTGCGCAACCCGATCTATTCGACGGGCGTCGGCCTGCTGATGTACGGACTGCAGAAGCAGTCC 
GATGGCATGTCGATGTCTGTGTCAGGCAGCAGCTACAGCAGCGACGAACCCAAGGCACCTGTCCTGGAGCGG 
CTCAAACGCTGGGTCCAGGGCAATTTCTGA